Experiment set1IT019 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2867 -7.3 -7.1 glycerate kinase compare
EX28DRAFT_2272 -6.9 -14.7 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0331 -6.8 -2.6 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0334 -6.6 -2.6 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_0327 -6.3 -7.4 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_2548 -6.0 -4.1 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_0330 -5.9 -3.3 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_0323 -5.6 -5.3 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_0322 -5.5 -9.0 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_3710 -5.5 -3.8 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_4156 -5.4 -2.1 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0333 -5.3 -8.4 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0321 -5.2 -1.2 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_0286 -4.9 -2.5 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_0329 -4.8 -6.1 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0324 -4.3 -3.6 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0769 -4.2 -1.3 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_0332 -4.0 -7.7 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_2265 -3.8 -1.1 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0328 -3.8 -1.9 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_0325 -3.7 -3.0 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_2270 -3.7 -1.2 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_3285 -3.5 -6.8 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_2252 -3.2 -3.3 TolA protein compare
EX28DRAFT_3711 -3.0 -0.9 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_3643 -3.0 -5.3 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_2958 -2.9 -1.2 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_3675 -2.8 -9.1 transcriptional regulator, LacI family compare
EX28DRAFT_2045 -2.7 -1.0 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_0972 -2.7 -2.3 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_2027 -2.7 -3.4 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_3058 -2.7 -2.7 Signal transduction histidine kinase compare
EX28DRAFT_2945 -2.6 -2.4 tyrosine recombinase XerD compare
EX28DRAFT_2240 -2.6 -3.3 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_0111 -2.5 -1.8 FeS cluster assembly scaffold IscU compare
EX28DRAFT_2046 -2.5 -2.4 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_1650 -2.5 -2.0 ribonuclease T compare
EX28DRAFT_4152 -2.5 -1.5 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_3851 -2.4 -8.5 Transcriptional regulator compare
EX28DRAFT_1841 -2.4 -0.9 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_0312 -2.3 -4.1 phosphate acetyltransferase compare
EX28DRAFT_4191 -2.3 -3.1 small GTP-binding protein domain compare
EX28DRAFT_2298 -2.3 -10.0 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_3645 -2.2 -3.2 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_1986 -2.2 -1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_4341 -2.2 -3.9 Protein-disulfide isomerase compare
EX28DRAFT_3754 -2.1 -1.2 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_0523 -2.1 -1.5 Glycosyltransferase like family 2 compare
EX28DRAFT_4459 -2.1 -8.5 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_2864 -2.0 -6.9 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_1719 -2.0 -1.5 integration host factor, alpha subunit compare
EX28DRAFT_4184 -1.9 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0545 -1.9 -3.4 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_2531 -1.9 -3.0 endopeptidase La compare
EX28DRAFT_2263 -1.9 -4.1 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_2264 -1.9 -6.8 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_2250 -1.9 -3.1 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0125 -1.9 -1.0 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_2963 -1.8 -3.3 RNA compare
EX28DRAFT_3073 -1.8 -7.7 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_3616 -1.8 -3.4 threonine synthase compare
EX28DRAFT_4478 -1.8 -5.5 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_0857 -1.8 -1.4 tRNA compare
EX28DRAFT_0132 -1.7 -5.0 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_3368 -1.7 -1.1 tRNA dimethylallyltransferase compare
EX28DRAFT_0764 -1.7 -3.0 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_2877 -1.7 -8.3 Predicted Rossmann fold nucleotide-binding protein compare
