Experiment set1IT020 for Caulobacter crescentus NA1000 Δfur

Compare to:

PYE no stress control

200 most important genes:

  gene name fitness t score description  
CCNA_03783 -4.2 -2.6 cytochrome c biogenesis ABC transporter permease component CcmB compare
CCNA_00953 -4.1 -2.3 flagellar motor switch protein FliN compare
CCNA_03337 -4.0 -2.8 peptidoglycan-associated lipoprotein pal compare
CCNA_03577 -3.9 -2.7 DNA polymerase I compare
CCNA_01496 -3.5 -2.3 2-dehydro-3-deoxyphosphooctonate aldolase compare
CCNA_01118 -3.5 -2.4 hypothetical protein compare
CCNA_02664 -3.4 -2.1 flagellar assembly regulator FliX compare
CCNA_03072 -3.3 -2.3 TetR-family transcriptional regulator compare
CCNA_01275 -3.1 -2.1 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase compare
CCNA_00239 -3.1 -1.9 serine kinase/phosphatase HprK compare
CCNA_02344 -3.0 -2.1 phosphoglycerate mutase compare
CCNA_00349 -2.9 -2.8 integrase/recombinase, XerC-CodV family compare
CCNA_03859 -2.9 -2.8 two-component response regulator cenR compare
CCNA_00893 -2.7 -3.7 helix-turn-helix DNA-binding protein compare
CCNA_01103 -2.7 -5.1 ADP-heptose--LPS heptosyltransferase compare
CCNA_03786 -2.6 -3.6 heme chaperone heme-lyase compare
CCNA_01971 -2.6 -2.5 peptidyl-prolyl cis-trans isomerase compare
CCNA_01676 -2.6 -1.8 hypothetical protein compare
CCNA_03704 -2.5 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
CCNA_00306 -2.5 -6.4 lysophospholipid acyltransferase compare
CCNA_01002 -2.5 -2.9 flagellar biosyntheis protein FliP compare
CCNA_00294 -2.4 -2.7 phosphate transport ATP-binding protein pstB compare
CCNA_03683 -2.4 -2.4 maleylpyruvate isomerase compare
CCNA_00293 -2.4 -3.6 phosphate transport system permease protein pstA compare
CCNA_03755 -2.4 -6.4 bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase compare
CCNA_03650 -2.4 -2.3 mannose-1-phosphate guanyltransferase compare
CCNA_00304 -2.2 -4.2 3-deoxy-D-manno-octulosonic-acid transferase compare
CCNA_02286 -2.2 -1.2 hypothetical protein compare
CCNA_01988 -2.2 -2.1 UDP-N-acetylglucosamine O-acyltransferase LpxA compare
CCNA_01129 -2.2 -2.6 flagellar biosynthesis protein FliQ compare
CCNA_00135 -2.1 -7.5 trypsin-like peptidase compare
CCNA_03336 -2.1 -6.2 Tol system periplasmic component YbgF compare
CCNA_00708 -2.1 -2.5 cobaltochelatase cobT subunit compare
CCNA_03835 -2.1 -2.8 3-oxoacyl-(acyl-carrier-protein) synthase compare
CCNA_03548 -2.1 -6.7 carboxy-terminal processing protease precursor compare
CCNA_03878 -2.0 -3.6 ferrochelatase compare
CCNA_02085 -2.0 -4.0 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase compare
CCNA_02645 -2.0 -2.3 S-adenosyl-methyltransferase MraW compare
CCNA_00197 -2.0 -2.6 LSU ribosomal protein L19P compare
CCNA_01538 -1.9 -1.8 pyruvate phosphate dikinase compare
CCNA_03872 -1.9 -6.5 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase compare
CCNA_02941 -1.8 -1.3 transcription elongation factor greA compare
CCNA_01556 -1.8 -2.7 LacI-family transcriptional regulator compare
CCNA_02329 -1.8 -1.7 exodeoxyribonuclease VII large subunit compare
CCNA_01060 -1.7 -2.8 type I protein secretion ATP-binding protein RsaD compare
CCNA_00134 -1.7 -5.2 surface protein compare
CCNA_01732 -1.7 -2.3 DNA repair protein RadA compare
