Experiment set1IT017 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_0325 -7.2 -3.5 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_2867 -6.9 -4.7 glycerate kinase compare
EX28DRAFT_0322 -6.2 -8.6 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_0324 -6.0 -2.6 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0328 -6.0 -1.3 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_0334 -5.9 -2.3 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_0038 -5.7 -2.2 K+ transport systems, NAD-binding component compare
EX28DRAFT_0333 -5.5 -7.1 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0523 -5.4 -1.2 Glycosyltransferase like family 2 compare
EX28DRAFT_0323 -5.4 -4.2 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_2252 -5.4 -2.1 TolA protein compare
EX28DRAFT_0329 -5.3 -6.5 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0327 -5.2 -4.6 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_0330 -5.1 -2.8 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_2548 -4.9 -3.8 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_3754 -4.8 -1.1 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_0321 -4.7 -1.0 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_4156 -4.7 -1.8 ribulose-phosphate 3-epimerase compare
EX28DRAFT_2272 -4.7 -11.5 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0332 -4.7 -9.7 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0331 -4.7 -2.2 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_3710 -4.7 -4.5 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_2263 -4.6 -4.8 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_3675 -4.5 -8.0 transcriptional regulator, LacI family compare
EX28DRAFT_0111 -4.4 -1.4 FeS cluster assembly scaffold IscU compare
EX28DRAFT_4386 -4.1 -3.3 Signal transduction histidine kinase compare
EX28DRAFT_2298 -4.1 -9.3 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_2945 -3.9 -1.7 tyrosine recombinase XerD compare
EX28DRAFT_0306 -3.9 -13.6 transcriptional regulator, LacI family compare
EX28DRAFT_0132 -3.9 -3.9 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_1841 -3.8 -0.8 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_0769 -3.7 -1.1 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_2585 -3.6 -2.0 pyrroline-5-carboxylate reductase compare
EX28DRAFT_3285 -3.6 -6.2 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_2299 -3.6 -9.7 Transcriptional regulator/sugar kinase compare
EX28DRAFT_0693 -3.5 -1.1 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_2724 -3.5 -1.8 RNA compare
EX28DRAFT_2027 -3.5 -4.6 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_3851 -3.5 -9.1 Transcriptional regulator compare
EX28DRAFT_3645 -3.5 -3.4 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_2265 -3.3 -1.0 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_3643 -3.3 -3.8 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_0857 -3.3 -1.2 tRNA compare
EX28DRAFT_1382 -3.2 -1.3 transcriptional regulator, TetR family compare
EX28DRAFT_0046 -3.2 -3.5 shikimate dehydrogenase compare
EX28DRAFT_4350 -3.2 -1.2 nitrogen regulation protein NR(I) compare
EX28DRAFT_1986 -3.1 -1.3 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_1650 -3.1 -1.5 ribonuclease T compare
EX28DRAFT_4419 -3.1 -2.7 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_0545 -3.1 -3.0 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_1719 -3.1 -0.9 integration host factor, alpha subunit compare
EX28DRAFT_3282 -2.8 -1.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0073 -2.8 -1.2 Negative regulator of sigma E activity compare
EX28DRAFT_4459 -2.8 -6.4 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_0125 -2.8 -0.9 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_2864 -2.8 -6.1 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_2138 -2.8 -4.6 molybdopterin synthase sulfurylase MoeB compare
EX28DRAFT_2958 -2.8 -0.8 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_2264 -2.7 -9.0 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_4153 -2.7 -2.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_4077 -2.7 -0.8 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_0108 -2.7 -1.0 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_2589 -2.6 -0.8 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_2250 -2.6 -2.7 peptidoglycan-associated lipoprotein compare
EX28DRAFT_3711 -2.6 -0.8 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_2543 -2.6 -4.4 protoheme IX farnesyltransferase compare
