Experiment set1IT015 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_0322 -8.2 -5.7 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_0327 -8.0 -5.3 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_2867 -6.5 -7.6 glycerate kinase compare
EX28DRAFT_0323 -6.4 -4.0 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_0331 -6.4 -2.5 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_2252 -6.4 -2.0 TolA protein compare
EX28DRAFT_0324 -6.4 -2.8 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0332 -6.4 -9.1 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0330 -6.4 -2.4 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_0334 -6.2 -2.4 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_0328 -6.2 -1.4 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_2272 -6.1 -12.3 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0286 -6.0 -2.3 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_0325 -5.9 -3.7 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_2548 -5.5 -3.9 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_0333 -5.4 -6.0 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_2027 -5.2 -5.5 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_4156 -5.1 -1.9 ribulose-phosphate 3-epimerase compare
EX28DRAFT_3710 -5.1 -3.5 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_0321 -4.9 -1.1 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_0726 -4.9 -4.0 C-terminal peptidase (prc) compare
EX28DRAFT_0329 -4.7 -5.0 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_2945 -4.3 -1.9 tyrosine recombinase XerD compare
EX28DRAFT_2045 -4.3 -1.0 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_0778 -4.3 -1.3 hypothetical protein compare
EX28DRAFT_3643 -4.1 -4.2 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_0038 -4.1 -2.1 K+ transport systems, NAD-binding component compare
EX28DRAFT_0111 -4.0 -1.6 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0769 -4.0 -1.3 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_4386 -3.9 -3.7 Signal transduction histidine kinase compare
EX28DRAFT_3285 -3.9 -7.0 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_3079 -3.7 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2265 -3.5 -1.1 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0129 -3.4 -1.3 RNA compare
EX28DRAFT_4452 -3.3 -2.0 thioredoxin compare
EX28DRAFT_1719 -3.2 -0.9 integration host factor, alpha subunit compare
EX28DRAFT_3368 -3.2 -1.0 tRNA dimethylallyltransferase compare
EX28DRAFT_2864 -3.2 -6.2 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_0312 -3.2 -3.4 phosphate acetyltransferase compare
EX28DRAFT_0523 -3.2 -1.4 Glycosyltransferase like family 2 compare
EX28DRAFT_2250 -3.1 -3.1 peptidoglycan-associated lipoprotein compare
EX28DRAFT_2724 -3.0 -2.1 RNA compare
EX28DRAFT_2958 -3.0 -0.9 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_1650 -3.0 -1.3 ribonuclease T compare
EX28DRAFT_3675 -2.9 -7.3 transcriptional regulator, LacI family compare
EX28DRAFT_1740 -2.9 -0.9 Phosphotransferase system cellobiose-specific component IIA compare
EX28DRAFT_4153 -2.8 -2.8 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_3711 -2.8 -0.9 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_2298 -2.8 -9.2 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_4478 -2.8 -4.4 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_3647 -2.8 -5.2 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_3851 -2.7 -7.9 Transcriptional regulator compare
EX28DRAFT_2541 -2.7 -1.2 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_1700 -2.7 -1.4 hypothetical protein compare
EX28DRAFT_0132 -2.6 -5.4 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_3314 -2.6 -0.6 Factor for inversion stimulation Fis, transcriptional activator compare
EX28DRAFT_2270 -2.5 -1.0 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_3754 -2.5 -1.1 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_4297 -2.5 -1.1 cell division ATP-binding protein FtsE compare
EX28DRAFT_2539 -2.5 -4.3 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_2531 -2.5 -3.2 endopeptidase La compare
EX28DRAFT_4341 -2.5 -2.7 Protein-disulfide isomerase compare
EX28DRAFT_2851 -2.4 -2.7 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_3372 -2.4 -4.4 HflC protein compare
EX28DRAFT_3058 -2.4 -2.3 Signal transduction histidine kinase compare
EX28DRAFT_0092 -2.3 -2.1 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_2264 -2.3 -6.9 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_3645 -2.3 -2.1 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_0857 -2.3 -1.3 tRNA compare
