Experiment set1IT010 for Pseudomonas sp. S08-1

Compare to:

Sodium acetate carbon source

200 most important genes:

  gene name fitness t score description  
OH686_13600 -6.1 -4.2 N-acetylglutamate kinase compare
OH686_13885 -5.7 -9.5 argininosuccinate lyase compare
OH686_00475 -5.5 -11.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
OH686_15195 -5.5 -9.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
OH686_15135 -5.4 -6.4 Anthranilate phosphoribosyltransferase compare
OH686_03930 -5.0 -11.2 argininosuccinate synthase compare
OH686_04445 -4.9 -14.9 Phosphoribosylanthranilate isomerase compare
OH686_12425 -4.8 -13.8 tryptophan synthase, beta subunit compare
OH686_15140 -4.7 -20.8 Indole-3-glycerol phosphate synthase compare
OH686_15125 -4.5 -21.8 anthranilate synthase component I compare
OH686_21970 -4.5 -3.1 L,D-transpeptidase compare
OH686_14575 -4.5 -8.4 Imidazoleglycerol-phosphate dehydratase compare
OH686_12430 -4.5 -14.6 tryptophan synthase, alpha subunit compare
OH686_10020 -4.4 -7.9 Shikimate kinase I compare
OH686_08470 -4.3 -19.5 Histidinol dehydrogenase compare
OH686_16305 -4.2 -7.5 Glutamate 5-kinase / RNA-binding C-terminal domain PUA compare
OH686_07585 -4.2 -5.7 3-dehydroquinate dehydratase, type II compare
OH686_11000 -4.1 -18.2 homoserine O-acetyltransferase compare
OH686_09305 -4.0 -20.8 Septum-associated rare lipoprotein A compare
OH686_19765 -4.0 -4.7 cell division topological specificity factor MinE compare
OH686_10005 -4.0 -28.5 Glutamate synthase [NADPH] large chain compare
OH686_10000 -3.9 -20.2 Glutamate synthase [NADPH] small chain compare
OH686_13590 -3.8 -2.6 Orotate phosphoribosyltransferase compare
OH686_10980 -3.7 -4.4 pyrroline-5-carboxylate reductase compare
OH686_10820 -3.7 -16.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
OH686_20870 -3.7 -4.3 Chorismate mutase I / Prephenate dehydratase compare
OH686_12485 -3.6 -5.5 Shikimate 5-dehydrogenase I alpha compare
OH686_09340 -3.6 -9.0 Gamma-glutamyl phosphate reductase compare
OH686_14645 -3.5 -10.2 Carboxyl-terminal protease compare
OH686_14590 -3.5 -11.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
OH686_14390 -3.4 -21.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
OH686_14595 -3.4 -8.4 Imidazole glycerol phosphate synthase cyclase subunit compare
OH686_14435 -3.4 -22.2 Glycosyl transferase, group 1 family protein compare
OH686_08475 -3.4 -17.1 ATP phosphoribosyltransferase compare
OH686_01780 -3.4 -5.6 L,D-transpeptidase compare
OH686_10160 -3.3 -8.0 Phosphoribosyl-AMP cyclohydrolase compare
OH686_11400 -3.3 -16.9 threonine ammonia-lyase, biosynthetic compare
OH686_14385 -3.3 -19.1 UDP-N-acetylglucosamine 2-epimerase compare
OH686_09445 -3.3 -15.9 ATP phosphoribosyltransferase, regulatory subunit compare
OH686_04415 -3.3 -14.3 O-succinylhomoserine sulfhydrylase compare
OH686_04470 -3.3 -18.7 3-isopropylmalate dehydrogenase compare
OH686_04475 -3.3 -9.1 3-isopropylmalate dehydratase small subunit compare
OH686_04480 -3.2 -13.2 3-isopropylmalate dehydratase large subunit compare
OH686_17100 -3.2 -2.2 Cell division-associated, ATP-dependent zinc metalloprotease FtsH compare
OH686_21330 -3.2 -3.5 aspartate kinase, monofunctional class compare
OH686_01625 -3.2 -3.7 Nonspecific porin and structural outer membrane protein OprF compare
OH686_11280 -3.1 -6.7 D-3-phosphoglycerate dehydrogenase compare
OH686_10405 -3.1 -16.3 malate synthase G compare
OH686_04115 -3.1 -2.9 hypothetical protein compare
