Experiment set1IT012 for Rhizobium sp. OAE497

Compare to:

D-Raffinose pentahydrate carbon source

200 most important genes:

  gene name fitness t score description  
ABIE40_RS19355 -6.8 -4.7 thioredoxin compare
ABIE40_RS00245 -6.4 -7.7 prephenate dehydratase compare
ABIE40_RS19415 -6.4 -11.5 phosphoenolpyruvate carboxykinase compare
ABIE40_RS18380 -6.3 -8.7 3-isopropylmalate dehydratase large subunit compare
ABIE40_RS02340 -6.2 -10.4 O-succinylhomoserine sulfhydrylase compare
ABIE40_RS13330 -6.1 -6.0 2-isopropylmalate synthase compare
ABIE40_RS19050 -6.0 -9.2 3-isopropylmalate dehydrogenase compare
ABIE40_RS17525 -6.0 -3.4 lipoprotein compare
ABIE40_RS18590 -6.0 -12.8 homoserine O-succinyltransferase compare
ABIE40_RS11950 -5.9 -7.0 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABIE40_RS18775 -5.8 -7.0 pyruvate carboxylase compare
ABIE40_RS19040 -5.8 -5.6 3-isopropylmalate dehydratase small subunit compare
ABIE40_RS16645 -5.7 -18.4 LacI family DNA-binding transcriptional regulator compare
ABIE40_RS09095 -5.7 -3.9 PAS domain-containing sensor histidine kinase compare
ABIE40_RS06555 -5.6 -3.2 phosphoribosylglycinamide formyltransferase compare
ABIE40_RS09545 -5.4 -3.5 anthranilate phosphoribosyltransferase compare
ABIE40_RS08635 -5.4 -5.2 class I poly(R)-hydroxyalkanoic acid synthase compare
ABIE40_RS17530 -5.3 -3.7 diaminopimelate decarboxylase compare
ABIE40_RS16320 -5.2 -3.6 histidinol-phosphatase compare
ABIE40_RS03665 -5.2 -3.6 ATP phosphoribosyltransferase compare
ABIE40_RS02725 -5.1 -3.5 histidinol dehydrogenase compare
ABIE40_RS10725 -5.1 -3.5 adenosylcobinamide-GDP ribazoletransferase compare
ABIE40_RS01970 -5.1 -3.5 acetylglutamate kinase compare
ABIE40_RS06730 -5.1 -4.9 riboflavin synthase compare
ABIE40_RS03660 -5.0 -3.5 ATP phosphoribosyltransferase regulatory subunit compare
ABIE40_RS20460 -5.0 -3.5 precorrin-3B synthase compare
ABIE40_RS02325 -5.0 -3.5 ornithine carbamoyltransferase compare
ABIE40_RS19435 -5.0 -2.8 phosphoribosyl-ATP diphosphatase compare
ABIE40_RS16655 -5.0 -5.9 creatininase family protein compare
ABIE40_RS10720 -4.9 -3.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
ABIE40_RS11105 -4.8 -3.3 cobyrinate a,c-diamide synthase compare
ABIE40_RS09150 -4.8 -17.9 nitrite/sulfite reductase compare
ABIE40_RS19460 -4.8 -3.3 imidazoleglycerol-phosphate dehydratase HisB compare
ABIE40_RS20450 -4.8 -3.3 precorrin-2 C(20)-methyltransferase compare
ABIE40_RS11175 -4.8 -3.3 cobyric acid synthase compare
ABIE40_RS06930 -4.7 -3.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
ABIE40_RS09725 -4.7 -3.2 phosphoribosyl-AMP cyclohydrolase compare
ABIE40_RS09660 -4.7 -15.6 AI-2E family transporter compare
ABIE40_RS06560 -4.7 -3.2 phosphoribosylformylglycinamidine cyclo-ligase compare
ABIE40_RS10180 -4.6 -3.2 phosphoribosylformylglycinamidine synthase subunit PurL compare
ABIE40_RS09155 -4.6 -6.3 DUF934 domain-containing protein compare
ABIE40_RS11150 -4.6 -8.3 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABIE40_RS19440 -4.6 -3.2 imidazole glycerol phosphate synthase subunit HisF compare
ABIE40_RS13410 -4.6 -3.2 anthranilate synthase compare
ABIE40_RS19330 -4.6 -3.2 phosphoribosylanthranilate isomerase compare
ABIE40_RS11165 -4.6 -3.0 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
ABIE40_RS06270 -4.5 -5.4 amidophosphoribosyltransferase compare
ABIE40_RS17650 -4.5 -3.1 cobaltochelatase subunit CobS compare