EX28DRAFT_2714 -2.3 -5.7 ABC-type uncharacterized transport system, permease component compare
EX28DRAFT_4419 -2.3 -3.0 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_4155 -2.3 -3.7 DNA adenine methylase (dam) compare
EX28DRAFT_0545 -2.3 -3.1 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_2050 -2.2 -8.7 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_4350 -2.2 -1.3 nitrogen regulation protein NR(I) compare
EX28DRAFT_2400 -2.2 -1.0 Cold shock proteins compare
EX28DRAFT_4347 -2.2 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2893 -2.1 -7.5 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_2046 -2.1 -1.9 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_4507 -2.1 -3.1 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_2299 -2.1 -6.9 Transcriptional regulator/sugar kinase compare
EX28DRAFT_2963 -2.0 -3.7 RNA compare
EX28DRAFT_0076 -2.0 -2.7 elongation factor 4 compare
EX28DRAFT_2263 -2.0 -2.7 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_0526 -2.0 -2.7 hypothetical protein compare
EX28DRAFT_1845 -2.0 -1.6 RNA compare
EX28DRAFT_0046 -2.0 -3.2 shikimate dehydrogenase compare
EX28DRAFT_1573 -1.9 -1.1 hypothetical protein compare
EX28DRAFT_1841 -1.9 -0.7 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_4061 -1.9 -4.9 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_0069 -1.9 -1.5 Superfamily II DNA and RNA helicases compare
EX28DRAFT_4184 -1.9 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0972 -1.9 -1.6 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_0755 -1.9 -5.8 ribonuclease D compare
EX28DRAFT_2452 -1.8 -7.2 transcriptional regulator, LacI family compare
EX28DRAFT_2267 -1.8 -3.1 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_2240 -1.8 -1.9 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_3616 -1.8 -2.9 threonine synthase compare
EX28DRAFT_3883 -1.8 -2.9 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2543 -1.8 -6.2 protoheme IX farnesyltransferase compare
EX28DRAFT_2695 -1.8 -2.9 pseudouridine synthase, RluA family compare
EX28DRAFT_4003 -1.8 -1.3 phosphate ABC transporter, permease protein PstC compare
EX28DRAFT_4120 -1.7 -4.4 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_4077 -1.7 -1.0 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_2985 -1.7 -4.4 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_3732 -1.7 -1.6 poly(A) polymerase compare
EX28DRAFT_0392 -1.7 -1.0 hypothetical protein compare
EX28DRAFT_0125 -1.7 -0.8 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_4421 -1.6 -1.1 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_1342 -1.6 -1.2 hypothetical protein compare
EX28DRAFT_2313 -1.6 -3.9 Putative Mg2+ and Co2+ transporter CorC compare
EX28DRAFT_2916 -1.6 -6.0 diaminopimelate decarboxylase compare
EX28DRAFT_2651 -1.6 -5.3 glutamate 5-kinase compare
EX28DRAFT_2877 -1.6 -6.4 Predicted Rossmann fold nucleotide-binding protein compare
EX28DRAFT_3371 -1.6 -5.8 HflK protein compare
EX28DRAFT_3282 -1.6 -1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3434 -1.6 -2.9 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_3073 -1.6 -3.3 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_2075 -1.6 -2.0 type II secretion system protein H compare
EX28DRAFT_3275 -1.6 -9.7 Glutamate synthase domain 2 compare
EX28DRAFT_2701 -1.6 -7.0 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2974 -1.6 -3.6 transketolase, bacterial and yeast compare
EX28DRAFT_1396 -1.5 -0.9 Amidases related to nicotinamidase compare
EX28DRAFT_4327 -1.5 -3.3 transcriptional regulator, IclR family compare
EX28DRAFT_4422 -1.5 -6.3 argininosuccinate lyase compare
EX28DRAFT_3297 -1.5 -3.9 ribonuclease, Rne/Rng family compare
EX28DRAFT_2938 -1.5 -1.4 tRNA compare
EX28DRAFT_1293 -1.5 -0.8 hypothetical protein compare
EX28DRAFT_3375 -1.5 -0.9 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_3438 -1.5 -7.0 alpha,alpha-phosphotrehalase compare
EX28DRAFT_4362 -1.5 -3.6 transcriptional regulator, DeoR family compare
EX28DRAFT_0922 -1.4 -1.6 TonB family C-terminal domain compare
EX28DRAFT_0730 -1.4 -1.3 YobH-like protein compare
EX28DRAFT_4461 -1.4 -2.8 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_0764 -1.4 -1.9 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_0073 -1.4 -1.2 Negative regulator of sigma E activity compare
EX28DRAFT_1596 -1.4 -0.7 Protein of unknown function (DUF1019) compare
