Experiment set1IT016 for Pseudomonas fluorescens SBW25

Compare to:

Trisodium citrate dihydrate carbon source

200 most important genes:

  gene name fitness t score description  
PFLU_RS01645 -6.7 -12.1 S41 family peptidase compare
PFLU_RS28695 -5.7 -6.8 phosphoglycerate dehydrogenase compare
PFLU_RS27365 -5.6 -8.5 indole-3-glycerol phosphate synthase TrpC compare
PFLU_RS03645 -5.5 -14.2 tetratricopeptide repeat protein compare
PFLU_RS01620 -5.3 -10.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
PFLU_RS01895 -5.3 -3.6 phosphoribosyl-ATP diphosphatase compare
PFLU_RS01625 -5.2 -3.6 imidazole glycerol phosphate synthase subunit HisF compare
PFLU_RS01605 -4.7 -7.9 imidazoleglycerol-phosphate dehydratase HisB compare
PFLU_RS22105 -4.7 -4.5 cysteine synthase CysM compare
PFLU_RS27370 -4.6 -15.1 anthranilate phosphoribosyltransferase compare
PFLU_RS24125 -4.6 -8.3 cold-shock protein compare
PFLU_RS04465 -4.6 -12.5 ATP phosphoribosyltransferase compare
PFLU_RS12975 -4.5 -6.9 DUF934 domain-containing protein compare
PFLU_RS02490 -4.5 -13.7 phosphoserine phosphatase SerB compare
PFLU_RS20540 -4.5 -12.8 phosphoribosylanthranilate isomerase compare
PFLU_RS25640 -4.4 -13.4 ketol-acid reductoisomerase compare
PFLU_RS28655 -4.4 -16.7 HAD family hydrolase compare
PFLU_RS01900 -4.4 -9.4 phosphoribosyl-AMP cyclohydrolase compare
PFLU_RS04470 -4.3 -14.1 histidinol dehydrogenase compare
PFLU_RS22740 -4.3 -5.1 phosphoadenylyl-sulfate reductase compare
PFLU_RS28535 -4.3 -16.6 dihydroxy-acid dehydratase compare
PFLU_RS07650 -4.3 -16.5 fatty acid oxidation complex subunit alpha FadB compare
PFLU_RS02590 -4.2 -8.5 ATP phosphoribosyltransferase regulatory subunit compare
PFLU_RS25755 -4.1 -2.8 pantoate--beta-alanine ligase compare
PFLU_RS03770 -4.0 -14.2 sulfate adenylyltransferase subunit CysN compare
PFLU_RS00180 -4.0 -11.8 tryptophan synthase subunit beta compare
PFLU_RS25735 -4.0 -9.0 sigma-54-dependent Fis family transcriptional regulator compare
PFLU_RS22070 -4.0 -6.0 phosphoribosylglycinamide formyltransferase compare
PFLU_RS18505 -4.0 -11.8 uroporphyrinogen-III C-methyltransferase compare
PFLU_RS20575 -3.9 -6.4 3-isopropylmalate dehydratase small subunit compare
PFLU_RS22095 -3.8 -23.7 GTP diphosphokinase compare
PFLU_RS01485 -3.7 -14.3 cellulase compare
PFLU_RS28165 -3.7 -11.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
PFLU_RS20580 -3.7 -14.3 3-isopropylmalate dehydratase large subunit compare
PFLU_RS09055 -3.6 -4.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
PFLU_RS28965 -3.5 -13.9 5-formyltetrahydrofolate cyclo-ligase compare
PFLU_RS03970 -3.5 -12.7 carboxylating nicotinate-nucleotide diphosphorylase compare
PFLU_RS26545 -3.5 -7.4 sel1 repeat family protein compare
PFLU_RS20510 -3.5 -19.1 O-succinylhomoserine sulfhydrylase compare
PFLU_RS29560 -3.4 -1.4 hypothetical protein compare
PFLU_RS07165 -3.4 -18.5 sensor histidine kinase compare
PFLU_RS21495 -3.4 -4.0 TlpA family protein disulfide reductase compare
PFLU_RS03765 -3.4 -13.8 sulfate adenylyltransferase subunit CysD compare
PFLU_RS27620 -3.3 -17.3 acyl-CoA dehydrogenase compare
PFLU_RS29095 -3.3 -24.1 polyphosphate kinase 1 compare
PFLU_RS28645 -3.2 -13.6 phosphoenolpyruvate--protein phosphotransferase compare
