Experiment set1IT020 for Pseudomonas simiae WCS417

Compare to:

LB with Neomycin trisulfate salt hydrate 0.04 mg/ml

200 most detrimental genes:

  gene name fitness t score description  
PS417_08190 +5.1 44.7 membrane protein compare
PS417_13120 +4.9 32.5 aspartyl beta-hydroxylase compare
PS417_08245 +4.7 10.2 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08225 +4.7 28.9 acetolactate synthase compare
PS417_08185 +4.6 19.4 glycosyl transferase compare
PS417_08195 +4.6 31.0 hypothetical protein compare
PS417_08205 +4.5 23.7 acetyltransferase compare
PS417_20635 +4.5 10.1 ABC transporter ATP-binding protein compare
PS417_08165 +4.4 37.0 UDP-glucose 4-epimerase compare
PS417_20130 +4.4 35.9 dehydrogenase compare
PS417_02255 +4.4 14.1 lipopolysaccharide kinase compare
PS417_07510 +4.3 32.2 aspartyl beta-hydroxylase compare
PS417_08230 +4.3 18.6 lipopolysaccharide biosynthesis protein RfbH compare
PS417_00045 +4.3 21.7 glycerol acyltransferase compare
PS417_20650 +4.3 31.1 hypothetical protein compare
PS417_08170 +4.2 30.2 capsular biosynthesis protein compare
PS417_08180 +4.2 36.5 glycosyl transferase compare
PS417_04585 +4.0 8.7 hypothetical protein compare
PS417_08200 +4.0 10.3 hypothetical protein compare
PS417_08220 +3.9 8.0 epimerase compare
PS417_27425 +3.8 25.8 exopolyphosphatase compare
PS417_20645 +3.6 13.3 membrane protein compare
PS417_20985 +3.5 14.3 porin compare
PS417_04365 +3.5 9.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_08155 +3.3 4.1 integration host factor subunit beta compare
PS417_16555 +3.3 11.1 cupin compare
PS417_20665 +3.2 16.3 hypothetical protein compare
PS417_06680 +3.2 26.2 nuclease PIN compare
PS417_02385 +3.1 9.5 esterase compare
PS417_04170 +3.1 14.4 stringent starvation protein A compare
PS417_13825 +3.0 22.6 glycosyltransferase compare
PS417_01955 +3.0 15.6 peptidase compare
PS417_03260 +3.0 9.6 5S ribosomal RNA compare
PS417_08380 +2.9 7.7 ABC transporter ATP-binding protein compare
PS417_28070 +2.8 21.4 phosphate ABC transporter ATP-binding protein compare
PS417_01550 +2.8 13.5 cell envelope biogenesis protein AsmA compare
PS417_20670 +2.7 17.7 glycosyl transferase family 2 compare
PS417_09505 +2.7 15.4 hypothetical protein compare
PS417_20655 +2.7 20.3 group 1 glycosyl transferase compare
PS417_03275 +2.6 20.3 mammalian cell entry protein compare
PS417_03265 +2.6 17.3 paraquat-inducible protein A compare
PS417_19075 +2.6 6.6 ABC transporter ATP-binding protein compare
PS417_08125 +2.4 4.8 prephenate dehydratase compare
PS417_02555 +2.4 21.7 exoribonuclease R compare
PS417_20660 +2.4 16.3 hypothetical protein compare
PS417_19955 +2.3 7.3 hypothetical protein compare
PS417_13620 +2.3 1.2 thermostable hemolysin compare
PS417_21480 +2.2 4.6 23S rRNA pseudouridylate synthase compare
PS417_08160 +2.2 8.2 hypothetical protein compare
PS417_03270 +2.2 6.5 paraquat-inducible protein A compare
PS417_06375 +2.2 4.5 deoxycytidine triphosphate deaminase compare
PS417_24800 +2.1 14.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PS417_02720 +2.1 4.1 TetR family transcriptional regulator compare
PS417_20595 +2.1 17.5 hypothetical protein compare
PS417_19350 +2.1 12.7 GTP cyclohydrolase compare
PS417_04270 +2.1 5.4 ribonuclease G compare
PS417_24780 +2.1 16.4 peptidase C13 compare
PS417_01290 +2.1 1.8 ADP-ribose diphosphatase compare
PS417_27065 +2.0 11.1 hypothetical protein compare
PS417_01600 +2.0 4.3 peptidase M23 compare
PS417_10855 +2.0 3.6 chemotaxis protein CheY compare
PS417_23900 +1.9 12.9 poly(A) polymerase compare
PS417_26370 +1.9 9.3 RNA helicase compare
PS417_10860 +1.9 1.7 flagellar basal body rod protein FlgG compare
PS417_03560 +1.9 5.4 GTP-binding protein compare
PS417_20610 +1.9 3.5 hypothetical protein compare
