Experiment set1IT015 for Rhizobium sp. OAE497

Compare to:

a-Cyclodextrin carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS19355 -6.9 -4.5 thioredoxin compare
ABIE40_RS09155 -6.7 -4.6 DUF934 domain-containing protein compare
ABIE40_RS02340 -6.7 -6.6 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS18380 -6.7 -6.5 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS19050 -6.6 -6.5 3-isopropylmalate dehydrogenase compare
ABIE40_RS11950 -6.5 -4.5 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS00245 -6.4 -7.6 prephenate dehydratase compare
ABIE40_RS17525 -6.1 -3.0 lipoprotein compare
ABIE40_RS18590 -5.8 -15.1 homoserine O-succinyltransferase compare
ABIE40_RS09150 -5.7 -15.7 nitrite/sulfite reductase compare
ABIE40_RS19040 -5.7 -6.8 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS09095 -5.7 -3.9 PAS domain-containing sensor histidine kinase compare
ABIE40_RS18775 -5.6 -14.6 pyruvate carboxylase compare
ABIE40_RS06555 -5.6 -2.8 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS17530 -5.4 -3.7 diaminopimelate decarboxylase compare
ABIE40_RS09545 -5.4 -3.1 anthranilate phosphoribosyltransferase compare
ABIE40_RS13330 -5.2 -13.6 2-isopropylmalate synthase compare
ABIE40_RS03665 -5.2 -3.6 ATP phosphoribosyltransferase compare
ABIE40_RS05975 -5.2 -12.1 5-deoxy-glucuronate isomerase compare
ABIE40_RS08635 -5.2 -7.9 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS02725 -5.2 -3.6 histidinol dehydrogenase compare
ABIE40_RS01970 -5.2 -3.6 acetylglutamate kinase compare
ABIE40_RS30475 -5.1 -2.8 metalloregulator ArsR/SmtB family transcription factor compare
ABIE40_RS02325 -5.1 -3.5 ornithine carbamoyltransferase compare
ABIE40_RS10725 -5.1 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS19435 -5.1 -2.5 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS03660 -5.1 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS16320 -5.1 -6.0 histidinol-phosphatase compare
ABIE40_RS20460 -5.0 -3.3 precorrin-3B synthase compare
ABIE40_RS05980 -4.9 -10.2 myo-inosose-2 dehydratase compare
ABIE40_RS19460 -4.9 -3.4 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS09660 -4.8 -15.0 AI-2E family transporter compare
ABIE40_RS11105 -4.8 -3.3 cobyrinate a,c-diamide synthase compare
ABIE40_RS06930 -4.8 -3.3 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS20450 -4.8 -3.3 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS06560 -4.7 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS19440 -4.7 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS11175 -4.7 -3.2 cobyric acid synthase compare
ABIE40_RS19330 -4.7 -3.2 phosphoribosylanthranilate isomerase compare
ABIE40_RS09725 -4.7 -3.2 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS16645 -4.6 -20.3 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS03335 -4.6 -13.2 CoA-acylating methylmalonate-semialdehyde dehydrogenase compare
ABIE40_RS13410 -4.6 -3.2 anthranilate synthase compare
ABIE40_RS11165 -4.5 -2.6 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS30895 -4.5 -2.4 cytochrome o ubiquinol oxidase subunit IV compare
ABIE40_RS06270 -4.5 -6.1 amidophosphoribosyltransferase compare
ABIE40_RS09360 -4.5 -3.1 excinuclease ABC subunit UvrA compare
ABIE40_RS20440 -4.4 -2.9 cobalt-precorrin-6A reductase compare
ABIE40_RS04215 -4.4 -3.6 sensor domain-containing phosphodiesterase compare
