Experiment set1IT018 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_0327 -8.3 -5.8 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_2867 -7.3 -7.1 glycerate kinase compare
EX28DRAFT_0333 -6.9 -6.8 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0331 -6.8 -2.9 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0324 -6.7 -3.3 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0330 -6.7 -2.8 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_2272 -6.7 -13.5 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0334 -6.6 -2.9 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_0328 -6.5 -1.6 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_0323 -6.2 -5.7 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_2548 -5.9 -4.5 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_0325 -5.8 -4.3 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_0322 -5.7 -9.6 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_0972 -5.7 -2.4 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_3710 -5.5 -3.8 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_4156 -5.5 -2.3 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0321 -5.2 -1.3 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_0332 -4.7 -9.4 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0329 -4.3 -5.2 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0769 -4.2 -1.5 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_2265 -3.8 -1.2 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_3285 -3.8 -7.2 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_2252 -3.4 -3.6 TolA protein compare
EX28DRAFT_0526 -3.4 -3.8 hypothetical protein compare
EX28DRAFT_2045 -3.3 -1.1 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_2945 -3.3 -3.1 tyrosine recombinase XerD compare
EX28DRAFT_4152 -3.2 -1.6 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_2958 -3.1 -1.0 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_0778 -3.1 -1.7 hypothetical protein compare
EX28DRAFT_3711 -3.0 -1.0 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_3282 -3.0 -1.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2531 -2.9 -5.4 endopeptidase La compare
EX28DRAFT_0523 -2.9 -1.7 Glycosyltransferase like family 2 compare
EX28DRAFT_3369 -2.9 -1.4 RNA chaperone Hfq compare
EX28DRAFT_1719 -2.8 -1.5 integration host factor, alpha subunit compare
EX28DRAFT_3675 -2.7 -8.9 transcriptional regulator, LacI family compare
EX28DRAFT_2250 -2.7 -3.8 peptidoglycan-associated lipoprotein compare
EX28DRAFT_3851 -2.7 -12.2 Transcriptional regulator compare
EX28DRAFT_4341 -2.7 -4.2 Protein-disulfide isomerase compare
EX28DRAFT_2046 -2.6 -3.1 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_2258 -2.6 -2.0 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_2240 -2.6 -3.5 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_1986 -2.5 -1.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_0620 -2.5 -1.9 Flagellar protein FliT compare
EX28DRAFT_0531 -2.5 -9.3 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_3645 -2.4 -5.4 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_4459 -2.4 -9.2 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_1268 -2.3 -2.2 Lysophospholipase L1 and related esterases compare
EX28DRAFT_2877 -2.3 -10.8 Predicted Rossmann fold nucleotide-binding protein compare
EX28DRAFT_3643 -2.3 -2.9 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_3611 -2.3 -1.0 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_2298 -2.3 -10.5 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_0517 -2.3 -5.4 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
EX28DRAFT_3368 -2.2 -1.3 tRNA dimethylallyltransferase compare
EX28DRAFT_0111 -2.2 -1.9 FeS cluster assembly scaffold IscU compare
EX28DRAFT_3879 -2.1 -4.0 Glycosyltransferase compare
EX28DRAFT_2264 -2.1 -10.7 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_0132 -2.1 -6.1 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_4155 -2.1 -3.0 DNA adenine methylase (dam) compare
EX28DRAFT_0312 -2.0 -4.1 phosphate acetyltransferase compare
EX28DRAFT_0857 -2.0 -1.6 tRNA compare
EX28DRAFT_3073 -2.0 -5.5 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_0726 -2.0 -3.5 C-terminal peptidase (prc) compare
EX28DRAFT_0073 -2.0 -1.7 Negative regulator of sigma E activity compare
EX28DRAFT_2259 -2.0 -4.2 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_0521 -2.0 -2.5 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0286 -1.9 -1.8 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_2543 -1.9 -7.0 protoheme IX farnesyltransferase compare
