Experiment set1IT017 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Group: in planta
Media: MS_media + Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Culturing: EnterPDN3_ML4
By: Doty lab on 5/1/20
Media components: 1650 mg/L Ammonium Nitrate, 6.2 mg/L Boric Acid, 332.2 mg/L Calcium chloride, 0.025 mg/L Cobalt chloride hexahydrate, 0.025 mg/L Copper (II) sulfate pentahydrate, 37.26 mg/L EDTA (disodium salt), 27.8 mg/L Iron (II) sulfate heptahydrate, 2 mg/L Glycine, 180.7 mg/L Magnesium sulfate, 16.9 mg/L Manganese sulfate, 100 mg/L m-Inositol, 0.5 mg/L Nicotinic Acid, 0.83 mg/L Potassium iodide, 1900 mg/L Potassium nitrate, 170 mg/L Potassium phosphate monobasic, 0.5 mg/L Pyridoxine HCl, 0.25 mg/L Sodium Molybdate Dihydrate, 0.1 mg/L Thiamine HCl, 8.6 mg/L Zinc sulfate heptahydrate, 20 g/L Sucrose

Specific Phenotypes

For 7 genes in this experiment

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days in Enterobacter asburiae PDN3

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days across organisms

SEED Subsystems

Subsystem #Specific
Molybdenum cofactor biosynthesis 2
Autoinducer 2 (AI-2) transport and processing (lsrACDBFGE operon) 1
CytR regulation 1
Lactose and Galactose Uptake and Utilization 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
bis(guanylyl molybdenum cofactor) biosynthesis 2 2 2
bis(guanylyl tungstenpterin) cofactor biosynthesis 1 1 1
guanylyl molybdenum cofactor biosynthesis 1 1 1
autoinducer AI-2 degradation 3 3 1
molybdopterin biosynthesis 6 6 1