ABIE40_RS11495 -4.5 -3.1 acetolactate synthase 3 large subunit compare
ABIE40_RS16070 -4.5 -3.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
ABIE40_RS20440 -4.5 -3.1 cobalt-precorrin-6A reductase compare
ABIE40_RS08970 -4.4 -7.4 citrate synthase compare
ABIE40_RS20435 -4.4 -3.0 precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE compare
ABIE40_RS11095 -4.3 -3.0 adenosylcobinamide-phosphate synthase CbiB compare
ABIE40_RS12925 -4.3 -11.8 pyridoxal phosphate-dependent aminotransferase compare
ABIE40_RS02235 -4.3 -15.4 altronate dehydratase family protein compare
ABIE40_RS09360 -4.3 -4.1 excinuclease ABC subunit UvrA compare
ABIE40_RS17595 -4.3 -2.9 histidinol-phosphate transaminase compare
ABIE40_RS19450 -4.2 -2.9 imidazole glycerol phosphate synthase subunit HisH compare
ABIE40_RS11155 -4.2 -4.1 cobaltochelatase subunit CobN compare
ABIE40_RS20455 -4.1 -2.2 precorrin-8X methylmutase compare
ABIE40_RS18925 -4.1 -6.2 glutamate-5-semialdehyde dehydrogenase compare
ABIE40_RS19130 -4.0 -2.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
ABIE40_RS20430 -4.0 -2.8 precorrin-4 C(11)-methyltransferase compare
ABIE40_RS00725 -3.9 -3.8 DNA cytosine methyltransferase compare
ABIE40_RS08005 -3.9 -2.7 dihydroxy-acid dehydratase compare
ABIE40_RS18920 -3.9 -5.7 glutamate 5-kinase compare
ABIE40_RS20465 -3.9 -2.7 precorrin-6A synthase (deacetylating) compare
ABIE40_RS03405 -3.9 -2.7 anti-sigma factor compare
ABIE40_RS12135 -3.9 -2.7 methionine synthase compare
ABIE40_RS19445 -3.8 -2.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
ABIE40_RS14990 -3.8 -13.3 glycosyltransferase family 2 protein compare
ABIE40_RS17645 -3.7 -2.6 cobaltochelatase subunit CobT compare
ABIE40_RS09140 -3.7 -10.3 siroheme synthase CysG compare
ABIE40_RS19260 -3.6 -2.4 DNA polymerase III subunit epsilon compare
ABIE40_RS01135 -3.5 -1.2 50S ribosomal protein L20 compare
ABIE40_RS05430 -3.5 -2.4 phosphoribosylamine--glycine ligase compare
ABIE40_RS18720 -3.5 -2.4 polyprenyl synthetase family protein compare
ABIE40_RS09090 -3.5 -8.9 nitrogen regulation protein NR(I) compare
ABIE40_RS14955 -3.4 -11.6 sugar transferase compare
ABIE40_RS00930 -3.4 -7.2 ABC transporter permease compare
ABIE40_RS17590 -3.4 -2.3 prephenate/arogenate dehydrogenase family protein compare
ABIE40_RS10345 -3.3 -6.3 RNA polymerase-binding protein DksA compare
ABIE40_RS10155 -3.3 -2.1 phosphoribosylformylglycinamidine synthase subunit PurQ compare
ABIE40_RS19480 -3.3 -3.2 DUF1402 family protein compare
ABIE40_RS08645 -3.3 -7.2 LL-diaminopimelate aminotransferase compare
ABIE40_RS06700 -3.3 -4.8 MarR family winged helix-turn-helix transcriptional regulator compare
ABIE40_RS12360 -3.3 -13.3 DUF5131 family protein compare
ABIE40_RS02320 -3.2 -5.8 aspartate aminotransferase family protein compare
ABIE40_RS11060 -3.2 -5.2 lipid A biosynthesis lauroyl acyltransferase compare
ABIE40_RS08425 -3.2 -3.5 iron-sulfur cluster insertion protein ErpA compare
ABIE40_RS09540 -3.2 -8.3 peptidylprolyl isomerase compare
ABIE40_RS06725 -3.1 -5.4 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD compare
ABIE40_RS20445 -3.1 -1.4 precorrin-3B C(17)-methyltransferase compare
ABIE40_RS08140 -3.1 -15.6 vitamin B12-dependent ribonucleotide reductase compare
ABIE40_RS06050 -3.0 -6.9 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABIE40_RS19385 -3.0 -7.1 adenosylhomocysteinase compare
ABIE40_RS14980 -3.0 -6.2 glycoside hydrolase family 16 protein compare