OH686_14100 -3.1 -17.9 dihydroxy-acid dehydratase compare
OH686_08115 -3.1 -12.7 ketol-acid reductoisomerase compare
OH686_18180 -3.0 -2.1 Murein hydrolase activator NlpD compare
OH686_08130 -3.0 -20.2 acetolactate synthase, large subunit, biosynthetic type compare
OH686_13205 -3.0 -19.8 oxaloacetate decarboxylase alpha subunit compare
OH686_14280 -3.0 -9.9 thiamine biosynthesis protein ThiS compare
OH686_11005 -2.9 -11.4 methionine biosynthesis protein MetW compare
OH686_19595 -2.9 -17.0 Two-component system sensor histidine kinase compare
OH686_11420 -2.9 -11.0 Phosphoserine phosphatase compare
OH686_13800 -2.9 -2.8 diaminopimelate decarboxylase compare
OH686_13200 -2.9 -18.2 acetyl-CoA carboxylase, biotin carboxylase subunit compare
OH686_17570 -2.9 -13.3 2-isopropylmalate synthase compare
OH686_17765 -2.9 -2.0 threonine synthase compare
OH686_08125 -2.8 -13.8 acetolactate synthase, small subunit compare
OH686_08505 -2.8 -1.9 Phospholipid ABC transporter permease protein MlaE compare
OH686_08495 -2.8 -1.9 Phospholipid ABC transporter shuttle protein MlaC compare
OH686_02735 -2.8 -7.5 Flagellar synthesis regulator FleN compare
OH686_09470 -2.7 -3.0 RNA chaperone Hfq compare
OH686_14580 -2.7 -12.0 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
OH686_08465 -2.7 -16.1 histidinol-phosphate transaminase compare
OH686_19770 -2.7 -3.2 septum site-determining protein MinD compare
OH686_14285 -2.7 -14.5 Thiazole synthase compare
OH686_11225 -2.7 -12.3 5-formyltetrahydrofolate cyclo-ligase compare
OH686_09190 -2.7 -13.2 Thiamin-phosphate pyrophosphorylase compare
OH686_08500 -2.7 -1.8 outer membrane lipid asymmetry maintenance protein MlaD compare
OH686_11120 -2.6 -11.6 amino-acid N-acetyltransferase compare
OH686_18240 -2.6 -3.5 Two-component transcriptional response regulator, LuxR family compare
OH686_22720 -2.6 -1.8 Outer-membrane-phospholipid-binding lipoprotein MlaA compare
OH686_22005 -2.6 -12.3 Soluble pyridine nucleotide transhydrogenase compare
OH686_08510 -2.5 -2.4 Phospholipid ABC transporter ATP-binding protein MlaF compare
OH686_08365 -2.4 -6.1 Uncharacterized protein YraP compare
OH686_17760 -2.4 -2.3 Homoserine dehydrogenase compare
OH686_00170 -2.4 -16.0 Isocitrate lyase compare
OH686_17740 -2.3 -2.7 ribosomal protein L19 compare
OH686_07900 -2.3 -8.6 Molybdopterin-synthase adenylyltransferase compare
OH686_21250 -2.3 -19.1 acetate--CoA ligase compare
OH686_09505 -2.3 -4.0 3'-to-5' oligoribonuclease (orn) compare
OH686_11285 -2.3 -15.4 D-2-hydroxyglutarate dehydrogenase compare
OH686_17065 -2.2 -1.9 chaperone protein DnaJ compare
OH686_09625 -2.2 -9.4 hypothetical protein compare
OH686_07925 -2.2 -10.9 TPR domain protein compare
OH686_02995 -2.1 -2.8 flagellar biosynthesis anti-sigma factor FlgM compare
OH686_21295 -2.1 -6.2 arginine/ornithine succinyltransferase, alpha subunit compare
OH686_10060 -2.1 -10.9 NADP-dependent malic enzyme compare
OH686_12075 -2.1 -2.4 Exodeoxyribonuclease V beta chain compare
OH686_09185 -2.1 -8.1 Hydroxymethylpyrimidine phosphate kinase ThiD compare
OH686_19775 -2.0 -4.0 septum site-determining protein MinC compare
OH686_20060 -2.0 -2.7 HtrA protease/chaperone protein compare
OH686_09310 -1.9 -11.7 lytic murein transglycosylase B compare
OH686_09205 -1.9 -8.4 TPR repeat, SEL1 subfamily compare
OH686_03640 -1.8 -2.7 ATP-dependent Clp protease, ATP-binding subunit ClpX compare
OH686_09555 -1.8 -11.5 phosphoserine phosphatase SerB compare
