Experiment set1IT013 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_0331 -6.4 -1.8 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0324 -6.4 -2.1 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0038 -6.2 -1.8 K+ transport systems, NAD-binding component compare
EX28DRAFT_0092 -5.8 -1.9 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_0523 -5.7 -0.9 Glycosyltransferase like family 2 compare
EX28DRAFT_3879 -5.6 -3.2 Glycosyltransferase compare
EX28DRAFT_4350 -5.6 -0.9 nitrogen regulation protein NR(I) compare
EX28DRAFT_3708 -5.4 -0.9 Transcriptional regulators compare
EX28DRAFT_0697 -5.4 -2.1 ABC-type Mn2+/Zn2+ transport systems, permease components compare
EX28DRAFT_3476 -5.4 -0.9 hypothetical protein compare
EX28DRAFT_1620 -5.3 -0.9 hypothetical protein compare
EX28DRAFT_1573 -5.3 -0.9 hypothetical protein compare
EX28DRAFT_1307 -5.1 -1.4 hypothetical protein compare
EX28DRAFT_4156 -5.1 -1.4 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0620 -5.0 -1.4 Flagellar protein FliT compare
EX28DRAFT_1396 -4.9 -0.8 Amidases related to nicotinamidase compare
EX28DRAFT_1293 -4.8 -0.8 hypothetical protein compare
EX28DRAFT_3687 -4.6 -0.8 D-alanine--D-alanine ligase compare
EX28DRAFT_0876 -4.6 -0.7 hypothetical protein compare
EX28DRAFT_1986 -4.5 -1.0 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_0286 -4.5 -1.7 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_3643 -4.5 -3.3 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_4184 -4.4 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2045 -4.3 -0.7 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_2945 -4.3 -1.4 tyrosine recombinase XerD compare
EX28DRAFT_3089 -4.3 -0.7 Transcriptional regulators compare
EX28DRAFT_1844 -4.2 -1.0 pseudouridine synthase, RluA family compare
EX28DRAFT_0769 -4.0 -0.9 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_0921 -3.9 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3611 -3.9 -0.6 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_4461 -3.8 -3.4 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_0693 -3.8 -0.9 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_4318 -3.8 -2.8 Glucose-6-phosphate isomerase compare
EX28DRAFT_3079 -3.7 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4271 -3.6 -0.6 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_4297 -3.4 -0.8 cell division ATP-binding protein FtsE compare
EX28DRAFT_0712 -3.4 -0.8 DNA polymerase III, theta subunit compare
EX28DRAFT_4018 -3.3 -2.5 Flavodoxins compare
EX28DRAFT_1719 -3.3 -0.7 integration host factor, alpha subunit compare
EX28DRAFT_2472 -3.3 -0.5 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_3337 -3.3 -1.6 Protein affecting phage T7 exclusion by the F plasmid compare
EX28DRAFT_3368 -3.2 -0.7 tRNA dimethylallyltransferase compare
EX28DRAFT_0517 -3.1 -3.0 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
EX28DRAFT_1402 -3.0 -1.6 Glyoxalase-like domain compare
EX28DRAFT_0526 -2.9 -2.2 hypothetical protein compare
EX28DRAFT_1328 -2.8 -0.6 Putative excisionase (DUF1233) compare
EX28DRAFT_4003 -2.8 -1.1 phosphate ABC transporter, permease protein PstC compare
EX28DRAFT_2252 -2.7 -2.1 TolA protein compare
EX28DRAFT_4505 -2.7 -2.0 transcription elongation factor/antiterminator RfaH compare
EX28DRAFT_4544 -2.6 -1.4 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_0046 -2.6 -2.6 shikimate dehydrogenase compare
EX28DRAFT_4158 -2.6 -2.3 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_0531 -2.6 -5.6 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0313 -2.5 -4.2 acetate kinase compare
EX28DRAFT_0545 -2.5 -2.1 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_3401 -2.5 -1.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_2646 -2.4 -1.3 HNH endonuclease compare
EX28DRAFT_0972 -2.4 -1.6 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_2046 -2.4 -1.6 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_0081 -2.4 -2.8 DNA replication and repair protein RecO compare
EX28DRAFT_2250 -2.3 -2.2 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0732 -2.3 -2.2 YebO-like protein compare
EX28DRAFT_2513 -2.3 -1.7 hypothetical protein compare
EX28DRAFT_0521 -2.2 -6.8 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2531 -2.2 -2.8 endopeptidase La compare
EX28DRAFT_2033 -2.2 -1.6 pyruvate formate-lyase 1-activating enzyme compare
EX28DRAFT_1650 -2.1 -1.5 ribonuclease T compare
EX28DRAFT_4191 -2.1 -1.9 small GTP-binding protein domain compare
