Experiment set1IT017 for Variovorax sp. OAS795

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS15375 -8.4 -5.8 DUF934 domain-containing protein compare
ABID97_RS15380 -7.2 -12.1 nitrite/sulfite reductase compare
ABID97_RS03655 -6.9 -4.6 glycolate oxidase subunit GlcE compare
ABID97_RS01565 -6.8 -12.2 DNA starvation/stationary phase protection protein compare
ABID97_RS16595 -6.7 -5.2 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS20615 -6.7 -7.0 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS23225 -6.2 -15.6 glutamate synthase-related protein compare
ABID97_RS08220 -6.2 -7.4 phosphoenolpyruvate carboxylase compare
ABID97_RS06575 -6.1 -7.3 trehalose-phosphatase compare
ABID97_RS10815 -5.8 -17.8 phosphoenolpyruvate synthase compare
ABID97_RS08010 -5.6 -8.6 alpha-hydroxy acid oxidase conserved
ABID97_RS16600 -5.5 -9.3 CysB family HTH-type transcriptional regulator compare
ABID97_RS05260 -4.9 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS05250 -4.8 -4.7 anthranilate synthase component I compare
ABID97_RS10885 -4.8 -5.7 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS14105 -4.8 -3.3 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS02285 -4.7 -19.1 response regulator transcription factor compare
ABID97_RS23230 -4.7 -16.3 transposase compare
ABID97_RS25080 -4.7 -18.3 MFS transporter compare
ABID97_RS07000 -4.4 -10.7 threonine ammonia-lyase, biosynthetic compare
ABID97_RS02290 -4.4 -17.6 sensor histidine kinase N-terminal domain-containing protein compare
ABID97_RS14115 -4.2 -6.4 dihydrolipoyl dehydrogenase compare
ABID97_RS09180 -4.2 -5.0 DNA polymerase I compare
ABID97_RS08425 -4.1 -5.6 tryptophan synthase subunit alpha compare
ABID97_RS14095 -4.1 -12.7 PAS domain S-box protein compare
ABID97_RS14100 -4.0 -10.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS13990 -3.9 -3.8 amino acid aminotransferase compare
ABID97_RS07430 -3.9 -8.8 pantoate--beta-alanine ligase compare
ABID97_RS25015 -3.9 -3.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS15370 -3.9 -13.7 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS06345 -3.8 -3.7 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS02600 -3.8 -3.7 homoserine O-acetyltransferase compare
ABID97_RS12180 -3.7 -2.5 hypothetical protein compare
ABID97_RS15665 -3.6 -10.1 [protein-PII] uridylyltransferase compare
ABID97_RS07435 -3.6 -10.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS07405 -3.6 -16.7 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS05275 -3.6 -2.4 anthranilate phosphoribosyltransferase compare
ABID97_RS13860 -3.5 -9.8 hypothetical protein compare
ABID97_RS15365 -3.3 -5.4 sulfate adenylyltransferase subunit CysD compare
ABID97_RS16535 -3.2 -10.0 arginine/lysine/ornithine decarboxylase compare
ABID97_RS07775 -3.1 -4.8 phosphoribosylglycinamide formyltransferase compare
ABID97_RS05755 -3.1 -2.1 glycosyltransferase compare
ABID97_RS08015 -3.0 -6.5 LysR substrate-binding domain-containing protein compare
ABID97_RS23450 -3.0 -4.6 MBOAT family protein compare
ABID97_RS15360 -2.9 -7.9 GTP-binding protein compare
ABID97_RS03650 -2.9 -14.2 FAD-linked oxidase C-terminal domain-containing protein conserved
ABID97_RS23455 -2.9 -4.4 hypothetical protein compare
ABID97_RS23220 -2.9 -2.3 glutamate synthase subunit beta compare
ABID97_RS05280 -2.9 -2.0 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS03660 -2.9 -14.1 glycolate oxidase subunit GlcF conserved