PS417_28080 +1.8 10.6 phosphate ABC transporter permease compare
PS417_25765 +1.8 2.1 transcriptional regulator compare
PS417_23915 +1.7 8.0 pantoate--beta-alanine ligase compare
PS417_22825 +1.7 8.6 hypothetical protein compare
PS417_27785 +1.7 8.9 phosphoglucomutase compare
PS417_25100 +1.6 7.7 hypothetical protein compare
PS417_28075 +1.6 4.8 phosphate ABC transporter permease compare
PS417_21630 +1.5 5.2 magnesium transporter compare
PS417_28050 +1.5 6.0 hypothetical protein compare
PS417_18310 +1.5 3.4 hypothetical protein compare
PS417_24500 +1.5 6.1 DEAD/DEAH box helicase compare
PS417_04595 +1.5 6.7 cell division protein MraZ compare
PS417_13605 +1.5 2.7 short-chain dehydrogenase compare
PS417_18025 +1.4 2.1 cytochrome C compare
PS417_04290 +1.4 6.4 hypothetical protein compare
PS417_25120 +1.4 2.8 capsular biosynthesis protein compare
PS417_20620 +1.4 7.3 glycosyl transferase family 2 compare
PS417_10720 +1.4 5.3 chemotaxis protein CheY compare
PS417_21090 +1.4 5.5 hypothetical protein compare
PS417_21095 +1.4 8.3 membrane protein compare
PS417_02270 +1.4 5.5 carbamoyltransferase compare
PS417_07575 +1.3 7.9 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_26800 +1.3 8.5 cell division protein FtsX compare
PS417_16370 +1.3 8.0 chemotaxis protein CheY compare
PS417_13685 +1.3 7.6 HxlR family transcriptional regulator compare
PS417_27195 +1.3 2.9 N-acetylglutamate synthase compare
PS417_04380 +1.3 3.3 ABC transporter permease compare
PS417_25105 +1.3 3.5 hypothetical protein compare
PS417_25730 +1.3 7.4 phosphoglycolate phosphatase compare
PS417_04435 +1.3 9.1 uracil phosphoribosyltransferase compare
PS417_01200 +1.3 3.7 phosphoesterase compare
PS417_22875 +1.2 1.7 hypothetical protein compare
PS417_28085 +1.2 9.3 phosphate-binding protein compare
PS417_26805 +1.2 2.1 cell division protein FtsE compare
PS417_21100 +1.2 9.3 alpha-L-glutamate ligase compare
PS417_00625 +1.1 4.5 taurine dioxygenase compare
PS417_07455 +1.1 2.6 glutamine amidotransferase compare
PS417_05825 +1.1 2.0 cytochrome D ubiquinol oxidase subunit II compare
PS417_00220 +1.1 1.4 hypothetical protein compare
PS417_16385 +1.1 4.4 hypothetical protein compare
PS417_18070 +1.1 1.7 general secretion pathway protein GspH compare
PS417_27765 +1.1 4.7 peptide ABC transporter substrate-binding protein compare
PS417_08150 +1.1 2.4 hypothetical protein compare
PS417_25270 +1.1 1.4 NrdR family transcriptional regulator compare
PS417_21210 +1.0 2.4 amidotransferase compare
PS417_22520 +1.0 3.0 histidine kinase compare
PS417_05365 +1.0 1.8 FAD-binding protein compare
PS417_02065 +1.0 3.0 membrane protein compare
PS417_24230 +1.0 6.5 ATP-dependent protease compare
PS417_16640 +1.0 2.7 toxin compare
PS417_13110 +1.0 4.7 methylase compare
PS417_02320 +1.0 4.8 metal ABC transporter ATPase compare
PS417_06370 +1.0 1.0 cold-shock protein compare
PS417_05410 +1.0 4.3 membrane protein compare
PS417_27750 +1.0 5.5 transcriptional regulator compare
PS417_12135 +1.0 4.1 peptidylprolyl isomerase compare
PS417_18585 +1.0 4.6 3-isopropylmalate dehydrogenase compare
PS417_27295 +1.0 4.6 hypothetical protein compare
PS417_23910 +1.0 4.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_08135 +1.0 2.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_00375 +1.0 2.8 membrane protein compare
PS417_07710 +1.0 6.7 membrane protein compare
PS417_00550 +1.0 1.7 hypothetical protein compare
PS417_27585 +0.9 3.9 diaminopimelate epimerase compare
PS417_24615 +0.9 1.1 hypothetical protein compare
PS417_15725 +0.9 1.1 nitrate/nitrite transporter NarK compare
PS417_21000 +0.9 1.5 CrfX protein compare
PS417_22375 +0.9 1.1 cold-shock protein compare
PS417_22805 +0.9 6.3 hypothetical protein compare
PS417_24625 +0.9 5.2 (dimethylallyl)adenosine tRNA methylthiotransferase compare