OH686_12545 -1.7 -2.6 Lipid A biosynthesis lauroyl acyltransferase compare
OH686_18990 -1.7 -2.1 phosphoribosylglycinamide formyltransferase compare
OH686_08525 -1.7 -3.0 LPS export ABC transporter periplasmic protein LptC compare
OH686_09475 -1.7 -5.1 tRNA dimethylallyltransferase compare
OH686_20895 -1.7 -3.0 integration host factor, beta subunit compare
OH686_09800 -1.7 -13.6 Mechanosensitive channel MscK compare
OH686_16520 -1.6 -10.6 nicotinate-nucleotide diphosphorylase (carboxylating) compare
OH686_20435 -1.6 -2.1 monothiol glutaredoxin, Grx4 family compare
OH686_01030 -1.6 -2.6 ABC-type siderophore export system, fused ATPase and permease components compare
OH686_03965 -1.6 -3.1 hypothetical protein compare
OH686_04425 -1.5 -3.9 Colicin V production protein compare
OH686_03475 -1.5 -4.3 Oxidoreductase putative compare
OH686_08565 -1.5 -1.4 Phosphocarrier protein, nitrogen regulation associated compare
OH686_18985 -1.5 -11.7 hypothetical protein compare
OH686_22050 -1.5 -2.6 MotA/TolQ/ExbB proton channel family protein compare
OH686_09710 -1.5 -6.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
OH686_12250 -1.5 -5.6 Zinc ABC transporter, permease protein ZnuB compare
OH686_04790 -1.5 -7.3 OmpA family protein compare
OH686_21290 -1.5 -4.9 Succinylornithine transaminase compare
OH686_11275 -1.5 -6.2 Exopolyphosphatase compare
OH686_11060 -1.4 -5.6 phosphoenolpyruvate carboxykinase (ATP) compare
OH686_14420 -1.4 -7.3 hypothetical protein compare
OH686_18175 -1.4 -5.5 protein-L-isoaspartate O-methyltransferase compare
OH686_07640 -1.4 -2.5 probable sensor/response regulator hybrid compare
OH686_07905 -1.4 -2.7 protein-(glutamine-N5) methyltransferase, release factor-specific compare
OH686_00285 -1.4 -9.7 Precorrin-2 oxidase or Sirohydrochlorin ferrochelatase activity of CysG / Uroporphyrinogen-III methyltransferase compare
OH686_22875 -1.3 -4.2 Transcriptional regulator, MerR family compare
OH686_00130 -1.3 -4.9 NADH dehydrogenase (quinone), G subunit compare
OH686_09560 -1.3 -2.4 HAMP domain protein compare
OH686_21280 -1.3 -2.7 Arginine pathway regulatory protein ArgR, repressor of arg regulon compare
OH686_09055 -1.3 -2.6 Transcriptional regulator, AcrR family compare
OH686_13550 -1.3 -2.0 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase / GTP pyrophosphokinase , (p)ppGpp synthetase II compare
OH686_00100 -1.3 -4.5 NADH-ubiquinone oxidoreductase chain M compare
OH686_10165 -1.2 -3.8 Phosphoribosyl-ATP pyrophosphatase compare
OH686_15625 -1.2 -7.0 dTDP-4-dehydrorhamnose reductase compare
OH686_02190 -1.2 -3.8 cytochrome c oxidase, cbb3-type, subunit I compare
OH686_02215 -1.2 -2.5 Putative analog of CcoH, COG3198 compare
OH686_03470 -1.2 -8.8 Sulfite reductase [NADPH] hemoprotein beta-component compare
OH686_00150 -1.2 -4.7 NADH-ubiquinone oxidoreductase chain B compare
OH686_03335 -1.2 -9.4 methionine synthase compare
OH686_11110 -1.2 -4.5 glutamate--cysteine ligase compare
OH686_11430 -1.2 -10.5 Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
OH686_04585 -1.2 -8.0 Biosynthetic Aromatic amino acid aminotransferase alpha or Aromatic-amino-acid aminotransferase compare
OH686_19190 -1.2 -7.9 quinolinate synthetase complex, A subunit compare
OH686_18020 -1.2 -8.1 hypothetical protein compare
OH686_20910 -1.1 -1.6 Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
OH686_00235 -1.1 -8.4 ATP-dependent Clp protease ATP-binding subunit ClpA compare
OH686_02205 -1.1 -1.9 cytochrome c oxidase, cbb3-type, subunit III compare