CCNA_03358 -1.7 -3.1 glyceraldehyde 3-phosphate dehydrogenase compare
CCNA_03931 -1.7 -0.9 hypothetical protein compare
CCNA_01802 -1.7 -0.9 hypothetical protein compare
CCNA_00667 -1.6 -6.6 lipopolysaccharide biosynthesis protein compare
CCNA_00036 -1.6 -2.8 ribosome-binding factor A compare
CCNA_02650 -1.6 -3.8 N-acetyl-anhydromuramyl-L-alanine amidase compare
CCNA_03052 -1.6 -4.2 acyltransferase compare
CCNA_01407 -1.6 -2.9 hypothetical protein compare
CCNA_02572 -1.6 -5.0 adenylosuccinate lyase compare
CCNA_02278 -1.5 -0.9 hypothetical protein compare
CCNA_02320 -1.5 -5.0 2'-deoxycytidine 5'-triphosphate deaminase compare
CCNA_02094 -1.5 -2.6 MviM-like NAD-dependent oxidoreductase compare
CCNA_03702 -1.5 -2.6 SSU ribosomal protein S1P compare
CCNA_00296 -1.4 -6.5 phosphate regulon response regulator PhoB compare
CCNA_01795 -1.4 -2.7 phosphopyruvate hydratase compare
CCNA_00952 -1.4 -4.0 flagellar assembly protein FlbE/FliH compare
CCNA_02217 -1.4 -1.1 hypothetical protein compare
CCNA_03277 -1.4 -4.1 glycosyltransferase compare
CCNA_02849 -1.4 -1.7 cytochrome c-type biogenesis heme chaperone compare
CCNA_00950 -1.4 -5.7 flagellar M-ring protein FliF compare
CCNA_00425 -1.4 -2.7 hypothetical protein compare
CCNA_03013 -1.3 -4.7 alkyl hydroperoxide reductase subunit F compare
CCNA_02251 -1.3 -3.4 methylglutaconyl-CoA hydratase compare
CCNA_00747 -1.3 -5.0 cyclic-di-GMP phosphodiesterase, flagellum assembly factor TipF compare
CCNA_00502 -1.3 -4.0 glycosyl transferase family protein compare
CCNA_03790 -1.3 -1.8 hypothetical protein compare
CCNA_01896 -1.3 -1.0 hypothetical protein compare
CCNA_03136 -1.3 -2.9 flagellar export protein FliJ compare
CCNA_03732 -1.3 -3.3 N-acyl-D-glucosamine 2-epimerase compare
CCNA_03275 -1.3 -2.2 hypothetical protein compare
CCNA_01061 -1.3 -3.1 type I secretion adaptor protein RsaE compare
CCNA_03788 -1.3 -2.6 thiol:disulfide interchange protein tlpA compare
CCNA_01474 -1.2 -4.1 cytochrome cbb3 oxidase maturation protein ccoS compare
CCNA_03415 -1.2 -2.3 aa3 type cytochrome c oxidase subunit IV-related protein compare
CCNA_00257 -1.2 -6.2 adenosylhomocysteinase compare
CCNA_02942 -1.2 -3.8 nucleoside-diphosphate-sugar epimerase compare
CCNA_00956 -1.2 -4.6 flagellar biosynthesis protein FlhA compare
CCNA_00240 -1.2 -1.9 PTS system, IIA component compare
CCNA_03101 -1.2 -2.1 site-specific tyrosine recombinase XerD compare
CCNA_03026 -1.1 -3.6 two-component response regulator petR compare
CCNA_03871 -1.1 -1.8 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
CCNA_03916 -1.1 -1.6 hypothetical protein compare
CCNA_03399 -1.1 -2.9 3-polyprenyl-4-hydroxybenzoate decarboxylase compare
CCNA_02062 -1.1 -3.2 DNA repair protein recN compare
CCNA_03651 -1.1 -2.7 ATP-dependent nuclease subunit B compare
CCNA_03135 -1.0 -3.9 flagellum-specific ATP synthase fliL compare
CCNA_03782 -1.0 -1.5 cytochrome c biogenesis ATP-binding export protein CcmA compare
CCNA_03652 -1.0 -2.8 ATP-dependent nuclease subunit A compare
CCNA_00976 -1.0 -1.7 signal peptide peptidase A compare
CCNA_03975 -1.0 -0.6 hypothetical protein compare
CCNA_00128 -1.0 -1.6 argininosuccinate synthase compare
CCNA_01130 -1.0 -2.6 flagellar biosynthesis protein FliR compare
