Experiment set1IT016 for Variovorax sp. OAS795

Compare to:

Sodium L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS16595 -8.3 -5.7 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS15375 -8.2 -5.7 DUF934 domain-containing protein compare
ABID97_RS15380 -7.0 -9.6 nitrite/sulfite reductase compare
ABID97_RS10815 -6.7 -15.5 phosphoenolpyruvate synthase compare
ABID97_RS08015 -6.5 -4.0 LysR substrate-binding domain-containing protein compare
ABID97_RS20615 -6.5 -5.7 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS06575 -6.4 -6.2 trehalose-phosphatase compare
ABID97_RS08010 -6.2 -7.4 alpha-hydroxy acid oxidase conserved
ABID97_RS23225 -6.0 -15.5 glutamate synthase-related protein compare
ABID97_RS08220 -5.9 -7.1 phosphoenolpyruvate carboxylase compare
ABID97_RS16600 -5.8 -8.0 CysB family HTH-type transcriptional regulator compare
ABID97_RS01565 -5.1 -12.7 DNA starvation/stationary phase protection protein compare
ABID97_RS23230 -5.0 -15.0 transposase compare
ABID97_RS02290 -4.9 -16.7 sensor histidine kinase N-terminal domain-containing protein compare
ABID97_RS25080 -4.8 -19.0 MFS transporter compare
ABID97_RS08425 -4.8 -3.3 tryptophan synthase subunit alpha compare
ABID97_RS05260 -4.8 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS02285 -4.7 -18.2 response regulator transcription factor compare
ABID97_RS07405 -4.7 -13.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS14105 -4.7 -3.2 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS05250 -4.7 -4.6 anthranilate synthase component I compare
ABID97_RS10885 -4.7 -5.5 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS14095 -4.6 -11.4 PAS domain S-box protein compare
ABID97_RS14100 -4.2 -8.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS23915 -4.2 -2.9 heme o synthase compare
ABID97_RS07430 -4.2 -10.9 pantoate--beta-alanine ligase compare
ABID97_RS23425 -4.2 -2.9 tRNA-Pro compare
ABID97_RS15665 -4.1 -11.8 [protein-PII] uridylyltransferase compare
ABID97_RS25015 -4.1 -2.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS07000 -4.0 -10.0 threonine ammonia-lyase, biosynthetic compare
ABID97_RS15370 -3.9 -12.6 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS09180 -3.9 -4.6 DNA polymerase I compare
ABID97_RS13860 -3.9 -8.2 hypothetical protein compare
ABID97_RS06345 -3.9 -2.7 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS07435 -3.7 -8.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS13990 -3.7 -3.6 amino acid aminotransferase compare
ABID97_RS14115 -3.7 -6.6 dihydrolipoyl dehydrogenase compare
ABID97_RS03680 -3.6 -9.2 lysophospholipid transporter LplT compare
ABID97_RS12180 -3.6 -2.4 hypothetical protein compare
ABID97_RS02600 -3.5 -4.2 homoserine O-acetyltransferase compare
ABID97_RS16535 -3.5 -9.2 arginine/lysine/ornithine decarboxylase compare
ABID97_RS23220 -3.5 -1.8 glutamate synthase subunit beta compare
ABID97_RS15360 -3.4 -5.4 GTP-binding protein compare
ABID97_RS05275 -3.4 -2.3 anthranilate phosphoribosyltransferase compare
ABID97_RS07775 -3.3 -4.8 phosphoribosylglycinamide formyltransferase compare
ABID97_RS09620 -3.3 -4.1 hypothetical protein compare
ABID97_RS15465 -3.2 -12.2 sulfate ABC transporter substrate-binding protein compare
ABID97_RS14090 -3.2 -1.9 response regulator transcription factor compare
ABID97_RS07410 -3.1 -6.7 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS23455 -3.1 -3.6 hypothetical protein compare