ABID97_RS08435 -2.8 -1.9 phosphoribosylanthranilate isomerase compare
ABID97_RS05765 -2.8 -1.9 UDP-glucose 4-epimerase GalE compare
ABID97_RS21150 -2.8 -11.7 FAD-dependent oxidoreductase compare
ABID97_RS15470 -2.7 -3.8 NADPH-dependent FMN reductase compare
ABID97_RS05365 -2.7 -5.0 DUF4390 domain-containing protein compare
ABID97_RS04500 -2.7 -1.8 HPr(Ser) kinase/phosphatase compare
ABID97_RS03680 -2.6 -8.5 lysophospholipid transporter LplT compare
ABID97_RS15465 -2.6 -14.5 sulfate ABC transporter substrate-binding protein compare
ABID97_RS14160 -2.5 -8.3 cell division protein ZapE compare
ABID97_RS05370 -2.5 -6.2 ATP-binding protein compare
ABID97_RS05750 -2.5 -2.9 glycosyltransferase compare
ABID97_RS23425 -2.5 -2.2 tRNA-Pro compare
ABID97_RS17850 -2.5 -1.3 tetratricopeptide repeat protein compare
ABID97_RS28990 -2.4 -6.4 aspartate 1-decarboxylase compare
ABID97_RS06450 -2.3 -2.2 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS03805 -2.3 -1.8 ATP-binding protein compare
ABID97_RS00255 -2.3 -13.1 type IV pilus twitching motility protein PilT compare
ABID97_RS03910 -2.3 -2.1 orotate phosphoribosyltransferase compare
ABID97_RS09630 -2.2 -3.1 hypothetical protein compare
ABID97_RS23915 -2.2 -4.4 heme o synthase compare
ABID97_RS14090 -2.2 -1.5 response regulator transcription factor compare
ABID97_RS25525 -2.2 -5.2 LacI family DNA-binding transcriptional regulator compare
ABID97_RS09620 -2.2 -4.0 hypothetical protein compare
ABID97_RS02135 -2.2 -8.8 GspH/FimT family pseudopilin compare
ABID97_RS24045 -2.2 -3.3 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS08480 -2.2 -1.5 citrate synthase compare
ABID97_RS20095 -2.2 -2.5 DNA topoisomerase IV subunit B compare
ABID97_RS05670 -2.1 -1.5 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS23440 -2.1 -11.3 A24 family peptidase compare
ABID97_RS07410 -2.1 -6.6 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS07415 -2.1 -11.6 quinolinate synthase NadA compare
ABID97_RS24170 -2.1 -6.5 ATP-binding protein compare
ABID97_RS06520 -2.0 -1.9 SAM-dependent methyltransferase compare
ABID97_RS14920 -2.0 -11.2 IclR family transcriptional regulator compare
ABID97_RS04890 -2.0 -6.9 cation:proton antiporter compare
ABID97_RS04505 -2.0 -2.9 ferric iron uptake transcriptional regulator compare
ABID97_RS02110 -2.0 -12.9 type IV pilus modification protein PilV compare
ABID97_RS17590 -2.0 -12.3 endopeptidase La compare
ABID97_RS08710 -1.9 -6.6 polynucleotide adenylyltransferase PcnB compare
ABID97_RS03800 -1.9 -3.1 O-antigen ligase family protein compare
ABID97_RS02115 -1.9 -10.1 PilW family protein compare
ABID97_RS10295 -1.9 -1.9 winged helix-turn-helix transcriptional regulator compare
ABID97_RS01650 -1.9 -1.3 orotidine-5'-phosphate decarboxylase compare
ABID97_RS02125 -1.9 -14.9 PilC/PilY family type IV pilus protein compare
ABID97_RS09935 -1.9 -9.3 hypothetical protein compare
ABID97_RS15490 -1.9 -5.4 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS12460 -1.8 -2.9 acetoacetyl-CoA reductase compare
ABID97_RS02120 -1.8 -10.4 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS08430 -1.8 -1.7 tryptophan synthase subunit beta compare
ABID97_RS04885 -1.8 -12.8 YbdK family carboxylate-amine ligase compare
ABID97_RS08775 -1.8 -2.3 ribosome small subunit-dependent GTPase A compare
