Experiment set1IT013 for Variovorax sp. OAS795

Compare to:

Sodium Fumarate dibasic carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS16595 -7.0 -6.0 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS20615 -6.7 -8.6 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS06575 -6.5 -6.4 trehalose-phosphatase compare
ABID97_RS23225 -6.5 -12.4 glutamate synthase-related protein compare
ABID97_RS15380 -6.1 -11.8 nitrite/sulfite reductase compare
ABID97_RS16600 -6.0 -8.2 CysB family HTH-type transcriptional regulator compare
ABID97_RS15375 -5.5 -5.5 DUF934 domain-containing protein compare
ABID97_RS01565 -5.1 -10.5 DNA starvation/stationary phase protection protein compare
ABID97_RS05260 -4.8 -1.8 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS09180 -4.7 -3.2 DNA polymerase I compare
ABID97_RS23230 -4.6 -13.1 transposase compare
ABID97_RS07405 -4.4 -11.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS10885 -4.4 -7.3 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS08425 -4.3 -5.1 tryptophan synthase subunit alpha compare
ABID97_RS24920 -4.3 -2.8 Holliday junction branch migration protein RuvA compare
ABID97_RS15365 -4.3 -7.6 sulfate adenylyltransferase subunit CysD compare
ABID97_RS25015 -4.2 -2.9 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS05250 -4.2 -8.5 anthranilate synthase component I compare
ABID97_RS15370 -4.0 -13.4 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS06345 -4.0 -2.7 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS13990 -3.9 -3.8 amino acid aminotransferase compare
ABID97_RS14160 -3.7 -8.6 cell division protein ZapE compare
ABID97_RS02600 -3.7 -3.6 homoserine O-acetyltransferase compare
ABID97_RS07500 -3.6 -2.5 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS23220 -3.6 -1.7 glutamate synthase subunit beta compare
ABID97_RS23455 -3.5 -2.4 hypothetical protein compare
ABID97_RS05275 -3.5 -2.4 anthranilate phosphoribosyltransferase compare
ABID97_RS13860 -3.4 -8.9 hypothetical protein compare
ABID97_RS07000 -3.4 -11.7 threonine ammonia-lyase, biosynthetic compare
ABID97_RS14095 -3.3 -11.8 PAS domain S-box protein compare
ABID97_RS14090 -3.3 -1.7 response regulator transcription factor compare
ABID97_RS07430 -3.3 -11.9 pantoate--beta-alanine ligase compare
ABID97_RS15665 -3.2 -10.0 [protein-PII] uridylyltransferase compare
ABID97_RS16535 -3.2 -9.6 arginine/lysine/ornithine decarboxylase compare
ABID97_RS03680 -3.1 -7.4 lysophospholipid transporter LplT compare
ABID97_RS03805 -3.1 -1.6 ATP-binding protein compare
ABID97_RS15360 -3.1 -7.1 GTP-binding protein compare
ABID97_RS23450 -3.0 -4.1 MBOAT family protein compare
ABID97_RS12180 -3.0 -2.9 hypothetical protein compare
ABID97_RS03800 -3.0 -2.0 O-antigen ligase family protein compare
ABID97_RS02510 -2.9 -20.8 NADP-dependent malic enzyme compare
ABID97_RS21150 -2.8 -10.8 FAD-dependent oxidoreductase compare
ABID97_RS05280 -2.8 -1.9 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS03910 -2.8 -1.9 orotate phosphoribosyltransferase compare
ABID97_RS06365 -2.7 -2.2 TlpA disulfide reductase family protein compare
ABID97_RS05765 -2.7 -1.9 UDP-glucose 4-epimerase GalE compare
ABID97_RS06450 -2.7 -1.8 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS16470 -2.7 -1.8 translational GTPase TypA compare
ABID97_RS26600 -2.7 -4.4 ATP-binding protein compare
ABID97_RS04480 -2.7 -2.5 magnesium/cobalt transporter CorA compare