PFLU_RS20565 -3.2 -17.3 3-isopropylmalate dehydrogenase compare
PFLU_RS01610 -3.2 -12.5 imidazole glycerol phosphate synthase subunit HisH compare
PFLU_RS28390 -3.2 -10.0 methionine biosynthesis protein MetW compare
PFLU_RS29515 -3.1 -13.0 RidA family protein compare
PFLU_RS12980 -3.1 -10.0 nitrite/sulfite reductase compare
PFLU_RS23065 -3.1 -11.1 phosphate acyltransferase PlsX compare
PFLU_RS23680 -3.1 -17.5 long-chain fatty acid--CoA ligase compare
PFLU_RS00175 -3.1 -7.1 tryptophan synthase subunit alpha compare
PFLU_RS23310 -3.0 -12.4 arginine/ornithine succinyltransferase subunit alpha compare
PFLU_RS24025 -3.0 -13.3 quinolinate synthase NadA compare
PFLU_RS05210 -3.0 -1.7 HU family DNA-binding protein compare
PFLU_RS25360 -3.0 -6.9 glutamate 5-kinase compare
PFLU_RS31100 -2.9 -5.5 preprotein translocase subunit SecG compare
PFLU_RS24765 -2.9 -17.9 2-isopropylmalate synthase compare
PFLU_RS26640 -2.9 -14.4 septal ring lytic transglycosylase RlpA family protein compare
PFLU_RS18635 -2.8 -4.9 NADH-quinone oxidoreductase subunit NuoF compare
PFLU_RS23920 -2.8 -4.2 septation protein A compare
PFLU_RS07160 -2.7 -15.2 response regulator compare
PFLU_RS24485 -2.7 -9.6 hypothetical protein compare
PFLU_RS14550 -2.7 -12.0 UTP--glucose-1-phosphate uridylyltransferase GalU compare
PFLU_RS29725 -2.7 -11.5 phosphate regulon transcriptional regulatory protein PhoB compare
PFLU_RS28385 -2.7 -11.6 homoserine O-acetyltransferase compare
PFLU_RS14810 -2.7 -3.9 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
PFLU_RS26595 -2.7 -1.8 lipoprotein compare
PFLU_RS29730 -2.7 -10.6 phosphate regulon sensor histidine kinase PhoR compare
PFLU_RS20625 -2.6 -3.7 TetR/AcrR family transcriptional regulator compare
PFLU_RS01320 -2.6 -9.9 phosphoenolpyruvate carboxykinase compare
PFLU_RS08505 -2.5 -6.8 protease HtpX compare
PFLU_RS07655 -2.5 -5.1 acetyl-CoA C-acyltransferase FadA compare
PFLU_RS21300 -2.5 -6.4 cysteine hydrolase compare
PFLU_RS07785 -2.5 -13.6 VacJ family lipoprotein compare
PFLU_RS00415 -2.5 -4.6 thiol:disulfide interchange protein DsbA/DsbL compare
PFLU_RS08410 -2.4 -10.3 HTH-type transcriptional regulator CysB compare
PFLU_RS26770 -2.4 -11.2 DedA family protein compare
PFLU_RS23305 -2.4 -10.5 arginine N-succinyltransferase compare
PFLU_RS24790 -2.4 -4.7 tetratricopeptide repeat protein compare
PFLU_RS09980 -2.4 -14.4 peptidase S41 compare
PFLU_RS13540 -2.3 -1.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PFLU_RS00510 -2.3 -14.6 CitMHS family transporter compare
PFLU_RS18675 -2.3 -3.7 NADH-quinone oxidoreductase subunit NuoN compare
PFLU_RS22595 -2.3 -4.1 OmpA family protein compare
PFLU_RS25730 -2.3 -13.9 PAS domain S-box protein compare
PFLU_RS07150 -2.3 -11.3 tripartite tricarboxylate transporter substrate binding protein compare
PFLU_RS21060 -2.3 -5.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS18640 -2.3 -6.5 NADH-quinone oxidoreductase subunit NuoG compare
PFLU_RS04070 -2.2 -5.5 peptide chain release factor 3 compare
PFLU_RS08160 -2.2 -8.8 sugar transferase compare
PFLU_RS31560 -2.2 -2.0 hypothetical protein compare
PFLU_RS26905 -2.2 -7.3 transcriptional regulator NrdR compare
PFLU_RS20515 -2.2 -2.1 amidophosphoribosyltransferase compare
PFLU_RS18670 -2.2 -3.8 NADH-quinone oxidoreductase subunit M compare