EX28DRAFT_2259 -2.1 -1.7 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_0125 -2.1 -0.7 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_4061 -2.0 -2.9 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_3073 -2.0 -3.7 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_2205 -2.0 -2.1 Molybdopterin converting factor, large subunit compare
EX28DRAFT_3434 -1.9 -1.8 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_3372 -1.9 -2.5 HflC protein compare
EX28DRAFT_4459 -1.9 -5.5 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_3297 -1.9 -2.7 ribonuclease, Rne/Rng family compare
EX28DRAFT_4324 -1.9 -2.5 probable addiction module antidote protein compare
EX28DRAFT_3212 -1.9 -2.9 Lipoprotein NlpI, contains TPR repeats compare
EX28DRAFT_0970 -1.9 -3.5 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_3728 -1.9 -0.9 L-aspartate 1-decarboxylase (EC 4.1.1.11) compare
EX28DRAFT_0321 -1.9 -0.7 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_4419 -1.9 -1.2 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_2371 -1.8 -1.3 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
EX28DRAFT_0132 -1.8 -2.7 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_3900 -1.8 -1.3 SpoU rRNA Methylase family/SpoU, rRNA methylase, C-terminal compare
EX28DRAFT_3002 -1.8 -1.2 triphosphoribosyl-dephospho-CoA synthase CitG compare
EX28DRAFT_0096 -1.8 -2.8 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
EX28DRAFT_3645 -1.7 -1.9 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_0291 -1.7 -2.6 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_4507 -1.7 -2.9 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_1692 -1.7 -0.8 Biofilm development protein YmgB/AriR compare
EX28DRAFT_1655 -1.7 -3.0 Transcriptional regulators compare
EX28DRAFT_1367 -1.7 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2148 -1.7 -3.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0111 -1.7 -1.0 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0272 -1.6 -0.8 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0818 -1.6 -1.7 hypothetical protein compare
EX28DRAFT_4341 -1.6 -2.3 Protein-disulfide isomerase compare
EX28DRAFT_1430 -1.6 -1.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1273 -1.6 -1.7 hypothetical protein compare
EX28DRAFT_1477 -1.6 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3597 -1.6 -2.0 DNA repair protein RadA compare
EX28DRAFT_3719 -1.6 -2.7 Bacterial chaperone lipoprotein (PulS_OutS) compare
EX28DRAFT_0328 -1.6 -1.0 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_4386 -1.6 -2.0 Signal transduction histidine kinase compare
EX28DRAFT_3045 -1.6 -1.4 tonB-system energizer ExbB compare
EX28DRAFT_2262 -1.5 -2.1 Transcriptional regulators compare
EX28DRAFT_2532 -1.5 -2.1 RNA compare
EX28DRAFT_3775 -1.5 -4.6 Lactoylglutathione lyase and related lyases compare
EX28DRAFT_0069 -1.5 -0.9 Superfamily II DNA and RNA helicases compare
EX28DRAFT_3345 -1.5 -1.1 Predicted small secreted protein compare
EX28DRAFT_2267 -1.5 -2.4 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_4478 -1.5 -2.5 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_3849 -1.5 -1.0 PTS system, mannitol-specific IIC component compare
EX28DRAFT_0166 -1.5 -4.6 polyphosphate kinase 1 compare
EX28DRAFT_0250 -1.5 -1.9 PAAR motif compare
EX28DRAFT_1527 -1.5 -1.1 hypothetical protein compare
EX28DRAFT_0084 -1.4 -1.5 4Fe-4S dicluster domain compare
EX28DRAFT_2109 -1.4 -1.8 Reverse transcriptase (RNA-dependent DNA polymerase) compare
EX28DRAFT_3205 -1.4 -1.7 Predicted acetyltransferase compare
EX28DRAFT_4463 -1.4 -2.7 Teichoic acid biosynthesis proteins compare
EX28DRAFT_2240 -1.4 -1.7 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_3278 -1.4 -1.3 Glutathione S-transferase compare
EX28DRAFT_0274 -1.4 -3.5 protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific compare
EX28DRAFT_4153 -1.4 -1.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_3883 -1.4 -2.1 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_0061 -1.4 -1.0 Predicted periplasmic lipoprotein compare
EX28DRAFT_2213 -1.4 -0.9 dethiobiotin synthase compare
EX28DRAFT_2629 -1.4 -1.5 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_1877 -1.4 -1.4 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
EX28DRAFT_3282 -1.4 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4135 -1.3 -1.2 hypothetical protein compare
EX28DRAFT_0519 -1.3 -5.9 Predicted nucleoside-diphosphate sugar epimerases compare