ABIE40_RS15855 -2.9 -3.1 cell division protein ZapA compare
ABIE40_RS15345 -2.9 -8.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS00580 -2.9 -3.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
ABIE40_RS18685 -2.9 -5.3 beta-ketoacyl-ACP reductase compare
ABIE40_RS08935 -2.8 -3.9 RIP metalloprotease RseP compare
ABIE40_RS27930 -2.8 -1.3 nuclear transport factor 2 family protein compare
ABIE40_RS18055 -2.8 -4.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABIE40_RS04070 -2.6 -6.5 heme o synthase compare
ABIE40_RS30895 -2.6 -1.9 cytochrome o ubiquinol oxidase subunit IV compare
ABIE40_RS00960 -2.6 -4.5 formyltetrahydrofolate deformylase compare
ABIE40_RS16570 -2.6 -3.4 tetratricopeptide repeat protein compare
ABIE40_RS04215 -2.6 -2.9 sensor domain-containing phosphodiesterase compare
ABIE40_RS19365 -2.5 -3.4 double-strand break repair protein AddB compare
ABIE40_RS04470 -2.5 -12.0 sulfate adenylyltransferase subunit CysD compare
ABIE40_RS20025 -2.5 -5.6 alpha-hydroxy acid oxidase compare
ABIE40_RS11910 -2.5 -8.7 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
ABIE40_RS18880 -2.5 -11.0 UDP-glucose 4-epimerase GalE compare
ABIE40_RS00935 -2.5 -6.4 ABC transporter substrate-binding protein compare
ABIE40_RS04475 -2.4 -10.3 phosphoadenylyl-sulfate reductase compare
ABIE40_RS05995 -2.4 -9.8 MurR/RpiR family transcriptional regulator compare
ABIE40_RS04465 -2.3 -10.9 sulfate adenylyltransferase subunit CysN compare
ABIE40_RS19360 -2.3 -4.2 double-strand break repair helicase AddA compare
ABIE40_RS01765 -2.2 -6.0 [protein-PII] uridylyltransferase compare
ABIE40_RS00925 -2.2 -4.3 ABC transporter permease compare
ABIE40_RS11365 -2.2 -4.7 TetR/AcrR family transcriptional regulator C-terminal domain-containing protein compare
ABIE40_RS12860 -2.1 -1.2 Lrp/AsnC family transcriptional regulator compare
ABIE40_RS14455 -2.1 -2.7 NepR family anti-sigma factor compare
ABIE40_RS07740 -2.1 -1.9 elongation factor Tu compare
ABIE40_RS20005 -2.1 -6.8 amidohydrolase compare
ABIE40_RS05025 -2.1 -3.8 MucR family transcriptional regulator compare
ABIE40_RS14855 -2.0 -6.6 NAD-dependent epimerase compare
ABIE40_RS27110 -2.0 -3.1 helix-turn-helix transcriptional regulator compare
ABIE40_RS28815 -2.0 -4.8 GNAT family N-acetyltransferase compare
ABIE40_RS05660 -2.0 -2.2 response regulator transcription factor compare
ABIE40_RS01055 -2.0 -4.9 translation elongation factor 4 compare
ABIE40_RS16210 -2.0 -7.6 homospermidine synthase compare
ABIE40_RS12845 -2.0 -4.0 glycosyltransferase family 4 protein compare
ABIE40_RS28165 -2.0 -2.8 hypothetical protein compare
ABIE40_RS05155 -1.9 -3.0 DUF5330 domain-containing protein compare
ABIE40_RS16170 -1.9 -2.5 DUF882 domain-containing protein compare
ABIE40_RS29110 -1.9 -1.9 GFA family protein compare
ABIE40_RS11960 -1.9 -2.2 energy-dependent translational throttle protein EttA compare
ABIE40_RS14985 -1.9 -1.7 glycosyltransferase compare
ABIE40_RS06575 -1.8 -9.0 RNA degradosome polyphosphate kinase compare
ABIE40_RS27215 -1.8 -1.2 3'-5' exonuclease compare
ABIE40_RS15920 -1.8 -0.8 50S ribosomal protein L31 compare
ABIE40_RS03515 -1.8 -3.1 glutamate--cysteine ligase compare
ABIE40_RS10390 -1.8 -2.1 2Fe-2S iron-sulfur cluster-binding protein compare
ABIE40_RS30225 -1.8 -3.3 hypothetical protein compare
ABIE40_RS29515 -1.7 -2.3 hypothetical protein compare
ABIE40_RS19615 -1.7 -1.9 DUF1109 domain-containing protein compare
ABIE40_RS04060 -1.7 -8.9 cytochrome c oxidase subunit II compare