ABIE40_RS01930 -4.4 -2.2 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS19490 -4.4 -15.0 malate synthase G compare
ABIE40_RS17650 -4.4 -4.3 cobaltochelatase subunit CobS compare
ABIE40_RS02345 -4.4 -3.0 2'-deoxycytidine 5'-triphosphate deaminase compare
ABIE40_RS20435 -4.4 -3.0 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS11095 -4.3 -3.0 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS05985 -4.3 -11.7 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing) compare
ABIE40_RS09645 -4.2 -13.1 triose-phosphate isomerase compare
ABIE40_RS19130 -4.1 -2.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS20455 -4.1 -2.0 precorrin-8X methylmutase compare
ABIE40_RS09090 -4.0 -7.7 nitrogen regulation protein NR(I) compare
ABIE40_RS14980 -4.0 -4.8 glycoside hydrolase family 16 protein compare
ABIE40_RS20430 -4.0 -2.8 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS06730 -4.0 -5.7 riboflavin synthase compare
ABIE40_RS14985 -4.0 -2.3 glycosyltransferase compare
ABIE40_RS05990 -4.0 -12.7 5-dehydro-2-deoxygluconokinase compare
ABIE40_RS11150 -4.0 -8.5 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS07105 -3.9 -3.4 DNA-binding protein HupB compare
ABIE40_RS10180 -3.9 -5.3 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS08005 -3.9 -2.7 dihydroxy-acid dehydratase compare
ABIE40_RS03405 -3.9 -2.7 anti-sigma factor compare
ABIE40_RS27255 -3.9 -1.9 hypothetical protein compare
ABIE40_RS19445 -3.9 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS20465 -3.9 -2.7 precorrin-6A synthase (deacetylating) compare
ABIE40_RS17645 -3.9 -2.7 cobaltochelatase subunit CobT compare
ABIE40_RS18920 -3.9 -3.7 glutamate 5-kinase compare
ABIE40_RS15890 -3.8 -6.9 fructose bisphosphate aldolase compare
ABIE40_RS12135 -3.8 -2.6 methionine synthase compare
ABIE40_RS14990 -3.8 -11.5 glycosyltransferase family 2 protein compare
ABIE40_RS11495 -3.7 -7.8 acetolactate synthase 3 large subunit compare
ABIE40_RS12925 -3.7 -13.1 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS02320 -3.6 -6.0 aspartate aminotransferase family protein compare
ABIE40_RS16070 -3.6 -4.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS11155 -3.6 -8.3 cobaltochelatase subunit CobN compare
ABIE40_RS17595 -3.5 -6.3 histidinol-phosphate transaminase compare
ABIE40_RS17590 -3.5 -2.4 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS18925 -3.4 -7.2 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS00935 -3.4 -5.7 ABC transporter substrate-binding protein compare
ABIE40_RS10720 -3.4 -3.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS19450 -3.4 -5.7 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS10155 -3.3 -1.8 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS11910 -3.3 -6.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
ABIE40_RS30655 -3.3 -2.2 hypothetical protein compare
ABIE40_RS20445 -3.1 -1.3 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS13930 -3.1 -8.8 inositol 2-dehydrogenase compare
ABIE40_RS09140 -3.1 -7.0 siroheme synthase CysG compare
ABIE40_RS05430 -3.1 -4.1 phosphoribosylamine--glycine ligase compare
ABIE40_RS07320 -3.0 -1.7 DUF3572 domain-containing protein compare
ABIE40_RS16655 -3.0 -6.0 creatininase family protein compare
ABIE40_RS00930 -3.0 -7.5 ABC transporter permease compare
ABIE40_RS09540 -3.0 -6.2 peptidylprolyl isomerase compare
ABIE40_RS18855 -3.0 -9.5 ABC transporter permease compare
