Experiment set1IT014 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_3643 -5.2 -5.0 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_0972 -4.0 -2.6 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_1986 -3.7 -1.6 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_3879 -3.6 -6.7 Glycosyltransferase compare
EX28DRAFT_4077 -3.1 -1.0 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_3711 -3.0 -1.0 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_4156 -3.0 -2.4 ribulose-phosphate 3-epimerase compare
EX28DRAFT_2252 -2.8 -3.4 TolA protein compare
EX28DRAFT_0526 -2.7 -3.6 hypothetical protein compare
EX28DRAFT_0769 -2.6 -1.6 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_2945 -2.5 -2.6 tyrosine recombinase XerD compare
EX28DRAFT_0517 -2.4 -5.4 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
EX28DRAFT_2250 -2.3 -3.3 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0531 -2.3 -9.6 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_4505 -2.3 -4.2 transcription elongation factor/antiterminator RfaH compare
EX28DRAFT_0038 -2.2 -2.4 K+ transport systems, NAD-binding component compare
EX28DRAFT_1650 -2.2 -2.3 ribonuclease T compare
EX28DRAFT_4318 -2.2 -5.3 Glucose-6-phosphate isomerase compare
EX28DRAFT_0778 -2.1 -1.5 hypothetical protein compare
EX28DRAFT_3883 -2.1 -4.8 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2958 -2.1 -1.4 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_1250 -2.1 -1.4 Protein of unknown function (DUF421) compare
EX28DRAFT_1719 -2.1 -1.1 integration host factor, alpha subunit compare
EX28DRAFT_0523 -2.0 -1.5 Glycosyltransferase like family 2 compare
EX28DRAFT_0073 -1.9 -1.6 Negative regulator of sigma E activity compare
EX28DRAFT_1700 -1.9 -1.6 hypothetical protein compare
EX28DRAFT_0857 -1.9 -1.5 tRNA compare
EX28DRAFT_2974 -1.9 -6.4 transketolase, bacterial and yeast compare
EX28DRAFT_0521 -1.9 -2.6 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_4386 -1.8 -4.0 Signal transduction histidine kinase compare
EX28DRAFT_2531 -1.8 -2.7 endopeptidase La compare
EX28DRAFT_3645 -1.8 -4.4 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_2046 -1.8 -2.7 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_3754 -1.7 -1.1 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_0091 -1.6 -1.3 hypothetical protein compare
EX28DRAFT_4184 -1.6 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0620 -1.6 -1.5 Flagellar protein FliT compare
EX28DRAFT_1477 -1.6 -1.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2240 -1.6 -3.0 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_2045 -1.6 -0.8 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_1620 -1.5 -1.2 hypothetical protein compare
EX28DRAFT_1031 -1.5 -1.4 Protein of unknown function (DUF2566) compare
EX28DRAFT_0545 -1.5 -2.3 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_0918 -1.5 -1.6 Ogr/Delta-like zinc finger compare
EX28DRAFT_3449 -1.5 -0.9 Predicted membrane protein compare
EX28DRAFT_0324 -1.5 -2.4 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_1268 -1.4 -1.8 Lysophospholipase L1 and related esterases compare
EX28DRAFT_2845 -1.4 -2.1 Protein of unknown function (DUF3561) compare
EX28DRAFT_0132 -1.4 -4.1 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_3849 -1.4 -2.9 PTS system, mannitol-specific IIC component compare
EX28DRAFT_3368 -1.4 -1.0 tRNA dimethylallyltransferase compare
EX28DRAFT_0529 -1.4 -3.3 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_3073 -1.4 -3.8 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_2259 -1.4 -2.8 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_2724 -1.4 -1.5 RNA compare
EX28DRAFT_0111 -1.3 -1.4 FeS cluster assembly scaffold IscU compare
EX28DRAFT_4544 -1.3 -1.8 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_4459 -1.3 -5.4 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_0818 -1.3 -1.9 hypothetical protein compare
EX28DRAFT_4461 -1.3 -2.9 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_1692 -1.3 -1.1 Biofilm development protein YmgB/AriR compare
EX28DRAFT_0764 -1.2 -2.4 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_3438 -1.2 -6.9 alpha,alpha-phosphotrehalase compare
EX28DRAFT_0833 -1.2 -2.5 Uncharacterized conserved protein compare
EX28DRAFT_4426 -1.2 -1.0 transcriptional regulator, TetR family compare
EX28DRAFT_4341 -1.2 -2.9 Protein-disulfide isomerase compare
EX28DRAFT_0579 -1.2 -1.0 Uncharacterized protein conserved in bacteria (DUF2256) compare
