Experiment set1IT015 for Pseudomonas simiae WCS417

Compare to:

LB with Dimethyl Sulfoxide 4 vol%

200 most important genes:

  gene name fitness t score description  
PS417_06375 -5.4 -2.0 deoxycytidine triphosphate deaminase compare
PS417_24155 -3.1 -5.2 ATP-binding protein compare
PS417_23770 -2.7 -5.1 exodeoxyribonuclease V subunit alpha compare
PS417_23950 -2.4 -5.7 polynucleotide phosphorylase/polyadenylase compare
PS417_08125 -2.0 -1.9 prephenate dehydratase compare
PS417_02210 -1.7 -7.0 diguanylate cyclase compare
PS417_04650 -1.5 -1.0 D-alanine--D-alanine ligase compare
PS417_26805 -1.4 -1.6 cell division protein FtsE compare
PS417_13425 -1.1 -2.5 cupin compare
PS417_09245 -1.1 -2.4 recombinase RdgC compare
PS417_05985 -1.1 -2.8 chemotaxis protein CheY compare
PS417_17305 -1.1 -1.9 hypothetical protein compare
PS417_02555 -1.1 -8.6 exoribonuclease R compare
PS417_27800 -1.0 -6.2 exodeoxyribonuclease III compare
PS417_08135 -1.0 -6.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_02975 -1.0 -3.8 3-dehydroquinate dehydratase compare
PS417_26815 -1.0 -2.1 peptidase M16 compare
PS417_06680 -1.0 -7.0 nuclease PIN compare
PS417_02270 -1.0 -3.8 carbamoyltransferase compare
PS417_27040 -1.0 -1.9 3-phosphoglycerate dehydrogenase compare
PS417_03260 -0.9 -1.6 5S ribosomal RNA compare
PS417_15915 -0.9 -1.6 hypothetical protein compare
PS417_20880 -0.9 -2.4 GntR family transcriptional regulator compare
PS417_03560 -0.9 -2.3 GTP-binding protein compare
PS417_03100 -0.9 -1.5 pilus assembly protein compare
PS417_27795 -0.9 -1.3 orotate phosphoribosyltransferase compare
PS417_27245 -0.9 -2.9 aminotransferase DegT compare
PS417_13165 -0.9 -0.8 peroxidase compare
PS417_08580 -0.8 -5.0 histidine kinase compare
PS417_21625 -0.8 -1.4 DNA-binding protein compare
PS417_08410 -0.8 -1.9 hypothetical protein compare
PS417_18425 -0.8 -1.5 sporulation protein compare
PS417_00045 -0.8 -2.4 glycerol acyltransferase compare
PS417_02560 -0.8 -2.2 23S rRNA methyltransferase compare
PS417_07095 -0.8 -4.3 histidine kinase compare
PS417_09915 -0.8 -1.5 hypothetical protein compare
PS417_00195 -0.8 -1.9 hypothetical protein compare
PS417_13895 -0.8 -2.2 chemotaxis protein CheB compare
PS417_23995 -0.8 -0.9 preprotein translocase subunit SecG compare
PS417_24225 -0.7 -2.2 hypothetical protein compare
PS417_22450 -0.7 -1.6 ATP-dependent DNA helicase RuvA compare
PS417_27425 -0.7 -5.3 exopolyphosphatase compare
PS417_22190 -0.7 -4.1 diguanylate cyclase compare
PS417_04365 -0.7 -0.9 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_26990 -0.7 -1.5 RNA pyrophosphohydrolase compare
PS417_09235 -0.7 -0.9 molecular chaperone compare
PS417_02880 -0.7 -1.7 copper chaperone compare
PS417_05160 -0.7 -1.1 DNA polymerase III subunit chi compare
PS417_18105 -0.7 -1.5 iron-dicitrate transporter substrate-binding subunit compare
PS417_22520 -0.7 -2.4 histidine kinase compare
PS417_27870 -0.7 -1.6 ATP-dependent DNA helicase RecG compare
PS417_26985 -0.7 -4.2 phosphoenolpyruvate-protein phosphotransferase compare
PS417_14600 -0.7 -2.8 bleomycin resistance protein compare
PS417_19415 -0.7 -1.5 allantoinase compare
PS417_23135 -0.7 -1.2 GTP-binding protein compare
PS417_04585 -0.6 -1.2 hypothetical protein compare
PS417_04595 -0.6 -2.4 cell division protein MraZ compare
PS417_08320 -0.6 -1.8 metal-chelation protein CHAD compare
PS417_19600 -0.6 -1.0 exonuclease compare
PS417_06895 -0.6 -2.9 DNA-binding protein compare
PS417_22630 -0.6 -1.6 hypothetical protein compare
PS417_20855 -0.6 -1.0 hypothetical protein compare
PS417_19995 -0.6 -3.8 Long-chain fatty acid transport protein compare
PS417_05560 -0.6 -2.0 ABC transporter compare
PS417_20705 -0.6 -3.5 cbb3-type cytochrome c oxidase subunit II compare
PS417_18445 -0.6 -1.6 glycerol-3-phosphatase compare