CCNA_03927 -1.0 -1.3 hypothetical protein compare
CCNA_01449 -0.9 -2.9 fructose-1,6-bisphosphatase, FIG superfamily compare
CCNA_01279 -0.9 -1.5 inorganic polyphosphate/ATP-NAD kinase compare
CCNA_02346 -0.9 -2.4 arabinose-5-phosphate isomerase compare
CCNA_00951 -0.9 -2.8 flagellar motor switch protein FliG compare
CCNA_03201 -0.9 -6.0 adenylosuccinate synthetase compare
CCNA_02704 -0.9 -2.0 NADP-dependent malic enzyme compare
CCNA_03942 -0.9 -2.2 hypothetical protein compare
CCNA_03114 -0.9 -1.7 hypothetical protein compare
CCNA_01692 -0.9 -1.8 GMP synthase GuaA compare
CCNA_01844 -0.9 -3.1 DNA integration/recombination/inversion protein compare
CCNA_03274 -0.9 -0.9 hypothetical protein compare
CCNA_01003 -0.9 -2.9 flagellar biosynthesis protein FliO compare
CCNA_01131 -0.9 -2.8 flagellar biosynthesis protein FlhB compare
CCNA_02847 -0.9 -2.2 cytochrome c-type biogenesis protein ccmH compare
CCNA_01702 -0.8 -3.8 NAD-dependent oxidoreductase compare
CCNA_01968 -0.8 -0.9 pentapeptide repeats containing protein compare
CCNA_00670 -0.8 -2.4 ABC-type polysaccharide/polyol phosphate transport system, ATPase component compare
CCNA_03461 -0.8 -1.9 hypothetical protein compare
CCNA_01461 -0.8 -3.8 hypothetical protein compare
CCNA_00848 -0.8 -1.4 leucine-responsive regulatory protein compare
CCNA_01889 -0.8 -4.3 long-chain-fatty-acid--CoA ligase compare
CCNA_01467 -0.8 -5.2 cytochrome cbb3 oxidase subunit I ccoN compare
CCNA_02468 -0.8 -3.1 hypothetical protein compare
CCNA_01123 -0.8 -4.2 peptide chain release factor RF-3 compare
CCNA_01675 -0.8 -1.0 outer membrane protein compare
CCNA_02390 -0.8 -1.8 phosphoglycolate phosphatase compare
CCNA_03424 -0.8 -4.4 AAA-family response regulator tacA compare
CCNA_02140 -0.8 -3.0 flagellar motor switch protein fliM compare
CCNA_00892 -0.7 -2.5 phosphoenolpyruvate-protein phosphotransferase PtsP compare
CCNA_03910 -0.7 -1.2 hypothetical protein compare
CCNA_03070 -0.7 -2.5 4-oxalocrotonate tautomerase compare
CCNA_03944 -0.7 -0.9 hypothetical protein compare
CCNA_02252 -0.7 -3.6 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_01837 -0.7 -3.6 transposase, IS30 family compare
CCNA_02228 -0.7 -3.3 NTF2 superfamily protein compare
CCNA_02487 -0.7 -4.3 4-hydroxybenzoate 3-monooxygenase compare
CCNA_03726 -0.7 -2.6 3-amino-5-hydroxybenzoic acid synthase family compare
CCNA_03861 -0.7 -1.8 pyridoxal 5'-phosphate dependent enzyme class III compare
CCNA_00292 -0.7 -1.7 phosphate transport system permease protein pstC compare
CCNA_02469 -0.7 -4.4 protein hipA compare
CCNA_03031 -0.7 -2.2 NlpC/P60 family protein compare
CCNA_02248 -0.7 -0.8 hypothetical protein compare
CCNA_01116 -0.7 -2.8 histidine protein kinase DivJ compare
CCNA_02488 -0.7 -2.8 acetate/3-ketoacid CoA transferase, subunit A compare
CCNA_02699 -0.7 -0.8 guanine deaminase compare
CCNA_01168 -0.7 -1.8 3-ketoacyl-CoA thiolase compare
CCNA_02449 -0.7 -2.3 hypothetical protein compare
CCNA_01477 -0.7 -3.9 oxygen-independent coproporphyrinogen-III oxidase hemN compare
CCNA_01912 -0.7 -2.0 protein ydhR precursor compare
CCNA_01137 -0.6 -2.3 ribosomal-protein-alanine acetyltransferase compare
CCNA_03238 -0.6 -4.5 ABC-type spermidine/putrescine transport system, permease component II compare