PFLU_RS24820 -2.2 -1.5 nucleoside-diphosphate kinase compare
PFLU_RS02365 -2.1 -10.7 glycosyltransferase compare
PFLU_RS08130 -2.1 -2.0 flippase compare
PFLU_RS04430 -2.1 -8.8 ATP-binding cassette domain-containing protein compare
PFLU_RS01965 -2.1 -2.4 ATP-dependent protease subunit HslV compare
PFLU_RS18530 -2.1 -5.3 DNA translocase FtsK compare
PFLU_RS07275 -2.0 -6.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PFLU_RS06440 -2.0 -1.4 dCTP deaminase compare
PFLU_RS18620 -2.0 -6.7 NADH-quinone oxidoreductase subunit B compare
PFLU_RS05565 -2.0 -2.2 transporter compare
PFLU_RS18655 -2.0 -3.1 NADH-quinone oxidoreductase subunit J compare
PFLU_RS25750 -2.0 -5.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PFLU_RS18665 -1.9 -4.3 NADH-quinone oxidoreductase subunit L compare
PFLU_RS19165 -1.9 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PFLU_RS06320 -1.9 -3.4 OmpH family outer membrane protein compare
PFLU_RS05885 -1.9 -4.6 recombinase RecA compare
PFLU_RS29270 -1.9 -3.5 diaminopimelate epimerase compare
PFLU_RS28650 -1.9 -7.6 RNA pyrophosphohydrolase compare
PFLU_RS02460 -1.8 -7.9 alpha/beta fold hydrolase compare
PFLU_RS24090 -1.8 -4.5 Holliday junction branch migration protein RuvA compare
PFLU_RS04715 -1.8 -7.2 D-alanine--D-alanine ligase compare
PFLU_RS23720 -1.8 -1.7 6-phosphogluconolactonase compare
PFLU_RS20690 -1.8 -3.2 hypothetical protein compare
PFLU_RS25740 -1.8 -5.4 polynucleotide adenylyltransferase PcnB compare
PFLU_RS31475 -1.8 -3.1 hypothetical protein compare
PFLU_RS12210 -1.8 -2.0 hypothetical protein compare
PFLU_RS08165 -1.8 -3.0 acyl carrier protein compare
PFLU_RS18630 -1.8 -2.7 NADH-quinone oxidoreductase subunit NuoE compare
PFLU_RS22600 -1.7 -2.6 RNA polymerase sigma factor SigX compare
PFLU_RS29480 -1.7 -2.8 exodeoxyribonuclease III compare
PFLU_RS23200 -1.7 -1.2 flagellar biosynthesis anti-sigma factor FlgM compare
PFLU_RS04445 -1.7 -6.4 ABC transporter substrate-binding protein compare
PFLU_RS18625 -1.7 -5.8 NADH-quinone oxidoreductase subunit C/D compare
PFLU_RS18615 -1.7 -2.4 NADH-quinone oxidoreductase subunit A compare
PFLU_RS18350 -1.7 -1.4 GIY-YIG nuclease family protein compare
PFLU_RS04385 -1.7 -6.2 RNase adapter RapZ compare
PFLU_RS03015 -1.7 -1.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH compare
PFLU_RS04440 -1.7 -8.3 outer membrane lipid asymmetry maintenance protein MlaD compare
PFLU_RS08665 -1.6 -1.1 cytochrome c maturation protein CcmE compare
PFLU_RS18650 -1.6 -2.6 NADH-quinone oxidoreductase subunit NuoI compare
PFLU_RS29265 -1.6 -1.1 diaminopimelate decarboxylase compare
PFLU_RS04650 -1.6 -12.0 ABC transporter substrate-binding protein compare
PFLU_RS31400 -1.6 -4.8 hypothetical protein compare
PFLU_RS25585 -1.6 -2.6 exodeoxyribonuclease V subunit alpha compare
PFLU_RS02980 -1.6 -2.3 precorrin-8X methylmutase compare
PFLU_RS30800 -1.6 -3.4 ThiF family adenylyltransferase compare
PFLU_RS24205 -1.6 -2.5 DNA binding protein compare
PFLU_RS27475 -1.6 -7.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
PFLU_RS04325 -1.5 -10.1 ribonuclease G compare
PFLU_RS10355 -1.5 -3.7 DeoR family transcriptional regulator compare
PFLU_RS04435 -1.5 -6.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
PFLU_RS24085 -1.5 -3.7 Holliday junction branch migration DNA helicase RuvB compare