ABID97_RS05365 -2.6 -4.7 DUF4390 domain-containing protein compare
ABID97_RS06460 -2.6 -1.8 sigma 54-interacting transcriptional regulator compare
ABID97_RS05750 -2.6 -2.5 glycosyltransferase compare
ABID97_RS05370 -2.6 -5.7 ATP-binding protein compare
ABID97_RS04500 -2.5 -1.7 HPr(Ser) kinase/phosphatase compare
ABID97_RS15465 -2.5 -10.9 sulfate ABC transporter substrate-binding protein compare
ABID97_RS17850 -2.5 -1.2 tetratricopeptide repeat protein compare
ABID97_RS23425 -2.5 -2.1 tRNA-Pro compare
ABID97_RS10295 -2.4 -2.0 winged helix-turn-helix transcriptional regulator compare
ABID97_RS26605 -2.3 -2.3 sigma-54 dependent transcriptional regulator compare
ABID97_RS17635 -2.3 -4.5 presqualene diphosphate synthase HpnD compare
ABID97_RS00255 -2.3 -13.2 type IV pilus twitching motility protein PilT compare
ABID97_RS05755 -2.2 -3.0 glycosyltransferase compare
ABID97_RS07415 -2.2 -11.2 quinolinate synthase NadA compare
ABID97_RS06520 -2.2 -1.5 SAM-dependent methyltransferase compare
ABID97_RS28990 -2.2 -7.2 aspartate 1-decarboxylase compare
ABID97_RS26535 -2.2 -3.4 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS17590 -2.2 -11.0 endopeptidase La compare
ABID97_RS04765 -2.2 -2.0 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS08710 -2.1 -7.4 polynucleotide adenylyltransferase PcnB compare
ABID97_RS07435 -2.1 -7.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS07775 -2.1 -3.6 phosphoribosylglycinamide formyltransferase compare
ABID97_RS08445 -2.1 -10.4 FimV/HubP family polar landmark protein compare
ABID97_RS08480 -2.1 -1.4 citrate synthase compare
ABID97_RS23915 -2.1 -4.2 heme o synthase compare
ABID97_RS07440 -2.1 -10.1 L-aspartate oxidase compare
ABID97_RS05740 -2.1 -4.1 glycosyltransferase family A protein compare
ABID97_RS07410 -2.1 -7.0 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS05670 -2.1 -1.4 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS09595 -2.0 -1.9 Arc family DNA-binding protein compare
ABID97_RS20940 -1.9 -1.9 CBS domain-containing protein compare
ABID97_RS24370 -1.9 -3.9 DUF1841 family protein compare
ABID97_RS15495 -1.9 -3.2 aliphatic sulfonate ABC transporter permease SsuC compare
ABID97_RS01650 -1.9 -1.3 orotidine-5'-phosphate decarboxylase compare
ABID97_RS06160 -1.8 -7.4 GTP-binding protein compare
ABID97_RS20610 -1.8 -6.1 DNA-binding protein YbiB compare
ABID97_RS24170 -1.8 -6.2 ATP-binding protein compare
ABID97_RS28600 -1.8 -1.1 aspartate aminotransferase family protein compare
ABID97_RS20095 -1.8 -2.3 DNA topoisomerase IV subunit B compare
ABID97_RS02110 -1.8 -11.9 type IV pilus modification protein PilV compare
ABID97_RS15470 -1.8 -3.2 NADPH-dependent FMN reductase compare
ABID97_RS09935 -1.8 -7.9 hypothetical protein compare
ABID97_RS02115 -1.8 -9.2 PilW family protein compare
ABID97_RS25690 -1.7 -1.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
ABID97_RS25895 -1.7 -1.8 ABC transporter permease compare
ABID97_RS17050 -1.7 -2.1 RlmE family RNA methyltransferase compare
ABID97_RS26530 -1.7 -6.7 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS23435 -1.7 -11.0 type II secretion system F family protein compare
ABID97_RS16050 -1.7 -1.7 isochorismatase family cysteine hydrolase compare
ABID97_RS23440 -1.7 -9.1 A24 family peptidase compare
ABID97_RS19955 -1.7 -1.6 glycerol-3-phosphate dehydrogenase compare