ABID97_RS06365 -1.7 -1.8 TlpA disulfide reductase family protein compare
ABID97_RS02145 -1.7 -7.1 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS19375 -1.7 -5.5 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS17635 -1.7 -4.7 presqualene diphosphate synthase HpnD compare
ABID97_RS12140 -1.7 -7.3 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS13865 -1.7 -4.0 hypothetical protein compare
ABID97_RS06460 -1.7 -2.2 sigma 54-interacting transcriptional regulator compare
ABID97_RS19065 -1.7 -4.2 GntR family transcriptional regulator compare
ABID97_RS22135 -1.7 -1.4 LysR family transcriptional regulator compare
ABID97_RS08445 -1.7 -8.1 FimV/HubP family polar landmark protein compare
ABID97_RS02455 -1.7 -4.9 nucleotidyltransferase family protein compare
ABID97_RS23435 -1.7 -10.1 type II secretion system F family protein compare
ABID97_RS27865 -1.7 -2.0 alpha/beta hydrolase family protein compare
ABID97_RS09595 -1.6 -1.5 Arc family DNA-binding protein compare
ABID97_RS14625 -1.6 -6.1 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS23430 -1.6 -10.5 type IV-A pilus assembly ATPase PilB compare
ABID97_RS20940 -1.6 -2.0 CBS domain-containing protein compare
ABID97_RS20610 -1.6 -8.6 DNA-binding protein YbiB compare
ABID97_RS24705 -1.6 -4.8 response regulator compare
ABID97_RS09940 -1.6 -4.8 nitrogen regulation protein NR(II) compare
ABID97_RS03110 -1.6 -5.8 helix-turn-helix transcriptional regulator compare
ABID97_RS07440 -1.6 -9.5 L-aspartate oxidase compare
ABID97_RS23935 -1.6 -1.9 twin transmembrane helix small protein compare
ABID97_RS15480 -1.6 -7.6 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS01840 -1.6 -10.5 DUF1631 family protein compare
ABID97_RS28220 -1.5 -1.9 SDR family oxidoreductase compare
ABID97_RS13245 -1.5 -1.4 XRE family transcriptional regulator compare
ABID97_RS06160 -1.5 -7.4 GTP-binding protein compare
ABID97_RS20520 -1.5 -1.4 polyribonucleotide nucleotidyltransferase compare
ABID97_RS03630 -1.5 -5.4 P-II family nitrogen regulator compare
ABID97_RS01825 -1.5 -10.9 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS02130 -1.5 -9.8 type IV pilin protein compare
ABID97_RS13325 -1.5 -1.5 antibiotic biosynthesis monooxygenase compare
ABID97_RS16750 -1.4 -8.6 Rid family hydrolase compare
ABID97_RS07500 -1.4 -2.0 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS03915 -1.4 -7.5 DUF4124 domain-containing protein compare
ABID97_RS10705 -1.4 -2.4 H-NS histone family protein compare
ABID97_RS02140 -1.4 -5.5 sugar transferase compare
ABID97_RS19220 -1.4 -1.6 DNA polymerase Y family protein compare
ABID97_RS03125 -1.4 -7.0 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS18495 -1.3 -1.4 DUF2889 domain-containing protein compare
ABID97_RS15995 -1.3 -6.0 PilZ domain-containing protein compare
ABID97_RS16785 -1.3 -2.3 transporter compare
ABID97_RS23650 -1.3 -9.0 serine/threonine-protein kinase compare
ABID97_RS16985 -1.3 -2.9 transcriptional repressor LexA compare
ABID97_RS06600 -1.3 -4.0 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS18205 -1.3 -3.5 XRE family transcriptional regulator compare
ABID97_RS06175 -1.3 -10.6 STAS domain-containing protein compare
ABID97_RS20020 -1.3 -2.9 LacI family DNA-binding transcriptional regulator compare
ABID97_RS06315 -1.3 -9.2 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS21945 -1.3 -3.3 hemolysin family protein compare