EX28DRAFT_0091 -1.9 -1.5 hypothetical protein compare
EX28DRAFT_3058 -1.8 -4.0 Signal transduction histidine kinase compare
EX28DRAFT_2299 -1.8 -7.3 Transcriptional regulator/sugar kinase compare
EX28DRAFT_3883 -1.8 -4.3 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_1031 -1.8 -1.7 Protein of unknown function (DUF2566) compare
EX28DRAFT_1650 -1.8 -1.9 ribonuclease T compare
EX28DRAFT_0092 -1.7 -2.2 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_1700 -1.7 -1.5 hypothetical protein compare
EX28DRAFT_2864 -1.7 -3.7 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_2724 -1.7 -2.2 RNA compare
EX28DRAFT_2263 -1.7 -3.3 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_0545 -1.7 -2.8 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_3616 -1.7 -5.2 threonine synthase compare
EX28DRAFT_2985 -1.6 -5.2 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_2963 -1.6 -2.6 RNA compare
EX28DRAFT_4003 -1.6 -1.6 phosphate ABC transporter, permease protein PstC compare
EX28DRAFT_0755 -1.6 -6.5 ribonuclease D compare
EX28DRAFT_0697 -1.6 -2.5 ABC-type Mn2+/Zn2+ transport systems, permease components compare
EX28DRAFT_4077 -1.6 -1.3 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_0306 -1.6 -11.3 transcriptional regulator, LacI family compare
EX28DRAFT_0125 -1.5 -0.9 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_0779 -1.5 -3.1 hypothetical protein compare
EX28DRAFT_4386 -1.5 -3.7 Signal transduction histidine kinase compare
EX28DRAFT_2974 -1.5 -6.3 transketolase, bacterial and yeast compare
EX28DRAFT_4461 -1.5 -3.7 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_0038 -1.5 -1.5 K+ transport systems, NAD-binding component compare
EX28DRAFT_2540 -1.5 -3.1 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_2027 -1.5 -4.4 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_1382 -1.5 -1.9 transcriptional regulator, TetR family compare
EX28DRAFT_2452 -1.5 -7.5 transcriptional regulator, LacI family compare
EX28DRAFT_0166 -1.4 -8.6 polyphosphate kinase 1 compare
EX28DRAFT_2997 -1.4 -7.1 tRNA (guanine-N(7)-)-methyltransferase compare
EX28DRAFT_0529 -1.4 -4.1 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_2723 -1.4 -2.3 SsrA-binding protein compare
EX28DRAFT_4350 -1.4 -1.3 nitrogen regulation protein NR(I) compare
EX28DRAFT_0764 -1.4 -3.0 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_2938 -1.4 -1.7 tRNA compare
EX28DRAFT_1019 -1.4 -2.2 Putative hemolysin compare
EX28DRAFT_0765 -1.4 -9.4 Uncharacterized conserved protein compare
EX28DRAFT_4505 -1.4 -3.2 transcription elongation factor/antiterminator RfaH compare
EX28DRAFT_0076 -1.4 -2.4 elongation factor 4 compare
EX28DRAFT_0621 -1.4 -4.2 flagellar biosynthetic protein FliS compare
EX28DRAFT_1777 -1.4 -8.8 Uncharacterized conserved protein compare
EX28DRAFT_3647 -1.3 -4.7 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_3372 -1.3 -2.8 HflC protein compare
EX28DRAFT_4120 -1.3 -4.7 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_3434 -1.3 -3.2 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_2424 -1.3 -4.1 transcriptional regulator, TetR family compare
EX28DRAFT_4478 -1.3 -3.8 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_1841 -1.3 -0.7 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_0046 -1.3 -2.9 shikimate dehydrogenase compare
EX28DRAFT_4153 -1.3 -1.8 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_1608 -1.3 -3.9 fumarase, class II (EC 4.2.1.2) compare
EX28DRAFT_4544 -1.3 -1.8 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2270 -1.3 -0.9 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_3217 -1.3 -6.6 tRNA pseudouridine(55) synthase compare
EX28DRAFT_4191 -1.2 -2.5 small GTP-binding protein domain compare
EX28DRAFT_0528 -1.2 -1.3 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase compare
EX28DRAFT_2162 -1.2 -2.0 hypothetical protein compare
EX28DRAFT_2050 -1.2 -8.9 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_3371 -1.2 -4.1 HflK protein compare
EX28DRAFT_1180 -1.2 -2.0 DNA-binding HTH domain-containing proteins compare
EX28DRAFT_1250 -1.2 -1.1 Protein of unknown function (DUF421) compare
EX28DRAFT_2541 -1.2 -1.0 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_4184 -1.2 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1059 -1.2 -1.7 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog compare
EX28DRAFT_2262 -1.2 -3.0 Transcriptional regulators compare