ABID97_RS15995 -1.7 -6.4 PilZ domain-containing protein compare
ABID97_RS04760 -1.7 -1.6 SPOR domain-containing protein compare
ABID97_RS14625 -1.7 -5.2 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS08435 -1.7 -2.3 phosphoribosylanthranilate isomerase compare
ABID97_RS02120 -1.6 -8.6 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS02125 -1.6 -13.0 PilC/PilY family type IV pilus protein compare
ABID97_RS23430 -1.6 -10.4 type IV-A pilus assembly ATPase PilB compare
ABID97_RS03915 -1.6 -5.9 DUF4124 domain-containing protein compare
ABID97_RS12970 -1.6 -2.4 pentapeptide repeat-containing protein compare
ABID97_RS26540 -1.6 -4.7 dihydrolipoyl dehydrogenase compare
ABID97_RS27450 -1.6 -1.1 biotin-independent malonate decarboxylase subunit gamma compare
ABID97_RS15480 -1.6 -7.2 sulfonate ABC transporter substrate-binding protein compare
ABID97_RS16690 -1.6 -4.9 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS02135 -1.6 -6.1 GspH/FimT family pseudopilin compare
ABID97_RS12140 -1.6 -6.0 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS04890 -1.6 -5.2 cation:proton antiporter compare
ABID97_RS07610 -1.6 -1.1 response regulator transcription factor compare
ABID97_RS06415 -1.5 -8.9 sigma-54 dependent transcriptional regulator compare
ABID97_RS19375 -1.5 -4.0 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
ABID97_RS13865 -1.5 -4.0 hypothetical protein compare
ABID97_RS26550 -1.5 -2.0 NADP-dependent malic enzyme compare
ABID97_RS20425 -1.5 -3.3 DUF2818 family protein compare
ABID97_RS10405 -1.5 -1.4 efflux transporter outer membrane subunit compare
ABID97_RS15490 -1.5 -7.4 FMNH2-dependent alkanesulfonate monooxygenase compare
ABID97_RS19220 -1.5 -1.6 DNA polymerase Y family protein compare
ABID97_RS02460 -1.5 -9.6 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS02455 -1.4 -3.9 nucleotidyltransferase family protein compare
ABID97_RS08430 -1.4 -1.9 tryptophan synthase subunit beta compare
ABID97_RS08220 -1.4 -8.4 phosphoenolpyruvate carboxylase compare
ABID97_RS17895 -1.4 -5.3 transcriptional regulator NrdR compare
ABID97_RS02130 -1.4 -8.6 type IV pilin protein compare
ABID97_RS02140 -1.4 -7.8 sugar transferase compare
ABID97_RS24705 -1.4 -4.7 response regulator compare
ABID97_RS19550 -1.4 -1.3 phosphatase PAP2 family protein compare
ABID97_RS14105 -1.4 -1.9 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS17970 -1.4 -5.4 protein TolQ compare
ABID97_RS04505 -1.4 -2.2 ferric iron uptake transcriptional regulator compare
ABID97_RS19065 -1.4 -5.1 GntR family transcriptional regulator compare
ABID97_RS25525 -1.3 -3.4 LacI family DNA-binding transcriptional regulator compare
ABID97_RS16785 -1.3 -2.4 transporter compare
ABID97_RS10720 -1.3 -3.4 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
ABID97_RS01840 -1.3 -7.7 DUF1631 family protein compare
ABID97_RS25405 -1.3 -7.6 16S ribosomal RNA compare
ABID97_RS24045 -1.3 -2.2 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS06175 -1.3 -8.8 STAS domain-containing protein compare
ABID97_RS18205 -1.3 -1.9 XRE family transcriptional regulator compare
ABID97_RS16580 -1.3 -3.0 leucyl aminopeptidase compare
ABID97_RS28945 -1.3 -1.1 tripartite tricarboxylate transporter TctB family protein compare
ABID97_RS02145 -1.3 -4.8 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS01825 -1.3 -7.8 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS06315 -1.3 -8.3 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS13245 -1.3 -1.1 XRE family transcriptional regulator compare