EX28DRAFT_1396 -2.5 -1.0 Amidases related to nicotinamidase compare
EX28DRAFT_2267 -2.5 -4.7 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_4120 -2.5 -3.2 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_3410 -2.5 -2.4 hypothetical protein compare
EX28DRAFT_4457 -2.5 -4.5 nucleotide sugar dehydrogenase compare
EX28DRAFT_4362 -2.5 -5.6 transcriptional regulator, DeoR family compare
EX28DRAFT_2774 -2.5 -6.2 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_0286 -2.5 -1.5 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_2985 -2.5 -6.7 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_2695 -2.4 -3.1 pseudouridine synthase, RluA family compare
EX28DRAFT_4191 -2.4 -2.3 small GTP-binding protein domain compare
EX28DRAFT_2540 -2.4 -4.1 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_2701 -2.4 -8.4 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_1493 -2.4 -6.5 Transcriptional regulator/sugar kinase compare
EX28DRAFT_2531 -2.4 -3.1 endopeptidase La compare
EX28DRAFT_0755 -2.4 -6.4 ribonuclease D compare
EX28DRAFT_2916 -2.4 -7.3 diaminopimelate decarboxylase compare
EX28DRAFT_4461 -2.4 -5.1 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_2452 -2.4 -8.2 transcriptional regulator, LacI family compare
EX28DRAFT_0764 -2.3 -4.2 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_2050 -2.3 -11.8 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_4507 -2.3 -3.0 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_4405 -2.3 -0.9 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_3669 -2.3 -8.7 3-isopropylmalate dehydrogenase compare
EX28DRAFT_3667 -2.2 -4.3 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_3073 -2.2 -5.1 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_3813 -2.2 -8.4 Transcriptional regulators compare
EX28DRAFT_2268 -2.2 -7.5 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_2288 -2.2 -1.4 negative regulator of replication initiation SeqA compare
EX28DRAFT_0406 -2.2 -7.4 Transcriptional regulators compare
EX28DRAFT_2240 -2.2 -2.4 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_3058 -2.2 -2.9 Signal transduction histidine kinase compare
EX28DRAFT_3616 -2.1 -4.0 threonine synthase compare
EX28DRAFT_0166 -2.1 -8.9 polyphosphate kinase 1 compare
EX28DRAFT_3297 -2.1 -5.2 ribonuclease, Rne/Rng family compare
EX28DRAFT_3336 -2.1 -10.0 aspartate ammonia-lyase compare
EX28DRAFT_0092 -2.1 -2.1 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_4475 -2.1 -4.6 Adenylate cyclase compare
EX28DRAFT_0936 -2.1 -5.4 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_0526 -2.1 -2.4 hypothetical protein compare
EX28DRAFT_0534 -2.1 -4.5 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_3144 -2.1 -5.9 Uncharacterized conserved protein compare
EX28DRAFT_0726 -2.0 -2.2 C-terminal peptidase (prc) compare
EX28DRAFT_0778 -2.0 -1.1 hypothetical protein compare
EX28DRAFT_3449 -2.0 -2.0 Predicted membrane protein compare
EX28DRAFT_2974 -2.0 -6.1 transketolase, bacterial and yeast compare
EX28DRAFT_4338 -2.0 -8.4 molybdenum cofactor guanylyltransferase, proteobacterial compare
EX28DRAFT_3668 -2.0 -8.7 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_3670 -2.0 -11.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_2045 -2.0 -0.7 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_2269 -2.0 -4.9 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_0001 -2.0 -1.7 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_3647 -1.9 -4.4 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_2541 -1.9 -0.9 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_0081 -1.9 -3.9 DNA replication and repair protein RecO compare
EX28DRAFT_2205 -1.9 -1.9 Molybdopterin converting factor, large subunit compare
EX28DRAFT_2046 -1.9 -1.7 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_2539 -1.9 -3.8 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_1250 -1.9 -1.1 Protein of unknown function (DUF421) compare
EX28DRAFT_2043 -1.9 -11.1 transcriptional regulator, AsnC family compare
EX28DRAFT_3883 -1.9 -3.5 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2651 -1.9 -4.8 glutamate 5-kinase compare
EX28DRAFT_3440 -1.9 -2.1 trehalose operon repressor, proteobacterial compare
EX28DRAFT_3046 -1.9 -6.0 cystathionine beta-lyase, bacterial compare
EX28DRAFT_2287 -1.9 -7.0 phosphoglucomutase, alpha-D-glucose phosphate-specific compare
EX28DRAFT_4422 -1.9 -8.3 argininosuccinate lyase compare
EX28DRAFT_3185 -1.9 -2.8 transcriptional regulator, DeoR family compare