EX28DRAFT_4482 -1.2 -2.6 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) compare
EX28DRAFT_3079 -1.2 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3264 -1.2 -4.2 PAS domain S-box compare
EX28DRAFT_1510 -1.2 -1.9 hypothetical protein compare
EX28DRAFT_2109 -1.2 -2.9 Reverse transcriptase (RNA-dependent DNA polymerase) compare
EX28DRAFT_3297 -1.2 -4.2 ribonuclease, Rne/Rng family compare
EX28DRAFT_4348 -1.2 -2.0 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_4061 -1.2 -3.9 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_2033 -1.2 -2.4 pyruvate formate-lyase 1-activating enzyme compare
EX28DRAFT_4318 -1.2 -3.0 Glucose-6-phosphate isomerase compare
EX28DRAFT_2774 -1.2 -4.0 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_2271 -1.1 -1.8 hypothetical protein compare
EX28DRAFT_4271 -1.1 -0.6 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_2267 -1.1 -4.1 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_2668 -1.1 -7.4 Acyl-CoA dehydrogenases compare
EX28DRAFT_2859 -1.1 -2.7 hypothetical protein compare
EX28DRAFT_3449 -1.1 -1.1 Predicted membrane protein compare
EX28DRAFT_1784 -1.1 -3.3 hypothetical protein compare
EX28DRAFT_4475 -1.1 -3.1 Adenylate cyclase compare
EX28DRAFT_3849 -1.1 -2.4 PTS system, mannitol-specific IIC component compare
EX28DRAFT_2714 -1.1 -4.1 ABC-type uncharacterized transport system, permease component compare
EX28DRAFT_1776 -1.1 -6.2 putative serine protein kinase, PrkA compare
EX28DRAFT_0116 -1.0 -1.9 FeS assembly protein IscX compare
EX28DRAFT_1493 -1.0 -4.9 Transcriptional regulator/sugar kinase compare
EX28DRAFT_1596 -1.0 -0.7 Protein of unknown function (DUF1019) compare
EX28DRAFT_1715 -1.0 -2.6 Cell wall-associated hydrolases (invasion-associated proteins) compare
EX28DRAFT_0272 -1.0 -0.9 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0732 -1.0 -2.3 YebO-like protein compare
EX28DRAFT_4457 -1.0 -4.1 nucleotide sugar dehydrogenase compare
EX28DRAFT_3901 -1.0 -4.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_1558 -1.0 -3.0 hypothetical protein compare
EX28DRAFT_1844 -1.0 -1.1 pseudouridine synthase, RluA family compare
EX28DRAFT_2485 -1.0 -3.3 DNA replication and repair protein RecR compare
EX28DRAFT_3438 -1.0 -5.3 alpha,alpha-phosphotrehalase compare
EX28DRAFT_1332 -1.0 -1.3 Phage minor tail protein compare
EX28DRAFT_2400 -1.0 -0.8 Cold shock proteins compare
EX28DRAFT_1477 -1.0 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0129 -1.0 -0.9 RNA compare
EX28DRAFT_2269 -1.0 -4.0 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_2990 -0.9 -1.3 Predicted integral membrane protein compare
EX28DRAFT_1692 -0.9 -0.9 Biofilm development protein YmgB/AriR compare
EX28DRAFT_0068 -0.9 -0.7 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_4452 -0.9 -1.3 thioredoxin compare
EX28DRAFT_3754 -0.9 -0.8 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_3899 -0.9 -2.0 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_2313 -0.9 -2.6 Putative Mg2+ and Co2+ transporter CorC compare
EX28DRAFT_0818 -0.9 -1.7 hypothetical protein compare
EX28DRAFT_0970 -0.9 -3.9 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_4135 -0.9 -1.7 hypothetical protein compare
EX28DRAFT_0758 -0.9 -2.2 septum site-determining protein MinC compare
EX28DRAFT_2331 -0.9 -5.8 D-alanyl-D-alanine carboxypeptidase compare
EX28DRAFT_2268 -0.9 -4.8 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_2530 -0.9 -1.4 Bacterial nucleoid DNA-binding protein compare
EX28DRAFT_0724 -0.9 -0.7 GAF domain-containing protein compare
EX28DRAFT_2565 -0.9 -4.4 tRNA-guanine transglycosylase compare
EX28DRAFT_2677 -0.9 -1.0 hypothetical protein compare
EX28DRAFT_0957 -0.9 -3.9 transcriptional regulator, DeoR family compare
EX28DRAFT_4154 -0.9 -2.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1626 -0.9 -1.3 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_2993 -0.9 -2.8 putative oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_1342 -0.9 -0.9 hypothetical protein compare
EX28DRAFT_3002 -0.9 -2.9 triphosphoribosyl-dephospho-CoA synthase CitG compare
EX28DRAFT_0291 -0.9 -1.9 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_0228 -0.9 -1.1 tRNA compare
EX28DRAFT_1245 -0.9 -4.4 Cytochrome bd-type quinol oxidase, subunit 1 compare


Specific Phenotypes

For 3 genes in this experiment

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days in Enterobacter asburiae PDN3

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days across organisms