OH686_13790 -1.1 -3.5 Protein of unknown function DUF484 compare
OH686_22870 -1.1 -2.1 integration host factor, alpha subunit compare
OH686_14425 -1.1 -8.5 glycosyl transferase, group 1 family protein compare
OH686_20040 -1.1 -9.3 L-aspartate oxidase compare
OH686_08595 -1.1 -3.7 Ribonuclease G compare
OH686_20595 -1.0 -8.1 Isocitrate dehydrogenase phosphatase /kinase compare
OH686_13585 -1.0 -6.8 Exodeoxyribonuclease III compare
OH686_19135 -1.0 -4.8 Holliday junction DNA helicase RuvB compare
OH686_20365 -1.0 -3.8 Glycerol-3-phosphate regulon repressor GlpR compare
OH686_18680 -1.0 -3.6 peroxiredoxin compare
OH686_19540 -1.0 -1.5 hypothetical protein compare
OH686_14250 -1.0 -7.3 Cell-division-associated, ABC-transporter-like signaling protein FtsX compare
OH686_04520 -1.0 -3.5 4-hydroxy-2-oxoglutarate aldolase or 2-dehydro-3-deoxyphosphogluconate aldolase compare
OH686_08235 -1.0 -4.8 Mutator MutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) / Thiazole tautomerase TenI-like domain compare
OH686_12235 -1.0 -2.9 Zinc ABC transporter, substrate-binding protein ZnuA compare
OH686_20405 -1.0 -4.5 ornithine carbamoyltransferase compare
OH686_17405 -1.0 -2.0 Predicted transmembrane protein compare
OH686_01710 -1.0 -5.8 Alpha-L-glutamate ligase family protein compare
OH686_14535 -1.0 -5.6 DedA protein compare
OH686_12080 -1.0 -2.9 exodeoxyribonuclease V, gamma subunit compare
OH686_17385 -0.9 -5.0 Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites compare
OH686_20230 -0.9 -1.7 hypothetical protein compare
OH686_20315 -0.9 -1.3 UPF0337 protein compare
OH686_17505 -0.9 -4.0 FeS assembly protein IscX compare
OH686_21550 -0.9 -1.5 Origin specific replication binding factor compare
OH686_01665 -0.9 -6.9 Phosphoenolpyruvate synthase regulatory protein compare
OH686_01635 -0.9 -3.3 CmpX compare
OH686_19125 -0.9 -3.9 crossover junction endodeoxyribonuclease RuvC compare
OH686_08150 -0.9 -7.8 penicillin-binding protein 1B compare
OH686_17260 -0.9 -4.3 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
OH686_22150 -0.9 -2.8 beta-ketoacyl-acyl-carrier-protein synthase II compare
OH686_17020 -0.9 -7.5 Lactate-responsive regulator LldR in Enterobacteria, GntR family compare
OH686_14665 -0.9 -1.4 glutaredoxin 3 compare
OH686_01700 -0.9 -3.9 hypothetical protein compare
OH686_21570 -0.9 -1.9 Phage recombination protein NinG compare
OH686_08200 -0.9 -7.7 AmpG permease compare
OH686_23215 -0.9 -1.4 hypothetical protein compare
OH686_13780 -0.9 -3.2 2-haloalkanoic acid dehalogenase compare
OH686_12195 -0.9 -2.1 Periplasmic thiol:disulfide interchange protein DsbA compare
OH686_00845 -0.9 -3.1 Methylglutaconyl-CoA hydratase compare
OH686_11205 -0.8 -6.7 Xaa-Pro aminopeptidase compare
OH686_17525 -0.8 -2.0 Cytoskeleton protein RodZ compare
OH686_14410 -0.8 -4.9 Glycosyl transferase, group 1 compare
OH686_15885 -0.8 -7.1 phosphomethylpyrimidine synthase compare
OH686_05055 -0.8 -1.7 CDS compare
OH686_15055 -0.8 -1.4 LPS-assembly protein LptD or Organic solvent tolerance protein precursor compare
OH686_13700 -0.8 -3.9 Putrescine utilization regulator compare
OH686_10055 -0.8 -7.3 Multimodular transpeptidase-transglycosylase compare
OH686_21120 -0.8 -7.3 Indolepyruvate ferredoxin oxidoreductase subunit compare
OH686_02110 -0.8 -2.2 Alginate lyase AlgL compare
OH686_03085 -0.8 -5.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. S08-1 in carbon source experiments

For carbon source Sodium acetate across organisms