ABID97_RS11960 -2.9 -1.6 hypothetical protein compare
ABID97_RS04890 -2.9 -9.9 cation:proton antiporter compare
ABID97_RS15365 -2.8 -4.9 sulfate adenylyltransferase subunit CysD compare
ABID97_RS05280 -2.8 -1.9 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS24170 -2.8 -6.6 ATP-binding protein compare
ABID97_RS03910 -2.7 -1.9 orotate phosphoribosyltransferase compare
ABID97_RS05755 -2.7 -2.6 glycosyltransferase compare
ABID97_RS08435 -2.7 -1.8 phosphoribosylanthranilate isomerase compare
ABID97_RS05765 -2.7 -1.8 UDP-glucose 4-epimerase GalE compare
ABID97_RS21150 -2.7 -10.6 FAD-dependent oxidoreductase compare
ABID97_RS05365 -2.6 -4.3 DUF4390 domain-containing protein compare
ABID97_RS04505 -2.6 -3.0 ferric iron uptake transcriptional regulator compare
ABID97_RS24045 -2.6 -2.8 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS25525 -2.6 -5.4 LacI family DNA-binding transcriptional regulator compare
ABID97_RS23450 -2.6 -4.9 MBOAT family protein compare
ABID97_RS07415 -2.5 -13.3 quinolinate synthase NadA compare
ABID97_RS04500 -2.5 -1.7 HPr(Ser) kinase/phosphatase compare
ABID97_RS06460 -2.5 -1.7 sigma 54-interacting transcriptional regulator compare
ABID97_RS28990 -2.5 -3.9 aspartate 1-decarboxylase compare
ABID97_RS10295 -2.5 -1.7 winged helix-turn-helix transcriptional regulator compare
ABID97_RS05370 -2.5 -5.7 ATP-binding protein compare
ABID97_RS15490 -2.4 -8.1 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS17850 -2.4 -1.3 tetratricopeptide repeat protein compare
ABID97_RS24920 -2.4 -1.8 Holliday junction branch migration protein RuvA compare
ABID97_RS05750 -2.3 -2.7 glycosyltransferase compare
ABID97_RS12460 -2.3 -2.5 acetoacetyl-CoA reductase compare
ABID97_RS14160 -2.2 -7.2 cell division protein ZapE compare
ABID97_RS00255 -2.2 -14.0 type IV pilus twitching motility protein PilT compare
ABID97_RS04885 -2.2 -13.3 YbdK family carboxylate-amine ligase compare
ABID97_RS06450 -2.2 -2.6 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS16750 -2.2 -12.0 Rid family hydrolase compare
ABID97_RS17635 -2.2 -3.8 presqualene diphosphate synthase HpnD compare
ABID97_RS12140 -2.2 -8.2 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS03800 -2.2 -2.9 O-antigen ligase family protein compare
ABID97_RS17590 -2.2 -11.0 endopeptidase La compare
ABID97_RS02110 -2.2 -12.5 type IV pilus modification protein PilV compare
ABID97_RS02115 -2.1 -8.5 PilW family protein compare
ABID97_RS02135 -2.1 -5.8 GspH/FimT family pseudopilin compare
ABID97_RS08775 -2.1 -2.4 ribosome small subunit-dependent GTPase A compare
ABID97_RS25085 -2.1 -3.3 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS08710 -2.1 -7.2 polynucleotide adenylyltransferase PcnB compare
ABID97_RS13865 -2.0 -5.9 hypothetical protein compare
ABID97_RS02455 -2.0 -4.2 nucleotidyltransferase family protein compare
ABID97_RS04480 -2.0 -2.6 magnesium/cobalt transporter CorA compare
ABID97_RS08480 -2.0 -1.4 citrate synthase compare
ABID97_RS02125 -2.0 -16.3 PilC/PilY family type IV pilus protein compare
ABID97_RS05670 -2.0 -1.4 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS14920 -2.0 -11.1 IclR family transcriptional regulator compare
ABID97_RS28335 -2.0 -1.6 FAD-dependent oxidoreductase compare
ABID97_RS03125 -2.0 -7.7 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS03805 -2.0 -1.3 ATP-binding protein compare