EX28DRAFT_0972 -1.9 -1.5 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_3434 -1.9 -2.6 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_4155 -1.8 -3.8 DNA adenine methylase (dam) compare
EX28DRAFT_4327 -1.8 -3.8 transcriptional regulator, IclR family compare
EX28DRAFT_0932 -1.8 -3.2 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_4348 -1.8 -2.0 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_4331 -1.8 -7.8 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_1451 -1.8 -5.4 Transcriptional regulators compare
EX28DRAFT_4411 -1.8 -11.1 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_4463 -1.8 -5.1 Teichoic acid biosynthesis proteins compare
EX28DRAFT_0991 -1.8 -3.8 transcriptional regulator, LacI family compare
EX28DRAFT_2650 -1.8 -5.1 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_2846 -1.8 -3.7 adenylyl-sulfate kinase compare
EX28DRAFT_3621 -1.7 -4.2 molybdenum cofactor synthesis domain compare
EX28DRAFT_2963 -1.7 -2.6 RNA compare
EX28DRAFT_1845 -1.7 -1.1 RNA compare
EX28DRAFT_3372 -1.7 -3.2 HflC protein compare
EX28DRAFT_3315 -1.7 -0.7 Protein of unknown function (DUF2556) compare
EX28DRAFT_3252 -1.7 -2.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
EX28DRAFT_0529 -1.7 -3.6 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_0934 -1.7 -7.1 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_3923 -1.7 -4.9 Predicted transcriptional regulators compare
EX28DRAFT_2948 -1.6 -5.2 Uncharacterized conserved protein compare
EX28DRAFT_0129 -1.6 -0.9 RNA compare
EX28DRAFT_3671 -1.6 -3.8 RNA compare
EX28DRAFT_4443 -1.6 -8.9 dihydroxy-acid dehydratase compare
EX28DRAFT_0292 -1.6 -2.2 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_3224 -1.6 -6.8 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_4446 -1.6 -7.0 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_0933 -1.6 -7.6 tryptophan synthase, beta subunit compare
EX28DRAFT_0214 -1.6 -3.9 cysteine synthase A compare
EX28DRAFT_0622 -1.6 -3.3 Flagellar capping protein compare
EX28DRAFT_2148 -1.6 -5.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4456 -1.6 -4.8 UDP-N-acetylglucosamine 2-epimerase compare
EX28DRAFT_3901 -1.6 -6.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_1031 -1.6 -1.1 Protein of unknown function (DUF2566) compare
EX28DRAFT_3212 -1.5 -3.0 Lipoprotein NlpI, contains TPR repeats compare
EX28DRAFT_0730 -1.5 -1.3 YobH-like protein compare
EX28DRAFT_3438 -1.5 -5.9 alpha,alpha-phosphotrehalase compare
EX28DRAFT_0069 -1.5 -1.2 Superfamily II DNA and RNA helicases compare
EX28DRAFT_0537 -1.5 -6.9 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_2472 -1.5 -0.5 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_4407 -1.5 -5.1 Transcriptional regulators compare
EX28DRAFT_2400 -1.5 -0.7 Cold shock proteins compare
EX28DRAFT_3425 -1.5 -4.1 conserved hypothetical protein EF_0830/AHA_3911 compare
EX28DRAFT_4061 -1.5 -3.8 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_4152 -1.5 -0.8 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_3278 -1.5 -2.6 Glutathione S-transferase compare
EX28DRAFT_4273 -1.5 -2.7 carbohydrate kinase, thermoresistant glucokinase family compare
EX28DRAFT_2917 -1.5 -4.4 Transcriptional regulator compare
EX28DRAFT_0536 -1.5 -2.2 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_4324 -1.5 -2.1 probable addiction module antidote protein compare
EX28DRAFT_3162 -1.5 -3.5 Transcriptional regulators compare
EX28DRAFT_2225 -1.5 -5.1 3-carboxymuconate cyclase compare
EX28DRAFT_0538 -1.5 -6.5 histidinol-phosphate aminotransferase compare
EX28DRAFT_2162 -1.5 -1.6 hypothetical protein compare
EX28DRAFT_4184 -1.4 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1308 -1.4 -1.2 hypothetical protein compare
EX28DRAFT_2271 -1.4 -3.0 hypothetical protein compare
EX28DRAFT_0395 -1.4 -3.1 1-phosphofructokinase compare
EX28DRAFT_0621 -1.4 -2.7 flagellar biosynthetic protein FliS compare
EX28DRAFT_0535 -1.4 -4.5 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_2893 -1.4 -5.2 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_4123 -1.4 -2.3 transcriptional regulator, DeoR family compare
EX28DRAFT_2067 -1.4 -1.1 Transglycosylase SLT domain compare
EX28DRAFT_1626 -1.4 -1.2 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_3275 -1.4 -8.9 Glutamate synthase domain 2 compare


Specific Phenotypes

For 7 genes in this experiment

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days in Enterobacter asburiae PDN3

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days across organisms