Experiment set1IT020 for Variovorax sp. OAS795

Compare to:

Sodium propionate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS13870 -5.5 -3.8 hypothetical protein compare
ABID97_RS13945 -3.9 -5.9 acyl-CoA carboxylase subunit beta compare
ABID97_RS13950 -3.8 -6.8 acetyl-CoA carboxylase biotin carboxylase subunit compare
ABID97_RS06575 -3.7 -3.6 trehalose-phosphatase compare
ABID97_RS13865 -3.6 -5.6 hypothetical protein compare
ABID97_RS23225 -3.4 -10.3 glutamate synthase-related protein compare
ABID97_RS13860 -3.4 -4.8 hypothetical protein compare
ABID97_RS05260 -3.3 -1.4 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS15150 -3.0 -1.3 phage tail assembly protein compare
ABID97_RS23360 -2.7 -1.2 hypothetical protein compare
ABID97_RS16600 -2.7 -5.4 CysB family HTH-type transcriptional regulator compare
ABID97_RS07610 -2.6 -1.1 response regulator transcription factor compare
ABID97_RS16290 -2.6 -9.3 protein-glutamate O-methyltransferase CheR compare
ABID97_RS28290 -2.5 -1.1 hypothetical protein compare
ABID97_RS23935 -2.4 -1.7 twin transmembrane helix small protein compare
ABID97_RS01565 -2.4 -5.0 DNA starvation/stationary phase protection protein compare
ABID97_RS02135 -2.3 -4.9 GspH/FimT family pseudopilin compare
ABID97_RS29270 -2.3 -1.0 cytochrome b561 domain-containing protein compare
ABID97_RS28080 -2.1 -0.9 YbaN family protein compare
ABID97_RS25525 -2.1 -2.5 LacI family DNA-binding transcriptional regulator compare
ABID97_RS05215 -2.0 -1.2 hypothetical protein compare
ABID97_RS19370 -2.0 -3.7 isocitrate lyase/PEP mutase family protein compare
ABID97_RS19375 -2.0 -2.7 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS23220 -2.0 -1.0 glutamate synthase subunit beta compare
ABID97_RS10405 -1.9 -1.1 efflux transporter outer membrane subunit compare
ABID97_RS17590 -1.9 -7.9 endopeptidase La compare
ABID97_RS19720 -1.9 -2.2 shikimate dehydrogenase compare
ABID97_RS23440 -1.8 -7.9 A24 family peptidase compare
ABID97_RS21150 -1.8 -4.4 FAD-dependent oxidoreductase compare
ABID97_RS13325 -1.8 -1.1 antibiotic biosynthesis monooxygenase compare
ABID97_RS14115 -1.8 -2.5 dihydrolipoyl dehydrogenase compare
ABID97_RS12020 -1.8 -1.1 polysaccharide pyruvyl transferase family protein compare
ABID97_RS02145 -1.8 -4.7 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS17265 -1.8 -2.7 two-component system response regulator OmpR compare
ABID97_RS23170 -1.7 -1.7 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
ABID97_RS23425 -1.7 -1.2 tRNA-Pro compare
ABID97_RS10385 -1.7 -1.4 MFS transporter compare
ABID97_RS18255 -1.7 -0.9 hypothetical protein compare
ABID97_RS19220 -1.7 -0.9 DNA polymerase Y family protein compare
ABID97_RS24920 -1.7 -1.2 Holliday junction branch migration protein RuvA compare
ABID97_RS02115 -1.7 -8.1 PilW family protein compare
ABID97_RS18335 -1.6 -0.9 hypothetical protein compare
ABID97_RS02110 -1.6 -8.6 type IV pilus modification protein PilV compare
ABID97_RS28345 -1.6 -1.6 nuclear transport factor 2 family protein compare
ABID97_RS09630 -1.6 -2.3 hypothetical protein compare
ABID97_RS20615 -1.6 -4.7 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS29015 -1.6 -0.9 transcriptional regulator GcvA compare
ABID97_RS23430 -1.6 -6.0 type IV-A pilus assembly ATPase PilB compare
ABID97_RS08710 -1.6 -2.8 polynucleotide adenylyltransferase PcnB compare