ABID97_RS08430 -1.9 -1.3 tryptophan synthase subunit beta compare
ABID97_RS03110 -1.9 -4.6 helix-turn-helix transcriptional regulator compare
ABID97_RS03720 -1.9 -1.5 4-hydroxy-2-oxoheptanedioate aldolase compare
ABID97_RS23440 -1.9 -7.7 A24 family peptidase compare
ABID97_RS18205 -1.9 -3.4 XRE family transcriptional regulator compare
ABID97_RS08445 -1.9 -7.7 FimV/HubP family polar landmark protein compare
ABID97_RS20520 -1.9 -2.3 polyribonucleotide nucleotidyltransferase compare
ABID97_RS07440 -1.9 -10.2 L-aspartate oxidase compare
ABID97_RS01840 -1.8 -11.3 DUF1631 family protein compare
ABID97_RS09940 -1.8 -7.2 nitrogen regulation protein NR(II) compare
ABID97_RS15470 -1.8 -2.9 NADPH-dependent FMN reductase compare
ABID97_RS02120 -1.8 -11.0 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS01650 -1.8 -1.2 orotidine-5'-phosphate decarboxylase compare
ABID97_RS02130 -1.8 -10.5 type IV pilin protein compare
ABID97_RS15505 -1.8 -1.2 ATP-binding cassette domain-containing protein compare
ABID97_RS20610 -1.8 -6.0 DNA-binding protein YbiB compare
ABID97_RS03630 -1.8 -3.7 P-II family nitrogen regulator compare
ABID97_RS09630 -1.8 -2.4 hypothetical protein compare
ABID97_RS02145 -1.8 -7.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS23435 -1.7 -12.9 type II secretion system F family protein compare
ABID97_RS20020 -1.7 -3.2 LacI family DNA-binding transcriptional regulator compare
ABID97_RS24370 -1.7 -3.6 DUF1841 family protein compare
ABID97_RS06175 -1.7 -13.8 STAS domain-containing protein compare
ABID97_RS06520 -1.7 -1.6 SAM-dependent methyltransferase compare
ABID97_RS23430 -1.7 -7.8 type IV-A pilus assembly ATPase PilB compare
ABID97_RS24705 -1.7 -4.5 response regulator compare
ABID97_RS04765 -1.7 -1.9 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS13760 -1.6 -2.2 hypothetical protein compare
ABID97_RS19065 -1.6 -4.8 GntR family transcriptional regulator compare
ABID97_RS19955 -1.6 -1.5 glycerol-3-phosphate dehydrogenase compare
ABID97_RS22705 -1.6 -9.5 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS03915 -1.6 -7.5 DUF4124 domain-containing protein compare
ABID97_RS01825 -1.6 -10.4 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS16785 -1.6 -2.4 transporter compare
ABID97_RS14625 -1.6 -4.6 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS27820 -1.6 -2.5 ABC transporter substrate-binding protein compare
ABID97_RS07500 -1.6 -2.1 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS02140 -1.6 -9.4 sugar transferase compare
ABID97_RS15480 -1.6 -5.5 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS10705 -1.6 -5.6 H-NS histone family protein compare
ABID97_RS09935 -1.6 -8.1 hypothetical protein compare
ABID97_RS06160 -1.5 -6.4 GTP-binding protein compare
ABID97_RS19550 -1.5 -1.5 phosphatase PAP2 family protein compare
ABID97_RS23270 -1.5 -7.0 pilus assembly protein PilP compare
ABID97_RS15495 -1.4 -3.5 aliphatic sulfonate ABC transporter permease SsuC compare
ABID97_RS09595 -1.4 -1.3 Arc family DNA-binding protein compare
ABID97_RS26295 -1.4 -1.8 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS23650 -1.4 -10.1 serine/threonine-protein kinase compare
ABID97_RS06415 -1.4 -9.3 sigma-54 dependent transcriptional regulator compare
ABID97_RS03115 -1.4 -6.7 2,3-epoxybenzoyl-CoA dihydrolase compare
ABID97_RS08360 -1.4 -4.5 DUF4845 domain-containing protein compare