PFLU_RS24095 -1.5 -2.0 crossover junction endodeoxyribonuclease RuvC compare
PFLU_RS28325 -1.5 -7.5 energy transducer TonB compare
PFLU_RS08155 -1.5 -4.5 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
PFLU_RS19170 -1.5 -4.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
PFLU_RS15410 -1.5 -3.3 zinc-dependent alcohol dehydrogenase family protein compare
PFLU_RS28425 -1.5 -1.3 sulfur carrier protein ThiS compare
PFLU_RS21965 -1.5 -10.0 transporter compare
PFLU_RS29490 -1.5 -6.3 ribonuclease PH compare
PFLU_RS01285 -1.5 -1.0 HAMP domain-containing protein compare
PFLU_RS19175 -1.5 -5.9 trigger factor compare
PFLU_RS06555 -1.5 -7.4 OmpA family protein compare
PFLU_RS05540 -1.5 -10.0 LysR family transcriptional regulator compare
PFLU_RS30165 -1.5 -7.8 ParA family protein compare
PFLU_RS08735 -1.5 -1.9 histidine phosphatase family protein compare
PFLU_RS00375 -1.5 -0.8 transcriptional repressor compare
PFLU_RS26735 -1.4 -8.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PFLU_RS08680 -1.4 -0.9 cytochrome c-type biogenesis protein CcmH compare
PFLU_RS02670 -1.4 -2.6 hypothetical protein compare
PFLU_RS01665 -1.4 -1.7 glutaredoxin 3 compare
PFLU_RS24545 -1.4 -1.0 threonine synthase compare
PFLU_RS25645 -1.4 -1.6 acetolactate synthase small subunit compare
PFLU_RS30160 -1.4 -2.0 ParB/RepB/Spo0J family partition protein compare
PFLU_RS10430 -1.4 -2.8 peptidase compare
PFLU_RS06680 -1.4 -2.0 hypothetical protein compare
PFLU_RS05225 -1.4 -2.4 hypothetical protein compare
PFLU_RS13200 -1.4 -1.1 Ldh family oxidoreductase compare
PFLU_RS01500 -1.4 -1.5 cell division protein FtsQ compare
PFLU_RS27640 -1.4 -3.1 alpha/beta fold hydrolase compare
PFLU_RS04505 -1.4 -3.2 hypothetical protein compare
PFLU_RS26020 -1.3 -8.1 TetR/AcrR family transcriptional regulator compare
PFLU_RS14820 -1.3 -4.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
PFLU_RS08675 -1.3 -1.7 DsbE family thiol:disulfide interchange protein compare
PFLU_RS25715 -1.3 -7.0 RNA polymerase-binding protein DksA compare
PFLU_RS23185 -1.3 -7.7 protein-glutamate O-methyltransferase CheR compare
PFLU_RS08670 -1.3 -2.1 heme lyase CcmF/NrfE family subunit compare
PFLU_RS02000 -1.3 -10.8 penicillin-binding protein 1A compare
PFLU_RS05570 -1.3 -1.7 EamA family transporter compare
PFLU_RS13000 -1.3 -8.6 methionine synthase compare
PFLU_RS22190 -1.3 -1.2 hypothetical protein compare
PFLU_RS23670 -1.3 -1.8 CsbD family protein compare
PFLU_RS29745 -1.3 -1.0 response regulator compare
PFLU_RS24550 -1.2 -1.2 homoserine dehydrogenase compare
PFLU_RS25935 -1.2 -1.5 SsrA-binding protein SmpB compare
PFLU_RS21985 -1.2 -4.4 adenosylcobinamide-GDP ribazoletransferase compare
PFLU_RS02455 -1.2 -1.4 3',5'-cyclic-AMP phosphodiesterase compare
PFLU_RS30030 -1.2 -1.1 membrane protein compare
PFLU_RS26565 -1.2 -0.8 rRNA maturation RNase YbeY compare
PFLU_RS07695 -1.2 -3.0 beta-N-acetylhexosaminidase compare
PFLU_RS02370 -1.2 -6.0 glycosyltransferase compare
PFLU_RS18645 -1.2 -3.4 NADH-quinone oxidoreductase subunit NuoH compare
PFLU_RS04475 -1.2 -6.7 histidinol-phosphate transaminase compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens SBW25 in carbon source experiments

For carbon source Trisodium citrate dihydrate across organisms