ABID97_RS24045 -1.6 -2.5 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS05170 -1.6 -1.4 type VI secretion system tube protein Hcp compare
ABID97_RS05250 -1.6 -4.0 anthranilate synthase component I compare
ABID97_RS23775 -1.6 -4.0 ABC transporter permease compare
ABID97_RS00255 -1.6 -9.1 type IV pilus twitching motility protein PilT compare
ABID97_RS03805 -1.6 -0.9 ATP-binding protein compare
ABID97_RS16985 -1.5 -1.8 transcriptional repressor LexA compare
ABID97_RS08425 -1.5 -2.1 tryptophan synthase subunit alpha compare
ABID97_RS03680 -1.5 -3.9 lysophospholipid transporter LplT compare
ABID97_RS06875 -1.5 -1.8 dihydrodipicolinate synthase family protein compare
ABID97_RS27370 -1.5 -0.9 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
ABID97_RS13735 -1.5 -1.2 hypothetical protein compare
ABID97_RS27395 -1.4 -1.4 5-oxoprolinase subunit PxpA compare
ABID97_RS14260 -1.4 -4.0 FtsH protease activity modulator HflK compare
ABID97_RS08220 -1.4 -6.1 phosphoenolpyruvate carboxylase compare
ABID97_RS00540 -1.4 -6.7 HAMP domain-containing sensor histidine kinase compare
ABID97_RS14265 -1.4 -4.0 protease modulator HflC compare
ABID97_RS07430 -1.4 -4.0 pantoate--beta-alanine ligase compare
ABID97_RS23780 -1.4 -4.6 ABC transporter permease compare
ABID97_RS07855 -1.4 -2.0 ABC transporter ATP-binding protein compare
ABID97_RS20515 -1.4 -1.0 NAD(P)H-quinone oxidoreductase compare
ABID97_RS02140 -1.4 -5.1 sugar transferase compare
ABID97_RS09525 -1.4 -2.2 DUF2059 domain-containing protein compare
ABID97_RS14850 -1.3 -2.7 P-II family nitrogen regulator compare
ABID97_RS20065 -1.3 -1.8 cysteine hydrolase family protein compare
ABID97_RS15665 -1.3 -6.4 [protein-PII] uridylyltransferase compare
ABID97_RS17640 -1.3 -1.6 hydroxysqualene dehydroxylase HpnE compare
ABID97_RS07845 -1.3 -5.7 ABC transporter ATP-binding protein compare
ABID97_RS16690 -1.3 -2.9 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS15285 -1.3 -0.8 hypothetical protein compare
ABID97_RS24690 -1.3 -4.7 methyl-accepting chemotaxis protein compare
ABID97_RS08360 -1.3 -3.5 DUF4845 domain-containing protein compare
ABID97_RS07355 -1.3 -5.3 CHASE3 domain-containing protein compare
ABID97_RS12140 -1.3 -5.3 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS16050 -1.3 -1.1 isochorismatase family cysteine hydrolase compare
ABID97_RS03725 -1.3 -1.5 2-oxo-hept-4-ene-1,7-dioate hydratase compare
ABID97_RS07850 -1.3 -2.8 ABC transporter ATP-binding protein compare
ABID97_RS00930 -1.3 -1.9 organic hydroperoxide resistance protein compare
ABID97_RS17970 -1.3 -2.8 protein TolQ compare
ABID97_RS15130 -1.2 -0.9 contractile injection system protein, VgrG/Pvc8 family compare
ABID97_RS09180 -1.2 -1.9 DNA polymerase I compare
ABID97_RS13750 -1.2 -0.7 hypothetical protein compare
ABID97_RS13850 -1.2 -2.5 hypothetical protein compare
ABID97_RS23230 -1.2 -5.8 transposase compare
ABID97_RS25845 -1.2 -0.9 sugar ABC transporter permease compare
ABID97_RS02125 -1.2 -8.2 PilC/PilY family type IV pilus protein compare
ABID97_RS14160 -1.2 -2.9 cell division protein ZapE compare
ABID97_RS07840 -1.2 -3.9 branched-chain amino acid ABC transporter permease compare
ABID97_RS06180 -1.2 -2.3 ATP-dependent protease subunit HslV compare
ABID97_RS15470 -1.2 -1.7 NADPH-dependent FMN reductase compare
ABID97_RS03640 -1.2 -2.9 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS10295 -1.2 -1.0 winged helix-turn-helix transcriptional regulator compare
ABID97_RS10685 -1.2 -4.5 hypothetical protein compare