EX28DRAFT_0046 -1.7 -3.7 shikimate dehydrogenase compare
EX28DRAFT_4461 -1.6 -3.8 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_4350 -1.6 -1.3 nitrogen regulation protein NR(I) compare
EX28DRAFT_2541 -1.6 -1.1 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_2774 -1.6 -5.4 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_0092 -1.6 -2.1 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_0166 -1.6 -8.0 polyphosphate kinase 1 compare
EX28DRAFT_0621 -1.6 -4.7 flagellar biosynthetic protein FliS compare
EX28DRAFT_2985 -1.6 -5.8 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_2299 -1.6 -8.8 Transcriptional regulator/sugar kinase compare
EX28DRAFT_0970 -1.6 -3.9 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_3314 -1.6 -0.5 Factor for inversion stimulation Fis, transcriptional activator compare
EX28DRAFT_2677 -1.6 -1.3 hypothetical protein compare
EX28DRAFT_1771 -1.6 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2267 -1.6 -6.3 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_1692 -1.5 -1.2 Biofilm development protein YmgB/AriR compare
EX28DRAFT_1784 -1.5 -3.9 hypothetical protein compare
EX28DRAFT_2050 -1.5 -10.1 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_1382 -1.5 -1.7 transcriptional regulator, TetR family compare
EX28DRAFT_0038 -1.5 -1.6 K+ transport systems, NAD-binding component compare
EX28DRAFT_3217 -1.5 -7.0 tRNA pseudouridine(55) synthase compare
EX28DRAFT_0069 -1.5 -1.4 Superfamily II DNA and RNA helicases compare
EX28DRAFT_0076 -1.4 -2.2 elongation factor 4 compare
EX28DRAFT_4061 -1.4 -4.3 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_2714 -1.4 -6.3 ABC-type uncharacterized transport system, permease component compare
EX28DRAFT_2974 -1.4 -5.0 transketolase, bacterial and yeast compare
EX28DRAFT_0073 -1.4 -1.3 Negative regulator of sigma E activity compare
EX28DRAFT_2530 -1.4 -2.0 Bacterial nucleoid DNA-binding protein compare
EX28DRAFT_1700 -1.4 -1.3 hypothetical protein compare
EX28DRAFT_3297 -1.4 -4.6 ribonuclease, Rne/Rng family compare
EX28DRAFT_0755 -1.4 -4.8 ribonuclease D compare
EX28DRAFT_4421 -1.4 -1.1 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_2271 -1.4 -2.2 hypothetical protein compare
EX28DRAFT_4003 -1.4 -1.3 phosphate ABC transporter, permease protein PstC compare
EX28DRAFT_4120 -1.4 -4.9 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_2938 -1.4 -1.6 tRNA compare
EX28DRAFT_3372 -1.3 -3.9 HflC protein compare
EX28DRAFT_0620 -1.3 -1.4 Flagellar protein FliT compare
EX28DRAFT_1715 -1.3 -2.7 Cell wall-associated hydrolases (invasion-associated proteins) compare
EX28DRAFT_1679 -1.3 -4.9 pyruvate kinase compare
EX28DRAFT_3438 -1.3 -7.5 alpha,alpha-phosphotrehalase compare
EX28DRAFT_0228 -1.3 -1.3 tRNA compare
EX28DRAFT_0526 -1.3 -2.5 hypothetical protein compare
EX28DRAFT_2424 -1.3 -4.4 transcriptional regulator, TetR family compare
EX28DRAFT_0778 -1.3 -1.1 hypothetical protein compare
EX28DRAFT_2452 -1.3 -6.6 transcriptional regulator, LacI family compare
EX28DRAFT_4386 -1.3 -3.0 Signal transduction histidine kinase compare
EX28DRAFT_4153 -1.3 -1.5 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_1573 -1.2 -1.0 hypothetical protein compare
EX28DRAFT_2695 -1.2 -3.0 pseudouridine synthase, RluA family compare
EX28DRAFT_0726 -1.2 -2.5 C-terminal peptidase (prc) compare
EX28DRAFT_0521 -1.2 -1.9 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0529 -1.2 -2.7 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_2259 -1.2 -2.1 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_2651 -1.2 -4.7 glutamate 5-kinase compare
EX28DRAFT_3899 -1.2 -2.7 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_1180 -1.2 -2.6 DNA-binding HTH domain-containing proteins compare
EX28DRAFT_0108 -1.2 -0.9 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_4155 -1.2 -2.4 DNA adenine methylase (dam) compare
EX28DRAFT_2543 -1.2 -2.7 protoheme IX farnesyltransferase compare
EX28DRAFT_3901 -1.2 -3.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_3647 -1.1 -3.4 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_2997 -1.1 -7.3 tRNA (guanine-N(7)-)-methyltransferase compare
EX28DRAFT_2539 -1.1 -3.2 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_1477 -1.1 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3264 -1.1 -4.1 PAS domain S-box compare
EX28DRAFT_0758 -1.1 -2.6 septum site-determining protein MinC compare
EX28DRAFT_0306 -1.1 -7.0 transcriptional regulator, LacI family compare