PS417_19145 -0.6 -4.5 membrane protein compare
PS417_18915 -0.6 -1.3 hypothetical protein compare
PS417_21515 -0.6 -3.9 transcriptional regulator compare
PS417_10400 -0.6 -2.1 membrane protein compare
PS417_21700 -0.6 -2.0 arginine N-succinyltransferase compare
PS417_22205 -0.6 -4.0 potassium transporter TrkH compare
PS417_19620 -0.6 -1.4 hypothetical protein compare
PS417_15780 -0.6 -2.0 membrane protein compare
PS417_24270 -0.6 -2.2 threonine transporter RhtB compare
PS417_01285 -0.6 -2.0 haloacid dehalogenase compare
PS417_12490 -0.6 -1.2 autotransporter adhesin compare
PS417_02630 -0.6 -2.3 NAD synthetase compare
PS417_23915 -0.6 -2.9 pantoate--beta-alanine ligase compare
PS417_20785 -0.6 -3.0 transcriptional regulator compare
PS417_27665 -0.6 -2.4 diguanylate cyclase compare
PS417_23855 -0.5 -1.6 ABC transporter substrate-binding protein compare
PS417_27075 -0.5 -3.0 thiol-disulfide isomerase compare
PS417_14080 -0.5 -1.8 hypothetical protein compare
PS417_16055 -0.5 -1.4 biopolymer transporter TolR compare
PS417_01600 -0.5 -2.2 peptidase M23 compare
PS417_19660 -0.5 -2.8 cobalamin biosynthesis protein CobQ compare
PS417_15115 -0.5 -1.5 exonuclease SbcD compare
PS417_12565 -0.5 -2.0 2-dehydro-3-deoxygluconokinase compare
PS417_11670 -0.5 -1.6 multidrug transporter MATE compare
PS417_08510 -0.5 -1.8 LysR family transcriptional regulator compare
PS417_26240 -0.5 -1.8 N-methylproline demethylase compare
PS417_08945 -0.5 -3.7 heat shock protein 90 compare
PS417_17240 -0.5 -1.8 trigger factor compare
PS417_22445 -0.5 -2.4 ATP-dependent DNA helicase RuvB compare
PS417_16555 -0.5 -1.1 cupin compare
PS417_09615 -0.5 -2.8 glycosyl transferase family 1 compare
PS417_05975 -0.5 -0.6 chemotaxis protein CheW compare
PS417_19720 -0.5 -0.9 DNA-binding protein compare
PS417_08155 -0.5 -1.2 integration host factor subunit beta compare
PS417_27585 -0.5 -1.7 diaminopimelate epimerase compare
PS417_21430 -0.5 -2.0 3-oxoacyl-ACP synthase compare
PS417_20310 -0.5 -1.8 hypothetical protein compare
PS417_24990 -0.5 -2.0 exotoxin compare
PS417_11865 -0.5 -1.4 xylose isomerase compare
PS417_24675 -0.5 -1.2 lipoyl synthase compare
PS417_10455 -0.5 -1.3 membrane protein compare
PS417_20515 -0.5 -2.0 FMN-dependent NADH-azoreductase compare
PS417_26730 -0.5 -0.8 pyrroline-5-carboxylate reductase compare
PS417_16000 -0.5 -1.1 chemotaxis protein CheY compare
PS417_06245 -0.5 -1.7 zinc metallopeptidase RseP compare
PS417_22565 -0.5 -1.0 formyltetrahydrofolate deformylase compare
PS417_21780 -0.5 -2.2 argininosuccinate lyase compare
PS417_19610 -0.5 -1.6 molybdenum cofactor sulfurase compare
PS417_20755 -0.5 -2.5 membrane protein compare
PS417_14185 -0.5 -1.3 transcriptional regulator compare
PS417_17945 -0.5 -0.6 hypothetical protein compare
PS417_15105 -0.5 -3.4 membrane protein compare
PS417_00080 -0.5 -3.7 potassium transporter peripheral membrane component compare
PS417_22575 -0.5 -2.7 exonuclease I compare
PS417_01560 -0.5 -1.2 imidazoleglycerol-phosphate dehydratase compare
PS417_27865 -0.5 -2.3 LysR family transcriptional regulator compare
PS417_26470 -0.5 -1.0 cytochrome C compare
PS417_11400 -0.4 -1.2 phosphoglycerate mutase compare
PS417_18780 -0.4 -0.8 flavin reductase compare
PS417_22300 -0.4 -1.0 LTXXQ domain protein compare
PS417_26520 -0.4 -2.9 amino acid ABC transporter substrate-binding protein compare
PS417_19490 -0.4 -2.2 mechanosensitive ion channel protein compare
PS417_19010 -0.4 -2.2 LysR family transcriptional regulator compare
PS417_04170 -0.4 -2.1 stringent starvation protein A compare
PS417_17160 -0.4 -1.7 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_14980 -0.4 -0.7 universal stress protein UspA compare
PS417_06465 -0.4 -2.5 transcriptional regulator compare
PS417_11120 -0.4 -2.5 UDP pyrophosphate phosphatase compare