ABID97_RS11920 -1.2 -1.0 DUF1003 domain-containing protein compare
ABID97_RS02120 -1.2 -6.2 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS10395 -1.2 -1.2 glycine betaine ABC transporter substrate-binding protein compare
ABID97_RS10885 -1.2 -2.3 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS20730 -1.2 -1.9 RNA methyltransferase compare
ABID97_RS16595 -1.2 -2.1 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS29485 -1.2 -1.2 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS23285 -1.2 -6.3 pilus assembly protein PilM compare
ABID97_RS02420 -1.2 -2.5 protealysin inhibitor emfourin compare
ABID97_RS01415 -1.2 -1.4 DUF1840 domain-containing protein compare
ABID97_RS20770 -1.2 -2.5 sulfatase-like hydrolase/transferase compare
ABID97_RS26470 -1.2 -0.9 c-type cytochrome compare
ABID97_RS25245 -1.2 -4.5 lysophospholipid acyltransferase family protein compare
ABID97_RS23280 -1.2 -4.0 PilN domain-containing protein compare
ABID97_RS10705 -1.2 -2.0 H-NS histone family protein compare
ABID97_RS22860 -1.2 -1.5 MurR/RpiR family transcriptional regulator compare
ABID97_RS10120 -1.2 -1.0 LysR family transcriptional regulator compare
ABID97_RS23650 -1.2 -7.4 serine/threonine-protein kinase compare
ABID97_RS18565 -1.1 -1.3 TetR/AcrR family transcriptional regulator compare
ABID97_RS09680 -1.1 -1.1 hypothetical protein compare
ABID97_RS23435 -1.1 -2.5 type II secretion system F family protein compare
ABID97_RS12355 -1.1 -3.3 hemerythrin domain-containing protein compare
ABID97_RS08445 -1.1 -5.2 FimV/HubP family polar landmark protein compare
ABID97_RS07405 -1.1 -5.4 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS09270 -1.1 -2.0 exodeoxyribonuclease VII small subunit compare
ABID97_RS05095 -1.1 -0.7 DUF4150 domain-containing protein compare
ABID97_RS06175 -1.1 -7.4 STAS domain-containing protein compare
ABID97_RS24705 -1.1 -2.9 response regulator compare
ABID97_RS11515 -1.1 -1.7 ATP-binding cassette domain-containing protein compare
ABID97_RS22705 -1.1 -5.3 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS16055 -1.1 -1.3 aromatic-ring-hydroxylating dioxygenase subunit beta compare
ABID97_RS03915 -1.1 -3.5 DUF4124 domain-containing protein compare
ABID97_RS21395 -1.1 -1.7 methylated-DNA--[protein]-cysteine S-methyltransferase compare
ABID97_RS28960 -1.1 -1.9 AMP-binding protein compare
ABID97_RS17055 -1.1 -1.9 YhbY family RNA-binding protein compare
ABID97_RS01825 -1.1 -5.7 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS13390 -1.1 -0.9 NAD-dependent succinate-semialdehyde dehydrogenase compare
ABID97_RS09060 -1.1 -1.2 Flp pilus assembly protein CpaB compare
ABID97_RS04245 -1.0 -1.2 acyl-CoA thioesterase compare
ABID97_RS02200 -1.0 -7.3 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS19495 -1.0 -2.1 glucan biosynthesis protein D compare
ABID97_RS06600 -1.0 -2.8 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS06415 -1.0 -4.6 sigma-54 dependent transcriptional regulator compare
ABID97_RS10910 -1.0 -1.5 MoaD/ThiS family protein compare
ABID97_RS16535 -1.0 -3.2 arginine/lysine/ornithine decarboxylase compare
ABID97_RS08250 -1.0 -3.6 RluA family pseudouridine synthase compare
ABID97_RS18495 -1.0 -0.7 DUF2889 domain-containing protein compare
ABID97_RS25550 -1.0 -1.5 alpha/beta fold hydrolase compare
ABID97_RS03005 -1.0 -3.5 septum site-determining protein MinC compare