CCNA_02655 -0.6 -3.0 NTF2 superfamily protein compare
CCNA_02479 -0.6 -3.7 aryl-alcohol dehydrogenase compare
CCNA_02844 -0.6 -0.7 antitoxin protein parD-3 compare
CCNA_R0047 -0.6 -1.0 tRNA-Val compare
CCNA_02064 -0.6 -1.0 UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase compare
CCNA_01911 -0.6 -2.5 glyoxalase family protein compare
CCNA_03649 -0.6 -3.2 Ser/Thr kinase-related phosphotransferase compare
CCNA_00252 -0.6 -3.9 multimodular transpeptidase-transglycosylase PbpX compare
CCNA_03353 -0.6 -4.0 metallophosphatase domain protein compare
CCNA_02481 -0.6 -4.9 TonB-dependent receptor compare
CCNA_03487 -0.6 -1.7 zonular occludens toxin, zot-like protein compare
CCNA_02421 -0.6 -0.9 TonB accessory protein exbB compare
CCNA_03516 -0.6 -1.0 protoheme IX farnesyltransferase coxE compare
CCNA_01685 -0.6 -1.6 hemimethylated DNA-binding protein yccV compare
CCNA_02040 -0.6 -1.1 phosphoserine phosphatase compare
CCNA_00669 -0.6 -3.7 glycosyltransferase family 99 protein WbsX compare
CCNA_00264 -0.6 -2.3 C4-dicarboxylate transport protein compare
CCNA_00093 -0.6 -2.6 hypothetical protein compare
CCNA_00642 -0.6 -2.9 hypothetical protein compare
CCNA_01876 -0.6 -3.5 oxidoreductase compare
CCNA_01211 -0.6 -1.8 MobA-like NTP transferase domain protein compare
CCNA_01476 -0.6 -3.7 CRP-family transcription regulator FtrB compare
CCNA_03464 -0.6 -1.3 glycine cleavage system H protein compare
CCNA_03160 -0.6 -1.3 molybdopterin-guanine dinucleotide biosynthesis protein A compare
CCNA_00671 -0.6 -1.8 ABC-type polysaccharide/polyol phosphate export system, permease component compare
CCNA_01881 -0.6 -2.6 NAD-binding Rossmann superfamily protein compare
CCNA_01358 -0.6 -3.8 myo-inositol catabolism protein IolE compare
CCNA_03747 -0.6 -3.6 glycosyltransferase compare
CCNA_00628 -0.6 -2.6 chemotaxis protein cheY compare
CCNA_02455 -0.6 -2.2 conserved integral membrane protein compare
CCNA_02117 -0.6 -3.0 polyketide cyclase/lipid transport protein compare
CCNA_02002 -0.6 -3.1 methyltransferase compare
CCNA_00519 -0.6 -3.6 hypothetical protein compare
CCNA_02679 -0.6 -2.2 conserved transmembrane protein compare
CCNA_01628 -0.6 -0.9 hypothetical protein compare
CCNA_01475 -0.6 -2.5 OmpW family outer membrane cation channel compare
CCNA_02478 -0.6 -3.2 dihydrolipoamide acetyltransferase component of acetoin cleaving system compare
CCNA_02441 -0.6 -1.7 HTH DNA-binding protein compare
CCNA_01085 -0.6 -1.3 DNA-cytosine methyltransferase compare
CCNA_01757 -0.6 -1.7 dimethyladenosine transferase compare
CCNA_03354 -0.6 -2.1 5-formyltetrahydrofolate cyclo-ligase compare
CCNA_01367 -0.6 -2.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
CCNA_00573 -0.6 -4.4 TonB-dependent receptor compare
CCNA_01497 -0.6 -1.9 ADP-L-glycero-D-manno-heptose-6-epimerase compare
CCNA_02232 -0.6 -4.0 TonB-dependent receptor compare
CCNA_03329 -0.6 -0.7 hypothetical protein compare
CCNA_01909 -0.5 -3.8 ABC transporter substrate-binding protein compare
CCNA_01171 -0.5 -3.1 histidine phosphotransferase ShpA compare
CCNA_01635 -0.5 -2.1 DNA repair protein recO compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 Δfur in no stress control experiments