EX28DRAFT_0332 -1.3 -3.1 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_3461 -1.3 -2.3 ornithine carbamoyltransferase compare
EX28DRAFT_2884 -1.3 -1.8 RNA compare
EX28DRAFT_0908 -1.3 -0.6 phage tail protein, P2 protein I family compare
EX28DRAFT_0726 -1.3 -0.8 C-terminal peptidase (prc) compare
EX28DRAFT_2773 -1.3 -1.5 RNA compare
EX28DRAFT_0292 -1.3 -1.1 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_3634 -1.3 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
EX28DRAFT_2938 -1.3 -1.0 tRNA compare
EX28DRAFT_0322 -1.3 -3.7 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_2974 -1.3 -3.1 transketolase, bacterial and yeast compare
EX28DRAFT_3264 -1.3 -3.4 PAS domain S-box compare
EX28DRAFT_2485 -1.3 -2.2 DNA replication and repair protein RecR compare
EX28DRAFT_1087 -1.3 -3.0 CcdB protein compare
EX28DRAFT_0706 -1.3 -1.2 Entner-Doudoroff aldolase compare
EX28DRAFT_2128 -1.3 -2.2 Glutathione S-transferase compare
EX28DRAFT_0758 -1.3 -2.0 septum site-determining protein MinC compare
EX28DRAFT_1129 -1.3 -1.2 hypothetical protein compare
EX28DRAFT_1313 -1.2 -1.2 Cro compare
EX28DRAFT_2255 -1.2 -1.5 tol-pal system-associated acyl-CoA thioesterase compare
EX28DRAFT_2225 -1.2 -3.2 3-carboxymuconate cyclase compare
EX28DRAFT_0327 -1.2 -2.5 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_3127 -1.2 -1.1 DinI-like family compare
EX28DRAFT_1808 -1.2 -3.7 Predicted signal transduction protein containing EAL and modified HD-GYP domains compare
EX28DRAFT_2724 -1.2 -0.9 RNA compare
EX28DRAFT_3137 -1.2 -0.7 Predicted transcriptional regulators compare
EX28DRAFT_2061 -1.2 -2.0 Predicted membrane protein compare
EX28DRAFT_2787 -1.2 -1.1 ABC-type metal ion transport system, periplasmic component/surface adhesin compare
EX28DRAFT_1586 -1.2 -1.3 hypothetical protein compare
EX28DRAFT_3492 -1.2 -1.6 Lactoylglutathione lyase and related lyases compare
EX28DRAFT_0199 -1.2 -0.9 coproporphyrinogen oxidase (EC 1.3.3.3) compare
EX28DRAFT_0918 -1.2 -0.5 Ogr/Delta-like zinc finger compare
EX28DRAFT_2160 -1.2 -1.2 P pilus assembly protein, pilin FimA compare
EX28DRAFT_2258 -1.2 -0.8 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_2131 -1.2 -2.3 ribosomal protein S12 methylthiotransferase RimO compare
EX28DRAFT_4515 -1.2 -0.7 hypothetical protein compare
EX28DRAFT_3698 -1.2 -0.9 guanosine monophosphate reductase, eukaryotic compare
EX28DRAFT_2162 -1.2 -1.2 hypothetical protein compare
EX28DRAFT_3874 -1.1 -5.3 ADP-heptose:LPS heptosyltransferase compare
EX28DRAFT_0468 -1.1 -1.0 hydroxyethylthiazole kinase compare
EX28DRAFT_2142 -1.1 -1.6 HAD-superfamily hydrolase, subfamily IIB compare
EX28DRAFT_0698 -1.1 -2.5 ABC-type Mn/Zn transport systems, ATPase component compare
EX28DRAFT_1439 -1.1 -1.4 Uncharacterized conserved protein compare
EX28DRAFT_1335 -1.1 -1.0 Putative threonine efflux protein compare
EX28DRAFT_3438 -1.1 -4.0 alpha,alpha-phosphotrehalase compare
EX28DRAFT_0043 -1.1 -1.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2608 -1.1 -2.7 Amino acid transporters compare
EX28DRAFT_4441 -1.1 -2.1 acetolactate synthase, small subunit (EC 2.2.1.6) compare
EX28DRAFT_0076 -1.1 -1.6 elongation factor 4 compare
EX28DRAFT_2288 -1.1 -0.9 negative regulator of replication initiation SeqA compare
EX28DRAFT_1341 -1.1 -1.2 FOG: EAL domain compare
EX28DRAFT_1342 -1.1 -0.7 hypothetical protein compare
EX28DRAFT_1175 -1.1 -2.6 Domain of unknown function (DUF4354) compare
EX28DRAFT_1530 -1.1 -0.7 hypothetical protein compare
EX28DRAFT_1508 -1.1 -1.0 Membrane transporters of cations and cationic drugs compare
EX28DRAFT_2298 -1.1 -4.3 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_0600 -1.1 -1.0 RNA compare
EX28DRAFT_4347 -1.1 -0.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2027 -1.1 -1.4 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_0656 -1.1 -2.8 alpha,alpha-trehalose-phosphate synthase [UDP-forming] compare
EX28DRAFT_1700 -1.1 -0.7 hypothetical protein compare
EX28DRAFT_0091 -1.1 -0.6 hypothetical protein compare
EX28DRAFT_2450 -1.1 -1.9 Uncharacterized conserved protein compare
EX28DRAFT_0686 -1.1 -1.3 tRNA (mo5U34)-methyltransferase compare
EX28DRAFT_4482 -1.1 -1.1 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) compare
EX28DRAFT_0145 -1.1 -0.9 Protein of unknown function (DUF1641) compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in in planta experiments

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours across organisms