ABID97_RS25315 -1.0 -2.4 creatininase family protein compare
ABID97_RS15370 -1.0 -4.9 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS13530 -1.0 -2.3 DUF1329 domain-containing protein compare
ABID97_RS17200 -1.0 -6.8 ribonuclease R compare
ABID97_RS13300 -1.0 -1.7 amino acid ABC transporter permease compare
ABID97_RS17250 -1.0 -3.3 3-hydroxybutyrate dehydrogenase compare
ABID97_RS23800 -1.0 -6.3 ABC transporter substrate-binding protein compare
ABID97_RS18080 -1.0 -0.8 alpha/beta hydrolase compare
ABID97_RS02130 -1.0 -4.3 type IV pilin protein compare
ABID97_RS23940 -1.0 -2.5 cytochrome c oxidase subunit 3 compare
ABID97_RS23380 -1.0 -5.9 lytic transglycosylase domain-containing protein compare
ABID97_RS23655 -1.0 -2.7 YicC/YloC family endoribonuclease compare
ABID97_RS11670 -1.0 -1.4 ABC transporter permease compare
ABID97_RS28200 -1.0 -1.5 AraC family transcriptional regulator compare
ABID97_RS12335 -1.0 -0.8 SDR family NAD(P)-dependent oxidoreductase compare
ABID97_RS26760 -1.0 -1.9 urea ABC transporter permease subunit UrtC compare
ABID97_RS09935 -0.9 -3.7 hypothetical protein compare
ABID97_RS02985 -0.9 -3.1 TetR family transcriptional regulator C-terminal domain-containing protein compare
ABID97_RS02210 -0.9 -4.6 pilin compare
ABID97_RS06020 -0.9 -1.7 hypothetical protein compare
ABID97_RS17685 -0.9 -1.4 ABC transporter ATP-binding protein compare
ABID97_RS23970 -0.9 -4.8 DUF2244 domain-containing protein compare
ABID97_RS13470 -0.9 -1.3 Rieske 2Fe-2S domain-containing protein compare
ABID97_RS22245 -0.9 -1.1 SET domain-containing protein-lysine N-methyltransferase compare
ABID97_RS05900 -0.9 -2.3 enoyl-CoA hydratase compare
ABID97_RS25100 -0.9 -2.9 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS13280 -0.9 -2.0 thiamine pyrophosphate-dependent enzyme compare
ABID97_RS22785 -0.9 -0.9 1,2-phenylacetyl-CoA epoxidase subunit PaaA compare
ABID97_RS23485 -0.9 -0.8 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABID97_RS25935 -0.9 -1.6 Lrp/AsnC family transcriptional regulator compare
ABID97_RS18465 -0.9 -0.9 tyrosine-type recombinase/integrase compare
ABID97_RS24555 -0.9 -3.8 ABC transporter ATP-binding protein compare
ABID97_RS05390 -0.9 -3.5 hypothetical protein compare
ABID97_RS16345 -0.9 -1.9 heme-binding protein compare
ABID97_RS25275 -0.9 -4.0 metallophosphoesterase compare
ABID97_RS21605 -0.9 -1.6 metalloregulator ArsR/SmtB family transcription factor compare
ABID97_RS24315 -0.9 -3.4 TadE/TadG family type IV pilus assembly protein compare
ABID97_RS08885 -0.9 -1.6 aromatic ring-hydroxylating dioxygenase subunit alpha compare
ABID97_RS13295 -0.9 -1.5 amino acid ABC transporter permease compare
ABID97_RS10980 -0.9 -2.3 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB compare
ABID97_RS09665 -0.9 -1.7 tRNA-Met compare
ABID97_RS20675 -0.9 -1.1 LysR family transcriptional regulator compare
ABID97_RS19465 -0.9 -1.1 CoA transferase compare
ABID97_RS23270 -0.9 -3.4 pilus assembly protein PilP compare
ABID97_RS01840 -0.9 -5.0 DUF1631 family protein compare
ABID97_RS20960 -0.9 -2.1 response regulator transcription factor compare
ABID97_RS17570 -0.9 -1.9 DUF6806 family protein compare
ABID97_RS15250 -0.9 -1.6 GPO family capsid scaffolding protein compare
ABID97_RS18770 -0.9 -1.3 FAD-dependent oxidoreductase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sodium propionate in Variovorax sp. OAS795

For carbon source Sodium propionate across organisms