PS417_24935 +0.9 1.1 hypothetical protein compare
PS417_13555 +0.9 2.4 ABC transporter permease compare
PS417_14015 +0.9 4.9 LysR family transcriptional regulator compare
PS417_08385 +0.9 2.2 hypothetical protein compare
PS417_22085 +0.9 3.3 aldehyde dehydrogenase compare
PS417_20875 +0.9 2.6 chromosome segregation protein SMC compare
PS417_15650 +0.9 1.5 glutamine amidotransferase compare
PS417_18780 +0.9 1.6 flavin reductase compare
PS417_19425 +0.9 1.3 allantoicase compare
PS417_04175 +0.9 3.2 peptidase compare
PS417_19560 +0.9 5.7 amino acid ABC transporter substrate-binding protein compare
PS417_25975 +0.9 4.8 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_04390 +0.9 3.9 toluene tolerance protein compare
PS417_21010 +0.8 2.1 ribonuclease activity regulator protein RraA compare
PS417_18370 +0.8 2.1 hypothetical protein compare
PS417_04385 +0.8 4.8 organic solvent ABC transporter substrate-binding protein compare
PS417_02575 +0.8 1.6 membrane protein compare
PS417_05490 +0.8 6.2 fatty acid desaturase compare
PS417_00455 +0.8 1.0 hypothetical protein compare
PS417_18400 +0.8 1.0 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_06660 +0.8 2.5 endoribonuclease compare
PS417_21845 +0.8 1.8 membrane protein compare
PS417_24580 +0.8 4.2 pseudouridine synthase compare
PS417_14645 +0.8 4.3 hypothetical protein compare
PS417_13610 +0.8 3.5 long-chain fatty acid--CoA ligase compare
PS417_11945 +0.8 1.9 hypothetical protein compare
PS417_20340 +0.8 1.3 hypothetical protein compare
PS417_05660 +0.8 5.1 (4Fe-4S)-binding protein compare
PS417_14035 +0.8 5.6 lactoylglutathione lyase compare
PS417_12110 +0.8 1.7 ATP-binding protein compare
PS417_22115 +0.8 1.7 transcriptional regulator compare
PS417_18355 +0.8 4.9 DNA-binding protein compare
PS417_08130 +0.8 1.4 aspartate aminotransferase compare
PS417_27045 +0.8 1.5 ATPase compare
PS417_00065 +0.8 1.8 3-methyladenine DNA glycosylase compare
PS417_13100 +0.8 4.2 ABC transporter ATP-binding protein compare
PS417_18605 +0.8 5.3 LysR family transcriptional regulator compare
PS417_14905 +0.8 1.7 C4-dicarboxylate ABC transporter compare
PS417_27235 +0.8 1.5 ribonucleotide reductase compare
PS417_26990 +0.8 1.6 RNA pyrophosphohydrolase compare
PS417_04185 +0.8 2.2 hypothetical protein compare
PS417_06775 +0.8 2.7 antibiotic transporter compare
PS417_28315 +0.8 1.7 zinc ABC transporter permease compare
PS417_23250 +0.8 5.2 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_20030 +0.8 2.0 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_14020 +0.8 3.5 diguanylate phosphodiesterase compare
PS417_07150 +0.8 5.2 permase compare
PS417_03300 +0.7 3.8 alanine acetyltransferase compare
PS417_25130 +0.7 3.4 hypothetical protein compare
PS417_07985 +0.7 1.2 AbrB family transcriptional regulator compare
PS417_00900 +0.7 1.8 4-aminobutyrate aminotransferase compare
PS417_16360 +0.7 1.2 histidine kinase compare
PS417_05735 +0.7 2.0 tail fiber protein compare
PS417_26255 +0.7 4.2 hypothetical protein compare
PS417_12625 +0.7 5.0 membrane protein compare
PS417_23580 +0.7 1.7 peptidylprolyl isomerase compare
PS417_12390 +0.7 2.4 hypothetical protein compare
PS417_26530 +0.7 1.5 hypothetical protein compare
PS417_01970 +0.7 2.7 pilus assembly protein compare
PS417_22250 +0.7 2.4 pseudouridine synthase compare
PS417_20675 +0.7 5.6 hydroxyacylglutathione hydrolase compare
PS417_13105 +0.7 5.1 MFS transporter compare
PS417_04375 +0.7 2.3 ABC transporter ATP-binding protein compare
PS417_02480 +0.7 5.4 DNA mismatch repair protein compare


Specific Phenotypes

For 36 genes in this experiment

For stress Neomycin trisulfate salt hydrate in Pseudomonas simiae WCS417

For stress Neomycin trisulfate salt hydrate across organisms