EX28DRAFT_3647 -1.2 -3.3 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_2067 -1.2 -1.3 Transglycosylase SLT domain compare
EX28DRAFT_3476 -1.1 -1.0 hypothetical protein compare
EX28DRAFT_0272 -1.1 -0.8 phosphohistidine phosphatase, SixA compare
EX28DRAFT_1844 -1.1 -1.0 pseudouridine synthase, RluA family compare
EX28DRAFT_0321 -1.1 -0.8 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_0084 -1.1 -2.5 4Fe-4S dicluster domain compare
EX28DRAFT_1679 -1.1 -4.0 pyruvate kinase compare
EX28DRAFT_3058 -1.1 -2.6 Signal transduction histidine kinase compare
EX28DRAFT_0312 -1.1 -2.2 phosphate acetyltransferase compare
EX28DRAFT_0706 -1.1 -1.9 Entner-Doudoroff aldolase compare
EX28DRAFT_0394 -1.1 -2.7 Phosphotransferase System HPr (HPr) Family compare
EX28DRAFT_2541 -1.1 -0.9 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_4452 -1.1 -1.5 thioredoxin compare
EX28DRAFT_2109 -1.1 -2.4 Reverse transcriptase (RNA-dependent DNA polymerase) compare
EX28DRAFT_2162 -1.1 -1.8 hypothetical protein compare
EX28DRAFT_3372 -1.1 -2.0 HflC protein compare
EX28DRAFT_3597 -1.1 -1.6 DNA repair protein RadA compare
EX28DRAFT_2864 -1.1 -2.6 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_0732 -1.1 -2.4 YebO-like protein compare
EX28DRAFT_2148 -1.1 -5.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3434 -1.1 -2.7 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_0602 -1.1 -0.9 Dextransucrase DSRB compare
EX28DRAFT_0074 -1.1 -5.8 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_0328 -1.1 -1.2 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_3089 -1.0 -0.6 Transcriptional regulators compare
EX28DRAFT_0697 -1.0 -1.6 ABC-type Mn2+/Zn2+ transport systems, permease components compare
EX28DRAFT_2489 -1.0 -3.9 adenine phosphoribosyltransferase (EC 2.4.2.7) compare
EX28DRAFT_0125 -1.0 -0.7 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_0524 -1.0 -3.0 hypothetical protein compare
EX28DRAFT_2424 -1.0 -2.7 transcriptional regulator, TetR family compare
EX28DRAFT_0255 -1.0 -1.5 Domain of unknown function (DUF4123) compare
EX28DRAFT_0092 -1.0 -1.1 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_3278 -1.0 -2.1 Glutathione S-transferase compare
EX28DRAFT_4296 -1.0 -2.3 putative protein insertion permease FtsX compare
EX28DRAFT_0758 -1.0 -2.5 septum site-determining protein MinC compare
EX28DRAFT_1332 -1.0 -1.2 Phage minor tail protein compare
EX28DRAFT_4421 -1.0 -0.9 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_2160 -1.0 -2.9 P pilus assembly protein, pilin FimA compare
EX28DRAFT_4061 -1.0 -3.2 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_4155 -1.0 -1.6 DNA adenine methylase (dam) compare
EX28DRAFT_1019 -1.0 -1.9 Putative hemolysin compare
EX28DRAFT_2565 -1.0 -4.2 tRNA-guanine transglycosylase compare
EX28DRAFT_4018 -1.0 -2.2 Flavodoxins compare
EX28DRAFT_1360 -1.0 -2.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0286 -1.0 -1.2 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_3205 -1.0 -2.5 Predicted acetyltransferase compare
EX28DRAFT_4191 -1.0 -2.0 small GTP-binding protein domain compare
EX28DRAFT_1510 -1.0 -2.0 hypothetical protein compare
EX28DRAFT_0061 -1.0 -2.5 Predicted periplasmic lipoprotein compare
EX28DRAFT_0116 -1.0 -1.7 FeS assembly protein IscX compare
EX28DRAFT_1305 -1.0 -2.1 hypothetical protein compare
EX28DRAFT_3264 -0.9 -3.3 PAS domain S-box compare
EX28DRAFT_3507 -0.9 -1.2 Response regulator compare
EX28DRAFT_0730 -0.9 -1.0 YobH-like protein compare
EX28DRAFT_1180 -0.9 -2.4 DNA-binding HTH domain-containing proteins compare
EX28DRAFT_3537 -0.9 -3.0 Predicted transcriptional regulator compare
EX28DRAFT_4478 -0.9 -2.4 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_0519 -0.9 -5.8 Predicted nucleoside-diphosphate sugar epimerases compare
EX28DRAFT_1039 -0.9 -1.0 Sortase and related acyltransferases compare
EX28DRAFT_3369 -0.9 -0.8 RNA chaperone Hfq compare
EX28DRAFT_2213 -0.9 -2.6 dethiobiotin synthase compare
EX28DRAFT_1056 -0.9 -1.1 ABC-type polar amino acid transport system, ATPase component compare
EX28DRAFT_0076 -0.9 -2.0 elongation factor 4 compare
EX28DRAFT_2400 -0.9 -0.7 Cold shock proteins compare
EX28DRAFT_0738 -0.9 -2.0 Predicted membrane protein compare
EX28DRAFT_3687 -0.9 -0.6 D-alanine--D-alanine ligase compare
EX28DRAFT_2189 -0.9 -2.1 P pilus assembly protein, chaperone PapD compare
EX28DRAFT_4348 -0.9 -1.4 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_3694 -0.9 -0.8 mutator mutT protein compare