ABID97_RS02460 -1.3 -10.1 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS22705 -1.3 -7.0 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS16695 -1.3 -7.7 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS06415 -1.3 -8.0 sigma-54 dependent transcriptional regulator compare
ABID97_RS16690 -1.3 -4.0 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS24370 -1.2 -2.8 DUF1841 family protein compare
ABID97_RS14200 -1.2 -6.4 pseudouridine synthase compare
ABID97_RS23270 -1.2 -6.7 pilus assembly protein PilP compare
ABID97_RS19955 -1.2 -1.3 glycerol-3-phosphate dehydrogenase compare
ABID97_RS13170 -1.2 -1.8 ABC transporter ATP-binding protein compare
ABID97_RS15580 -1.2 -3.8 sulfate ABC transporter permease subunit CysW compare
ABID97_RS07630 -1.2 -2.9 cytochrome o ubiquinol oxidase subunit III compare
ABID97_RS28635 -1.2 -3.4 IclR family transcriptional regulator compare
ABID97_RS01645 -1.2 -5.2 helix-turn-helix transcriptional regulator compare
ABID97_RS13450 -1.2 -2.3 TetR/AcrR family transcriptional regulator compare
ABID97_RS17055 -1.2 -3.7 YhbY family RNA-binding protein compare
ABID97_RS24690 -1.2 -6.1 methyl-accepting chemotaxis protein compare
ABID97_RS23380 -1.1 -8.8 lytic transglycosylase domain-containing protein compare
ABID97_RS09945 -1.1 -4.7 nitrogen regulation protein NR(I) compare
ABID97_RS25405 -1.1 -6.9 16S ribosomal RNA compare
ABID97_RS23280 -1.1 -4.3 PilN domain-containing protein compare
ABID97_RS16470 -1.1 -1.6 translational GTPase TypA compare
ABID97_RS14975 -1.1 -3.7 hypothetical protein compare
ABID97_RS02200 -1.1 -9.4 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS12415 -1.1 -8.1 class I poly(R)-hydroxyalkanoic acid synthase compare
ABID97_RS25690 -1.1 -1.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABID97_RS04610 -1.1 -4.8 potassium transporter Kup compare
ABID97_RS22030 -1.1 -4.8 DEAD/DEAH box helicase compare
ABID97_RS08360 -1.1 -3.5 DUF4845 domain-containing protein compare
ABID97_RS14665 -1.1 -2.1 UvrD-helicase domain-containing protein compare
ABID97_RS02210 -1.1 -5.7 pilin compare
ABID97_RS02605 -1.1 -7.5 TMEM165/GDT1 family protein compare
ABID97_RS17225 -1.1 -6.9 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS06275 -1.1 -1.1 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS10695 -1.1 -4.6 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS05820 -1.1 -3.4 FadR/GntR family transcriptional regulator compare
ABID97_RS27165 -1.1 -1.8 DUF4279 domain-containing protein compare
ABID97_RS14505 -1.1 -8.2 hypothetical protein compare
ABID97_RS09570 -1.0 -2.7 hypothetical protein compare
ABID97_RS24920 -1.0 -1.2 Holliday junction branch migration protein RuvA compare
ABID97_RS02420 -1.0 -5.8 protealysin inhibitor emfourin compare
ABID97_RS17970 -1.0 -5.3 protein TolQ compare
ABID97_RS23275 -1.0 -5.0 type 4a pilus biogenesis protein PilO compare
ABID97_RS23940 -1.0 -4.2 cytochrome c oxidase subunit 3 compare
ABID97_RS16935 -1.0 -3.0 DUF192 domain-containing protein compare
ABID97_RS23285 -1.0 -6.8 pilus assembly protein PilM compare
ABID97_RS19630 -1.0 -0.9 TRAP transporter small permease compare
ABID97_RS23790 -1.0 -3.8 ATP-binding cassette domain-containing protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source Sodium D,L-Lactate in Variovorax sp. OAS795

For carbon source Sodium D,L-Lactate across organisms