ABIE40_RS09720 -1.7 -3.2 GTP cyclohydrolase I FolE compare
ABIE40_RS03190 -1.7 -3.4 phosphogluconate dehydratase compare
ABIE40_RS02305 -1.7 -4.4 phosphate signaling complex protein PhoU compare
ABIE40_RS01930 -1.6 -1.1 succinyl-diaminopimelate desuccinylase compare
ABIE40_RS01730 -1.6 -1.3 NifU family protein compare
ABIE40_RS02345 -1.6 -2.6 2'-deoxycytidine 5'-triphosphate deaminase compare
ABIE40_RS05545 -1.6 -2.3 Dabb family protein compare
ABIE40_RS24310 -1.6 -6.1 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS02210 -1.6 -6.9 ABC transporter permease compare
ABIE40_RS11490 -1.6 -5.4 acetolactate synthase small subunit compare
ABIE40_RS30705 -1.6 -1.2 hypothetical protein compare
ABIE40_RS19245 -1.5 -3.5 Maf-like protein compare
ABIE40_RS02220 -1.5 -8.0 ABC transporter substrate-binding protein compare
ABIE40_RS13370 -1.5 -6.9 CDF family cation efflux transporter EmfA compare
ABIE40_RS09145 -1.5 -3.5 DUF2849 domain-containing protein compare
ABIE40_RS05685 -1.5 -7.8 heme lyase CcmF/NrfE family subunit compare
ABIE40_RS04065 -1.5 -7.7 cytochrome c oxidase subunit I compare
ABIE40_RS22390 -1.5 -1.1 cytochrome c compare
ABIE40_RS07105 -1.5 -2.4 DNA-binding protein HupB compare
ABIE40_RS03485 -1.5 -8.9 MAPEG family protein compare
ABIE40_RS21985 -1.4 -3.6 MarR family transcriptional regulator compare
ABIE40_RS19455 -1.4 -1.0 DUF2628 domain-containing protein compare
ABIE40_RS18300 -1.4 -5.9 DsbE family thiol:disulfide interchange protein compare
ABIE40_RS02215 -1.4 -6.3 sugar ABC transporter ATP-binding protein compare
ABIE40_RS08640 -1.4 -1.5 hypothetical protein compare
ABIE40_RS01510 -1.4 -2.1 NmrA family NAD(P)-binding protein compare
ABIE40_RS18640 -1.4 -6.1 M48 family metalloprotease compare
ABIE40_RS00490 -1.4 -6.9 DNA polymerase I compare
ABIE40_RS14850 -1.4 -5.4 UDP-glucose/GDP-mannose dehydrogenase family protein compare
ABIE40_RS22100 -1.4 -1.4 helix-turn-helix domain-containing protein compare
ABIE40_RS19395 -1.3 -1.5 PTS sugar transporter subunit IIA compare
ABIE40_RS13130 -1.3 -5.6 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABIE40_RS18290 -1.3 -7.2 heme ABC transporter permease compare
ABIE40_RS25335 -1.3 -2.0 4-oxalocrotonate tautomerase family protein compare
ABIE40_RS08695 -1.3 -2.0 hypothetical protein compare
ABIE40_RS30865 -1.3 -1.7 CheR family methyltransferase compare
ABIE40_RS22660 -1.3 -2.7 class 1b ribonucleoside-diphosphate reductase subunit alpha compare
ABIE40_RS28025 -1.3 -1.9 VOC family protein compare
ABIE40_RS08835 -1.3 -3.2 alpha/beta fold hydrolase compare
ABIE40_RS02580 -1.3 -8.8 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABIE40_RS10140 -1.3 -2.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
ABIE40_RS15890 -1.3 -5.4 fructose bisphosphate aldolase compare
ABIE40_RS03735 -1.3 -1.7 antitoxin Xre/MbcA/ParS toxin-binding domain-containing protein compare
ABIE40_RS17565 -1.2 -1.6 ABC transporter permease compare
ABIE40_RS10420 -1.2 -5.3 MCE family protein compare
ABIE40_RS23845 -1.2 -2.1 hypothetical protein compare
ABIE40_RS05665 -1.2 -2.4 HAMP domain-containing sensor histidine kinase compare
ABIE40_RS07320 -1.2 -1.2 DUF3572 domain-containing protein compare
ABIE40_RS05690 -1.2 -4.4 cytochrome c-type biogenesis protein compare
ABIE40_RS14785 -1.2 -3.9 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Raffinose pentahydrate in Rhizobium sp. OAE497

For carbon source D-Raffinose pentahydrate across organisms