ABID97_RS14100 -1.3 -7.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS16695 -1.3 -7.8 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS02605 -1.2 -7.6 TMEM165/GDT1 family protein compare
ABID97_RS03110 -1.2 -5.4 helix-turn-helix transcriptional regulator compare
ABID97_RS22705 -1.2 -5.6 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS18820 -1.2 -1.0 PrpF domain-containing protein compare
ABID97_RS23650 -1.2 -8.8 serine/threonine-protein kinase compare
ABID97_RS20265 -1.2 -2.4 site-specific tyrosine recombinase XerD compare
ABID97_RS01105 -1.2 -1.5 AMP-binding protein compare
ABID97_RS06390 -1.2 -2.3 carbohydrate kinase family protein compare
ABID97_RS29015 -1.2 -1.1 transcriptional regulator GcvA compare
ABID97_RS08775 -1.2 -1.2 ribosome small subunit-dependent GTPase A compare
ABID97_RS19380 -1.2 -3.1 2-methylcitrate synthase compare
ABID97_RS13450 -1.2 -1.6 TetR/AcrR family transcriptional regulator compare
ABID97_RS14200 -1.1 -4.1 pseudouridine synthase compare
ABID97_RS08350 -1.1 -7.7 translation elongation factor 4 compare
ABID97_RS23280 -1.1 -3.6 PilN domain-containing protein compare
ABID97_RS23270 -1.1 -4.7 pilus assembly protein PilP compare
ABID97_RS19340 -1.1 -1.6 DUF3348 domain-containing protein compare
ABID97_RS11290 -1.1 -0.8 DNA repair protein RadC compare
ABID97_RS10695 -1.1 -5.0 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS04885 -1.1 -7.8 YbdK family carboxylate-amine ligase compare
ABID97_RS21945 -1.1 -2.7 hemolysin family protein compare
ABID97_RS17200 -1.1 -8.6 ribonuclease R compare
ABID97_RS06095 -1.1 -6.5 MBL fold metallo-hydrolase compare
ABID97_RS12575 -1.1 -1.2 ATP-grasp domain-containing protein compare
ABID97_RS08365 -1.1 -2.1 ribonuclease III compare
ABID97_RS14890 -1.1 -3.1 acetolactate synthase small subunit compare
ABID97_RS20020 -1.1 -1.8 LacI family DNA-binding transcriptional regulator compare
ABID97_RS25345 -1.1 -4.8 transporter associated domain-containing protein compare
ABID97_RS16920 -1.0 -5.8 NADP-dependent isocitrate dehydrogenase compare
ABID97_RS01755 -1.0 -5.1 pyruvate kinase compare
ABID97_RS15500 -1.0 -4.0 aliphatic sulfonate ABC transporter substrate-binding protein compare
ABID97_RS23380 -1.0 -6.9 lytic transglycosylase domain-containing protein compare
ABID97_RS23265 -1.0 -6.2 type IV pilus secretin PilQ compare
ABID97_RS09940 -1.0 -2.6 nitrogen regulation protein NR(II) compare
ABID97_RS08360 -1.0 -3.8 DUF4845 domain-containing protein compare
ABID97_RS08440 -1.0 -3.5 tRNA pseudouridine(38-40) synthase TruA compare
ABID97_RS07850 -1.0 -5.0 ABC transporter ATP-binding protein compare
ABID97_RS02200 -1.0 -8.8 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS02210 -1.0 -5.0 pilin compare
ABID97_RS14700 -1.0 -1.8 recombination mediator RecR compare
ABID97_RS17640 -1.0 -2.0 hydroxysqualene dehydroxylase HpnE compare
ABID97_RS15215 -1.0 -0.9 lysozyme compare
ABID97_RS23485 -1.0 -1.6 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ compare
ABID97_RS23275 -1.0 -4.7 type 4a pilus biogenesis protein PilO compare
ABID97_RS09945 -1.0 -3.8 nitrogen regulation protein NR(I) compare


Specific Phenotypes

None in this experiment

For Variovorax sp. OAS795 in carbon source experiments

For carbon source Sodium Fumarate dibasic across organisms