PS417_16715 -0.4 -0.9 DoxX family protein compare
PS417_21425 -0.4 -0.9 4-amino-4-deoxychorismate lyase compare
PS417_02020 -0.4 -1.8 LysR family transcriptional regulator compare
PS417_00380 -0.4 -0.8 zinc ABC transporter ATP-binding protein compare
PS417_11885 -0.4 -1.7 Inositol transport system sugar-binding protein (from data) compare
PS417_11510 -0.4 -0.9 AraC family transcriptional regulator compare
PS417_02740 -0.4 -1.2 LysR family transcriptional regulator compare
PS417_01620 -0.4 -1.6 preprotein translocase subunit SecB compare
PS417_25730 -0.4 -2.0 phosphoglycolate phosphatase compare
PS417_23580 -0.4 -0.7 peptidylprolyl isomerase compare
PS417_18990 -0.4 -1.6 membrane protein compare
PS417_23025 -0.4 -2.6 murein transglycosylase compare
PS417_08130 -0.4 -0.8 aspartate aminotransferase compare
PS417_09290 -0.4 -2.0 catalase compare
PS417_07700 -0.4 -1.0 chromosome partitioning protein ParA compare
PS417_21680 -0.4 -1.6 succinylglutamate desuccinylase compare
PS417_19650 -0.4 -1.4 chemotaxis protein CheW compare
PS417_16990 -0.4 -2.5 acyl-CoA dehydrogenase compare
PS417_02995 -0.4 -1.8 NUDIX hydrolase compare
PS417_05815 -0.4 -1.8 recombinase RecA compare
PS417_07470 -0.4 -0.7 hypothetical protein compare
PS417_08045 -0.4 -0.9 uracil permease compare
PS417_05040 -0.4 -2.1 amino acid dehydrogenase compare
PS417_19335 -0.4 -1.4 isochorismatase compare
PS417_18620 -0.4 -1.7 hypothetical protein compare
PS417_19950 -0.4 -2.1 ATP-dependent DNA helicase RecQ compare
PS417_26420 -0.4 -1.0 hypothetical protein compare
PS417_08025 -0.4 -0.7 acetylornithine aminotransferase compare
PS417_00920 -0.4 -2.0 diguanylate cyclase compare
PS417_05500 -0.4 -1.8 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_09925 -0.4 -2.0 hypothetical protein compare
PS417_00620 -0.4 -2.9 GntR family transcriptional regulator compare
PS417_06145 -0.4 -0.7 hypothetical protein compare
PS417_23420 -0.4 -1.8 LuxR family transcriptional regulator compare
PS417_15040 -0.4 -2.6 DNA-binding protein compare
PS417_21360 -0.4 -0.7 termination factor Rho compare
PS417_18410 -0.4 -2.5 glutaminase compare
PS417_20170 -0.4 -1.5 hypothetical protein compare
PS417_05795 -0.4 -2.6 lysozyme compare
PS417_01425 -0.4 -1.3 AraC family transcriptional regulator compare
PS417_16685 -0.4 -2.3 multidrug MFS transporter compare
PS417_05065 -0.4 -1.2 hypothetical protein compare
PS417_08730 -0.4 -0.6 cytochrome C compare
PS417_01130 -0.4 -1.6 L-glyceraldehyde 3-phosphate reductase compare
PS417_12560 -0.4 -2.4 MFS transporter compare
PS417_17610 -0.4 -0.8 AsnC family transcriptional regulator compare
PS417_00175 -0.4 -0.8 CigR compare
PS417_18540 -0.4 -1.4 colicin V production CvpA compare
PS417_08430 -0.4 -1.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_22015 -0.4 -2.0 hypothetical protein compare
PS417_02385 -0.4 -0.9 esterase compare
PS417_15215 -0.4 -1.0 protein activator of alkane oxidation PraA compare
PS417_19155 -0.4 -1.6 DSBA oxidoreductase compare
PS417_24500 -0.4 -1.6 DEAD/DEAH box helicase compare
PS417_11535 -0.4 -1.3 nicotinate phosphoribosyltransferase compare
PS417_23475 -0.4 -0.8 hypothetical protein compare
PS417_06850 -0.4 -1.9 methanol dehydrogenase compare
PS417_13185 -0.4 -0.9 RND transporter compare
PS417_24705 -0.4 -1.3 D-alanyl-D-alanine carboxypeptidase compare
PS417_07865 -0.4 -1.2 hypothetical protein compare
PS417_15160 -0.4 -1.0 hypothetical protein compare
PS417_20700 -0.4 -2.8 cbb3-type cytochrome c oxidase subunit I compare
PS417_24310 -0.4 -1.4 ankyrin compare
PS417_17455 -0.4 -1.7 cytochrome C compare
PS417_20875 -0.4 -1.5 chromosome segregation protein SMC compare
PS417_20985 -0.4 -1.2 porin compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress Dimethyl Sulfoxide across organisms