EX28DRAFT_0272 -1.1 -0.9 phosphohistidine phosphatase, SixA compare
EX28DRAFT_2313 -1.1 -2.3 Putative Mg2+ and Co2+ transporter CorC compare
EX28DRAFT_4318 -1.1 -2.2 Glucose-6-phosphate isomerase compare
EX28DRAFT_0068 -1.1 -1.1 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_2565 -1.1 -5.6 tRNA-guanine transglycosylase compare
EX28DRAFT_1268 -1.1 -1.5 Lysophospholipase L1 and related esterases compare
EX28DRAFT_3434 -1.1 -2.1 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_4384 -1.1 -2.5 Superoxide dismutase compare
EX28DRAFT_4362 -1.1 -4.2 transcriptional regulator, DeoR family compare
EX28DRAFT_1777 -1.0 -6.3 Uncharacterized conserved protein compare
EX28DRAFT_0818 -1.0 -2.1 hypothetical protein compare
EX28DRAFT_0313 -1.0 -2.9 acetate kinase compare
EX28DRAFT_3282 -1.0 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1493 -1.0 -3.3 Transcriptional regulator/sugar kinase compare
EX28DRAFT_4544 -1.0 -1.4 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2268 -1.0 -5.7 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_3883 -1.0 -2.4 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_3449 -1.0 -0.8 Predicted membrane protein compare
EX28DRAFT_0291 -1.0 -2.1 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_2148 -1.0 -3.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0765 -1.0 -6.5 Uncharacterized conserved protein compare
EX28DRAFT_3987 -1.0 -4.7 DNA replication and repair protein RecF compare
EX28DRAFT_1540 -1.0 -2.9 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
EX28DRAFT_4482 -1.0 -3.3 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) compare
EX28DRAFT_3401 -1.0 -1.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_2067 -1.0 -1.1 Transglycosylase SLT domain compare
EX28DRAFT_3259 -1.0 -1.7 Predicted P-loop-containing kinase compare
EX28DRAFT_2269 -1.0 -3.7 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_1250 -1.0 -0.9 Protein of unknown function (DUF421) compare
EX28DRAFT_2075 -1.0 -1.8 type II secretion system protein H compare
EX28DRAFT_0666 -1.0 -3.0 Uncharacterized secreted protein compare
EX28DRAFT_1699 -1.0 -2.0 hypothetical protein compare
EX28DRAFT_2162 -1.0 -1.6 hypothetical protein compare
EX28DRAFT_1305 -1.0 -1.8 hypothetical protein compare
EX28DRAFT_1342 -1.0 -1.0 hypothetical protein compare
EX28DRAFT_4348 -1.0 -1.7 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_2893 -1.0 -3.8 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_3893 -1.0 -2.0 ribonuclease PH compare
EX28DRAFT_2993 -1.0 -2.1 putative oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_3252 -1.0 -2.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
EX28DRAFT_1838 -0.9 -2.9 3-oxoacyl-(acyl-carrier-protein) synthase III compare
EX28DRAFT_4452 -0.9 -1.6 thioredoxin compare
EX28DRAFT_2701 -0.9 -4.8 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2225 -0.9 -3.3 3-carboxymuconate cyclase compare
EX28DRAFT_3507 -0.9 -1.1 Response regulator compare
EX28DRAFT_0732 -0.9 -1.8 YebO-like protein compare
EX28DRAFT_3275 -0.9 -7.0 Glutamate synthase domain 2 compare
EX28DRAFT_0577 -0.9 -2.0 Arabinose efflux permease compare
EX28DRAFT_2033 -0.9 -2.8 pyruvate formate-lyase 1-activating enzyme compare
EX28DRAFT_0149 -0.9 -3.0 Predicted dehydrogenases and related proteins compare
EX28DRAFT_1558 -0.9 -2.7 hypothetical protein compare
EX28DRAFT_2983 -0.9 -5.2 Endonuclease I compare
EX28DRAFT_0305 -0.9 -3.3 Isopentenyldiphosphate isomerase compare
EX28DRAFT_2262 -0.9 -2.8 Transcriptional regulators compare
EX28DRAFT_2540 -0.9 -2.9 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_3778 -0.9 -1.5 Uncharacterised protein family (UPF0253) compare
EX28DRAFT_0001 -0.9 -1.1 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_0374 -0.9 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0632 -0.9 -1.9 Protein of unknown function (DUF2594) compare
EX28DRAFT_4297 -0.9 -0.6 cell division ATP-binding protein FtsE compare
EX28DRAFT_1031 -0.9 -0.9 Protein of unknown function (DUF2566) compare
EX28DRAFT_0528 -0.9 -0.9 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase compare
EX28DRAFT_0411 -0.9 -4.3 Uncharacterized membrane protein compare
EX28DRAFT_2010 -0.9 -4.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0918 -0.9 -1.0 Ogr/Delta-like zinc finger compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in in planta experiments

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days across organisms