ABID97_RS20905 -1.4 -2.0 hypothetical protein compare
ABID97_RS21165 -1.4 -3.2 energy-dependent translational throttle protein EttA compare
ABID97_RS02210 -1.3 -7.3 pilin compare
ABID97_RS23380 -1.3 -8.8 lytic transglycosylase domain-containing protein compare
ABID97_RS23265 -1.3 -6.3 type IV pilus secretin PilQ compare
ABID97_RS08195 -1.3 -4.0 histidine kinase compare
ABID97_RS16065 -1.3 -1.0 PDR/VanB family oxidoreductase compare
ABID97_RS15130 -1.3 -1.4 contractile injection system protein, VgrG/Pvc8 family compare
ABID97_RS02605 -1.3 -8.7 TMEM165/GDT1 family protein compare
ABID97_RS04610 -1.3 -6.1 potassium transporter Kup compare
ABID97_RS17225 -1.3 -7.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABID97_RS16695 -1.3 -8.9 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS06600 -1.3 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS02460 -1.3 -9.2 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS08440 -1.3 -4.5 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS09570 -1.3 -2.7 hypothetical protein compare
ABID97_RS02420 -1.3 -5.8 protealysin inhibitor emfourin compare
ABID97_RS17970 -1.3 -5.3 protein TolQ compare
ABID97_RS19375 -1.3 -4.3 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS06315 -1.3 -8.8 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS25090 -1.3 -1.7 DUF1289 domain-containing protein compare
ABID97_RS20425 -1.3 -3.0 DUF2818 family protein compare
ABID97_RS23940 -1.3 -4.6 cytochrome c oxidase subunit 3 compare
ABID97_RS12415 -1.2 -8.3 class I poly(R)-hydroxyalkanoic acid synthase compare
ABID97_RS02200 -1.2 -10.0 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS15585 -1.2 -3.4 sulfate ABC transporter ATP-binding protein compare
ABID97_RS23275 -1.2 -6.4 type 4a pilus biogenesis protein PilO compare
ABID97_RS18255 -1.2 -1.6 hypothetical protein compare
ABID97_RS28635 -1.2 -3.4 IclR family transcriptional regulator compare
ABID97_RS16745 -1.2 -5.4 class I SAM-dependent methyltransferase compare
ABID97_RS24690 -1.2 -5.8 methyl-accepting chemotaxis protein compare
ABID97_RS17265 -1.2 -2.8 two-component system response regulator OmpR compare
ABID97_RS23285 -1.2 -7.1 pilus assembly protein PilM compare
ABID97_RS17200 -1.2 -9.3 ribonuclease R compare
ABID97_RS20095 -1.1 -1.6 DNA topoisomerase IV subunit B compare
ABID97_RS26990 -1.1 -1.3 ornithine carbamoyltransferase compare
ABID97_RS15100 -1.1 -1.5 helix-turn-helix transcriptional regulator compare
ABID97_RS14505 -1.1 -8.6 hypothetical protein compare
ABID97_RS15580 -1.1 -4.0 sulfate ABC transporter permease subunit CysW compare
ABID97_RS14665 -1.1 -2.3 UvrD-helicase domain-containing protein compare
ABID97_RS15995 -1.1 -3.8 PilZ domain-containing protein compare
ABID97_RS14975 -1.1 -3.6 hypothetical protein compare
ABID97_RS06190 -1.1 -4.1 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS14850 -1.1 -3.2 P-II family nitrogen regulator compare
ABID97_RS23645 -1.1 -1.8 PP2C family serine/threonine-protein phosphatase compare
ABID97_RS25405 -1.1 -6.4 16S ribosomal RNA compare
ABID97_RS27450 -1.1 -1.0 biotin-independent malonate decarboxylase subunit gamma compare
ABID97_RS24595 -1.1 -3.2 tripartite tricarboxylate transporter substrate binding protein compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source Sodium L-Lactate in Variovorax sp. OAS795

For carbon source Sodium L-Lactate across organisms