ABIE40_RS00580 -3.0 -3.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS00725 -2.9 -5.5 DNA cytosine methyltransferase compare
ABIE40_RS19365 -2.9 -3.4 double-strand break repair protein AddB compare
ABIE40_RS08935 -2.9 -3.8 RIP metalloprotease RseP compare
ABIE40_RS18860 -2.9 -7.8 sugar ABC transporter ATP-binding protein compare
ABIE40_RS06050 -2.9 -6.8 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS27930 -2.9 -1.2 nuclear transport factor 2 family protein compare
ABIE40_RS05660 -2.9 -3.4 response regulator transcription factor compare
ABIE40_RS15855 -2.8 -2.4 cell division protein ZapA compare
ABIE40_RS18880 -2.8 -11.3 UDP-glucose 4-epimerase GalE compare
ABIE40_RS18865 -2.8 -6.0 sugar ABC transporter substrate-binding protein compare
ABIE40_RS08645 -2.8 -6.2 LL-diaminopimelate aminotransferase compare
ABIE40_RS18685 -2.8 -3.9 beta-ketoacyl-ACP reductase compare
ABIE40_RS12395 -2.7 -3.6 AlpA family phage regulatory protein compare
ABIE40_RS14955 -2.7 -7.2 sugar transferase compare
ABIE40_RS02730 -2.7 -7.1 UPF0262 family protein compare
ABIE40_RS13375 -2.7 -1.1 MarR family transcriptional regulator compare
ABIE40_RS09720 -2.6 -3.9 GTP cyclohydrolase I FolE compare
ABIE40_RS08140 -2.6 -12.4 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS23670 -2.6 -2.3 hypothetical protein compare
ABIE40_RS26150 -2.6 -0.9 hypothetical protein compare
ABIE40_RS04320 -2.6 -12.1 pyruvate, phosphate dikinase compare
ABIE40_RS30495 -2.6 -1.1 LuxR C-terminal-related transcriptional regulator compare
ABIE40_RS08500 -2.6 -2.3 preprotein translocase subunit YajC compare
ABIE40_RS15345 -2.5 -8.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS09425 -2.5 -5.3 peptidylprolyl isomerase compare
ABIE40_RS29115 -2.4 -1.2 DUF3606 domain-containing protein compare
ABIE40_RS04465 -2.4 -12.0 sulfate adenylyltransferase subunit CysN compare
ABIE40_RS00340 -2.4 -3.2 30S ribosome-binding factor RbfA compare
ABIE40_RS06710 -2.3 -3.5 L,D-transpeptidase family protein compare
ABIE40_RS08425 -2.3 -3.0 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS03325 -2.3 -9.7 LysR family transcriptional regulator compare
ABIE40_RS29180 -2.2 -1.6 FAD-dependent oxidoreductase compare
ABIE40_RS19480 -2.2 -3.6 DUF1402 family protein compare
ABIE40_RS26805 -2.2 -1.8 chaperone modulator CbpM compare
ABIE40_RS00925 -2.2 -4.4 ABC transporter permease compare
ABIE40_RS04470 -2.1 -9.8 sulfate adenylyltransferase subunit CysD compare
ABIE40_RS15745 -2.1 -3.8 Holliday junction branch migration protein RuvA compare
ABIE40_RS06725 -2.1 -4.0 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS18255 -2.1 -1.7 hypothetical protein compare
ABIE40_RS11960 -2.1 -2.0 energy-dependent translational throttle protein EttA compare
ABIE40_RS04475 -2.1 -6.4 phosphoadenylyl-sulfate reductase compare
ABIE40_RS21665 -2.1 -2.7 ABC transporter ATP-binding protein compare
ABIE40_RS10140 -2.0 -3.3 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS16060 -2.0 -2.6 DUF465 domain-containing protein compare
ABIE40_RS15920 -2.0 -0.8 50S ribosomal protein L31 compare
ABIE40_RS05155 -2.0 -3.2 DUF5330 domain-containing protein compare
ABIE40_RS28765 -2.0 -1.4 chemotaxis protein CheX compare
ABIE40_RS26855 -1.9 -1.5 hypothetical protein compare
ABIE40_RS17560 -1.9 -3.7 cell division ATP-binding protein FtsE compare