EX28DRAFT_0081 -1.4 -3.5 DNA replication and repair protein RecO compare
EX28DRAFT_0166 -1.4 -6.6 polyphosphate kinase 1 compare
EX28DRAFT_4191 -1.4 -2.2 small GTP-binding protein domain compare
EX28DRAFT_0469 -1.4 -2.7 hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
EX28DRAFT_0529 -1.4 -3.7 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_4413 -1.4 -7.5 5,10-methylenetetrahydrofolate reductase, prokaryotic form compare
EX28DRAFT_0535 -1.4 -5.0 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) compare
EX28DRAFT_2271 -1.4 -2.2 hypothetical protein compare
EX28DRAFT_3224 -1.4 -4.3 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_3217 -1.4 -7.3 tRNA pseudouridine(55) synthase compare
EX28DRAFT_3259 -1.3 -2.5 Predicted P-loop-containing kinase compare
EX28DRAFT_3669 -1.3 -3.5 3-isopropylmalate dehydrogenase compare
EX28DRAFT_0537 -1.3 -6.7 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
EX28DRAFT_3426 -1.3 -0.7 conserved hypothetical protein EF_0831/AHA_3912 compare
EX28DRAFT_0521 -1.3 -2.5 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2774 -1.3 -3.6 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_0621 -1.3 -2.2 flagellar biosynthetic protein FliS compare
EX28DRAFT_2997 -1.3 -6.0 tRNA (guanine-N(7)-)-methyltransferase compare
EX28DRAFT_1784 -1.3 -2.9 hypothetical protein compare
EX28DRAFT_4318 -1.3 -3.1 Glucose-6-phosphate isomerase compare
EX28DRAFT_3670 -1.3 -6.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_2585 -1.3 -1.5 pyrroline-5-carboxylate reductase compare
EX28DRAFT_2277 -1.3 -1.1 dinuclear metal center protein, YbgI/SA1388 family compare
EX28DRAFT_3276 -1.2 -3.9 glutamate synthase small subunit family protein, proteobacterial compare
EX28DRAFT_2723 -1.2 -1.5 SsrA-binding protein compare
EX28DRAFT_0305 -1.2 -3.9 Isopentenyldiphosphate isomerase compare
EX28DRAFT_3212 -1.2 -3.5 Lipoprotein NlpI, contains TPR repeats compare
EX28DRAFT_1691 -1.2 -2.1 hypothetical protein compare
EX28DRAFT_3309 -1.2 -2.4 Predicted membrane protein compare
EX28DRAFT_4384 -1.2 -2.2 Superoxide dismutase compare
EX28DRAFT_0843 -1.2 -1.4 nitrate ABC transporter, permease protein compare
EX28DRAFT_4324 -1.2 -1.9 probable addiction module antidote protein compare
EX28DRAFT_2043 -1.2 -5.6 transcriptional regulator, AsnC family compare
EX28DRAFT_2051 -1.2 -4.9 Uncharacterized conserved protein compare
EX28DRAFT_4459 -1.2 -5.6 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_0540 -1.2 -6.0 ATP phosphoribosyltransferase compare
EX28DRAFT_0936 -1.2 -3.8 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_3719 -1.2 -2.5 Bacterial chaperone lipoprotein (PulS_OutS) compare
EX28DRAFT_4446 -1.2 -5.7 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_2540 -1.1 -2.1 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_1608 -1.1 -4.1 fumarase, class II (EC 4.2.1.2) compare
EX28DRAFT_3597 -1.1 -1.5 DNA repair protein RadA compare
EX28DRAFT_0531 -1.1 -5.0 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_3668 -1.1 -4.3 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_3127 -1.1 -2.2 DinI-like family compare
EX28DRAFT_0732 -1.1 -2.0 YebO-like protein compare
EX28DRAFT_3187 -1.1 -2.0 PTS system, mannose/fructose/sorbose family, IIB component compare
EX28DRAFT_0468 -1.1 -2.0 hydroxyethylthiazole kinase compare
EX28DRAFT_0594 -1.1 -0.8 T/G mismatch-specific endonuclease (EC 3.1.-.-) compare
EX28DRAFT_0292 -1.1 -1.4 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_1679 -1.1 -2.1 pyruvate kinase compare
EX28DRAFT_1819 -1.1 -2.9 transcriptional regulator, TetR family compare
EX28DRAFT_2846 -1.1 -1.8 adenylyl-sulfate kinase compare
EX28DRAFT_3901 -1.1 -3.5 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_1986 -1.1 -1.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_0145 -1.1 -1.4 Protein of unknown function (DUF1641) compare
EX28DRAFT_2269 -1.1 -3.0 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_3537 -1.1 -2.7 Predicted transcriptional regulator compare
EX28DRAFT_0306 -1.1 -5.9 transcriptional regulator, LacI family compare
EX28DRAFT_1477 -1.1 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1699 -1.0 -1.8 hypothetical protein compare
EX28DRAFT_2993 -1.0 -2.0 putative oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_2485 -1.0 -3.5 DNA replication and repair protein RecR compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in in planta experiments

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days across organisms