EX28DRAFT_2873 -0.9 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0779 -0.9 -1.9 hypothetical protein compare
EX28DRAFT_3874 -0.9 -5.6 ADP-heptose:LPS heptosyltransferase compare
EX28DRAFT_3095 -0.9 -1.9 Urease accessory protein UreE compare
EX28DRAFT_2532 -0.9 -3.1 RNA compare
EX28DRAFT_1637 -0.9 -2.1 Outer membrane lipoprotein compare
EX28DRAFT_4297 -0.9 -0.6 cell division ATP-binding protein FtsE compare
EX28DRAFT_4405 -0.9 -0.7 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_0322 -0.8 -4.4 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_1175 -0.8 -3.3 Domain of unknown function (DUF4354) compare
EX28DRAFT_2225 -0.8 -3.5 3-carboxymuconate cyclase compare
EX28DRAFT_4158 -0.8 -2.3 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_1591 -0.8 -2.2 hypothetical protein compare
EX28DRAFT_3966 -0.8 -4.8 D-serine ammonia-lyase (EC 4.3.1.18) compare
EX28DRAFT_4350 -0.8 -0.9 nitrogen regulation protein NR(I) compare
EX28DRAFT_0068 -0.8 -0.8 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_1877 -0.8 -1.4 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
EX28DRAFT_3002 -0.8 -2.5 triphosphoribosyl-dephospho-CoA synthase CitG compare
EX28DRAFT_0874 -0.8 -1.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3616 -0.8 -2.9 threonine synthase compare
EX28DRAFT_3297 -0.8 -2.9 ribonuclease, Rne/Rng family compare
EX28DRAFT_3212 -0.8 -2.5 Lipoprotein NlpI, contains TPR repeats compare
EX28DRAFT_1508 -0.8 -1.2 Membrane transporters of cations and cationic drugs compare
EX28DRAFT_4419 -0.8 -2.1 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_3401 -0.8 -0.9 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_2985 -0.8 -2.5 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_4457 -0.8 -2.7 nucleotide sugar dehydrogenase compare
EX28DRAFT_1530 -0.8 -1.0 hypothetical protein compare
EX28DRAFT_0166 -0.8 -4.2 polyphosphate kinase 1 compare
EX28DRAFT_0988 -0.8 -2.6 beta-phosphoglucomutase compare
EX28DRAFT_4153 -0.8 -1.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_1715 -0.8 -1.5 Cell wall-associated hydrolases (invasion-associated proteins) compare
EX28DRAFT_2270 -0.8 -0.6 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_0386 -0.8 -2.9 Cell wall-associated hydrolases (invasion-associated proteins) compare
EX28DRAFT_3901 -0.8 -3.3 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_3876 -0.8 -4.6 Lipid A core - O-antigen ligase and related enzymes compare
EX28DRAFT_0755 -0.8 -3.0 ribonuclease D compare
EX28DRAFT_2530 -0.8 -1.0 Bacterial nucleoid DNA-binding protein compare
EX28DRAFT_1596 -0.8 -0.5 Protein of unknown function (DUF1019) compare
EX28DRAFT_1013 -0.8 -2.0 hypothetical protein compare
EX28DRAFT_0528 -0.8 -0.7 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase compare
EX28DRAFT_3408 -0.7 -1.9 Uncharacterized conserved protein compare
EX28DRAFT_1540 -0.7 -2.0 cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases compare
EX28DRAFT_0313 -0.7 -2.7 acetate kinase compare
EX28DRAFT_3185 -0.7 -1.8 transcriptional regulator, DeoR family compare
EX28DRAFT_0693 -0.7 -0.4 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_0292 -0.7 -1.6 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_0970 -0.7 -2.1 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_2485 -0.7 -2.3 DNA replication and repair protein RecR compare
EX28DRAFT_1087 -0.7 -2.3 CcdB protein compare
EX28DRAFT_1178 -0.7 -2.3 transcriptional regulator, DeoR family compare
EX28DRAFT_1308 -0.7 -0.9 hypothetical protein compare
EX28DRAFT_2993 -0.7 -2.0 putative oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_2075 -0.7 -1.6 type II secretion system protein H compare
EX28DRAFT_4507 -0.7 -1.6 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_1987 -0.7 -2.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3423 -0.7 -1.0 Soluble cytochrome b562 compare
EX28DRAFT_4327 -0.7 -1.7 transcriptional regulator, IclR family compare
EX28DRAFT_0757 -0.7 -1.9 septum site-determining protein MinD compare
EX28DRAFT_0726 -0.7 -1.8 C-terminal peptidase (prc) compare
EX28DRAFT_0291 -0.7 -1.9 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_1414 -0.7 -0.6 phenylacetate degradation probable enoyl-CoA hydratase paaB compare
EX28DRAFT_3875 -0.7 -5.1 Glycosyltransferases involved in cell wall biogenesis compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in in planta experiments

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours across organisms