ABIE40_RS10200 -1.9 -1.5 Grx4 family monothiol glutaredoxin compare
ABIE40_RS23725 -1.9 -2.3 hypothetical protein compare
ABIE40_RS05165 -1.9 -4.8 peptidoglycan-binding protein compare
ABIE40_RS22660 -1.9 -2.9 class 1b ribonucleoside-diphosphate reductase subunit alpha compare
ABIE40_RS19260 -1.9 -2.4 DNA polymerase III subunit epsilon compare
ABIE40_RS05665 -1.9 -3.1 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS29785 -1.8 -1.6 hypothetical protein compare
ABIE40_RS23635 -1.8 -0.9 hypothetical protein compare
ABIE40_RS10590 -1.8 -2.0 hypothetical protein compare
ABIE40_RS06775 -1.8 -2.7 DUF177 domain-containing protein compare
ABIE40_RS27100 -1.7 -0.9 type II toxin-antitoxin system VapC family toxin compare
ABIE40_RS26445 -1.7 -2.2 ribonuclease activity regulator RraA compare
ABIE40_RS14455 -1.7 -2.5 NepR family anti-sigma factor compare
ABIE40_RS08980 -1.7 -3.4 transcriptional repressor LexA compare
ABIE40_RS03190 -1.7 -3.6 phosphogluconate dehydratase compare
ABIE40_RS16170 -1.7 -2.3 DUF882 domain-containing protein compare
ABIE40_RS01055 -1.7 -4.1 translation elongation factor 4 compare
ABIE40_RS09145 -1.7 -3.6 DUF2849 domain-containing protein compare
ABIE40_RS12360 -1.7 -7.3 DUF5131 family protein compare
ABIE40_RS07200 -1.6 -1.2 NADH-quinone oxidoreductase subunit E compare
ABIE40_RS10345 -1.6 -3.5 RNA polymerase-binding protein DksA compare
ABIE40_RS06565 -1.6 -1.9 AI-2E family transporter compare
ABIE40_RS28065 -1.6 -1.5 hypothetical protein compare
ABIE40_RS01860 -1.6 -6.8 RNA polymerase factor sigma-54 compare
ABIE40_RS15645 -1.6 -3.7 5-formyltetrahydrofolate cyclo-ligase compare
ABIE40_RS08865 -1.5 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABIE40_RS20340 -1.5 -3.3 histidine utilization repressor compare
ABIE40_RS06645 -1.5 -1.3 hypothetical protein compare
ABIE40_RS16390 -1.5 -0.9 hypothetical protein compare
ABIE40_RS29400 -1.5 -2.9 HWE histidine kinase domain-containing protein compare
ABIE40_RS19245 -1.5 -2.6 Maf-like protein compare
ABIE40_RS30775 -1.5 -1.2 ferritin-like domain-containing protein compare
ABIE40_RS01765 -1.5 -3.2 [protein-PII] uridylyltransferase compare
ABIE40_RS09875 -1.5 -3.1 YaiI/YqxD family protein compare
ABIE40_RS18055 -1.5 -3.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS29245 -1.4 -2.1 hypothetical protein compare
ABIE40_RS13195 -1.4 -1.2 metalloregulator ArsR/SmtB family transcription factor compare
ABIE40_RS10390 -1.4 -1.4 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS08330 -1.4 -2.0 hypothetical protein compare
ABIE40_RS09170 -1.4 -3.1 cytochrome c biogenesis CcdA family protein compare
ABIE40_RS09940 -1.4 -5.3 glycine cleavage system aminomethyltransferase GcvT compare
ABIE40_RS27685 -1.4 -1.2 hypothetical protein compare
ABIE40_RS18735 -1.4 -4.1 TetR/AcrR family transcriptional regulator compare
ABIE40_RS15590 -1.4 -2.2 tol-pal system protein YbgF compare
ABIE40_RS09525 -1.4 -1.6 hypothetical protein compare
ABIE40_RS03255 -1.3 -6.6 isocitrate lyase compare
ABIE40_RS09950 -1.3 -7.6 aminomethyl-transferring glycine dehydrogenase compare
ABIE40_RS13370 -1.3 -5.9 CDF family cation efflux transporter EmfA compare
ABIE40_RS23000 -1.3 -2.1 TetR/AcrR family transcriptional regulator compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source a-Cyclodextrin in Rhizobium sp. OAE497

For carbon source a-Cyclodextrin across organisms