Experiment set1IT010 for Pseudomonas sp. S08-1

Compare to:

Sodium acetate carbon source

200 most detrimental genes:

  gene name fitness t score description  
OH686_05510 +0.9 1.2 hypothetical protein compare
OH686_21305 +0.9 2.5 succinylglutamate-semialdehyde dehydrogenase compare
OH686_00580 +0.8 1.1 Orotidine 5'-phosphate decarboxylase compare
OH686_11705 +0.8 6.4 Uncharacterized protein compare
OH686_21795 +0.8 3.4 molybdenum cofactor biosynthesis protein B compare
OH686_04105 +0.7 2.5 hypothetical protein compare
OH686_00865 +0.7 1.6 3-hydroxyacyl-CoA dehydrogenase or 17hydroxysteroid dehydrogenase type 10 (HSD10)-like compare
OH686_23625 +0.7 2.9 Rhodanese-like protein ChrE compare
OH686_10515 +0.6 4.9 Glutamine amidotransferase, class I compare
OH686_03000 +0.6 1.0 Flagellar biosynthesis protein FlgN compare
OH686_07980 +0.6 1.7 hypothetical protein' product='hypothetical protein compare
OH686_16245 +0.6 1.8 Gluconokinase compare
OH686_02770 +0.6 4.4 flagellar biosynthetic protein FliP compare
OH686_04745 +0.6 1.0 Na(+) H(+) antiporter subunit D compare
OH686_21310 +0.6 3.5 succinylarginine dihydrolase compare
OH686_02840 +0.6 1.2 flagellar hook-basal body complex protein FliE compare
OH686_17600 +0.6 1.2 hypothetical protein compare
OH686_02730 +0.6 4.4 RNA polymerase sigma factor for flagellar operon compare
OH686_02815 +0.6 5.0 flagellar export protein FliJ compare
OH686_11700 +0.6 4.0 Glutaryl-CoA dehydrogenase compare
OH686_02760 +0.6 4.6 flagellar biosynthetic protein FliR compare
OH686_23770 +0.6 2.3 hypothetical protein compare
OH686_12395 +0.6 0.9 Peroxiredoxin OsmC compare
OH686_02825 +0.6 2.9 Flagellar assembly protein FliH compare
OH686_21600 +0.6 1.0 hypothetical protein compare
OH686_08355 +0.6 1.3 UPF0102 protein YraN compare
OH686_01115 +0.6 1.1 hypothetical protein compare
OH686_13635 +0.6 2.3 ribosomal protein L33 compare
OH686_03045 +0.6 1.9 Zn-dependent hydrolase compare
OH686_16940 +0.6 2.4 Biopolymer transport protein ExbD/TolR compare
OH686_08880 +0.5 2.6 Transcriptional regulator, AcrR family compare
OH686_13085 +0.5 4.9 glucose-6-phosphate dehydrogenase compare
OH686_02795 +0.5 2.1 Flagellar hook-length control protein FliK compare
OH686_12405 +0.5 1.4 hypothetical protein compare
OH686_06255 +0.5 3.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD compare
OH686_01410 +0.5 0.9 hypothetical protein compare
OH686_00380 +0.5 1.7 hypothetical protein compare
OH686_18185 +0.5 4.1 RNA polymerase sigma factor RpoS compare
OH686_18685 +0.5 1.5 Adenylate cyclase compare
OH686_02755 +0.5 4.1 flagellar biosynthetic protein FlhB compare
OH686_02325 +0.5 1.2 hypothetical protein compare
OH686_08160 +0.5 2.0 Pentapeptide repeat family protein compare
OH686_19850 +0.5 0.9 hypothetical protein compare
OH686_21800 +0.5 2.8 Molybdopterin molybdenumtransferase compare
OH686_02945 +0.5 3.3 Flagellar L-ring protein FlgH compare
OH686_13925 +0.5 3.5 Alginate regulatory protein AlgQ, positive transcriptional regulator of AlgD compare
OH686_02940 +0.5 3.2 Flagellar P-ring protein FlgI compare
OH686_10520 +0.5 0.9 hypothetical protein compare
OH686_02765 +0.5 3.4 flagellar biosynthetic protein FliQ compare
OH686_13995 +0.4 4.3 polyphosphate kinase 1 compare
OH686_04705 +0.4 2.2 hypothetical protein compare
OH686_05615 +0.4 1.5 hypothetical protein compare
OH686_21720 +0.4 2.2 hypothetical protein compare
OH686_21700 +0.4 0.9 hypothetical protein compare
OH686_10840 +0.4 1.9 Protein yceI precursor compare
OH686_14835 +0.4 1.0 CDS compare
OH686_05910 +0.4 2.3 Urea carboxylase-related ABC transporter, ATP-binding protein compare
OH686_10235 +0.4 1.0 hypothetical protein compare
OH686_11125 +0.4 1.7 acetylornithine deacetylase (ArgE) compare
OH686_02820 +0.4 3.7 flagellar protein export ATPase FliI compare
OH686_07065 +0.4 2.8 Molybdopterin synthase catalytic subunit MoaE compare
OH686_12120 +0.4 1.7 Anaerobic nitric oxide reductase transcription regulator NorR compare
OH686_08870 +0.4 2.0 Thioesterase compare
OH686_13360 +0.4 1.0 hypothetical protein compare
OH686_02850 +0.4 3.6 Flagellar sensor histidine kinase FleS compare
OH686_10370 +0.4 3.0 molybdate ABC transporter, periplasmic molybdate-binding protein compare
OH686_02745 +0.4 3.7 flagellar biosynthesis protein FlhA compare
OH686_21370 +0.4 1.8 tRNA-Arg compare
OH686_23005 +0.4 0.9 hypothetical protein compare
OH686_22725 +0.4 1.1 hypothetical protein compare
OH686_11695 +0.4 2.7 Transcriptional regulator, LysR family compare
OH686_09740 +0.4 0.8 hypothetical protein compare
OH686_01090 +0.4 1.7 hypothetical protein compare
OH686_02775 +0.4 1.0 flagellar biosynthetic protein FliO compare
OH686_16195 +0.4 1.9 ATPase (PilT family) compare
OH686_05745 +0.4 1.9 hypothetical protein compare
OH686_10095 +0.4 0.8 ATP-dependent protease HslVU, peptidase subunit compare
OH686_02935 +0.4 3.1 flagellar rod assembly protein/muramidase FlgJ compare
OH686_16755 +0.4 2.5 histidine ammonia-lyase compare
OH686_09895 +0.4 2.7 Acyl carrier protein compare
OH686_15650 +0.4 1.3 CDS compare
OH686_08020 +0.4 2.3 hypothetical protein compare
OH686_12130 +0.4 0.8 UPF0391 membrane protein YtjA compare
OH686_05425 +0.4 1.2 CigR (Putative inner membrane protein) compare
OH686_11880 +0.4 2.6 4-aminobutyrate transaminase compare
OH686_02855 +0.4 3.0 Flagellar regulatory protein FleQ compare
OH686_10925 +0.4 2.1 UPF0301 protein YqgE compare
OH686_02785 +0.4 3.0 flagellar motor switch protein FliM compare
OH686_20240 +0.4 0.8 Uncharacterized protein, YkwD family compare
OH686_03130 +0.4 1.8 hypothetical protein compare
OH686_20375 +0.4 2.1 glycerol kinase compare
OH686_04540 +0.4 1.7 tRNA-Ala compare
OH686_11380 +0.3 1.4 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) compare
OH686_17435 +0.3 1.0 preprotein translocase, YajC subunit compare
OH686_04950 +0.3 1.5 Alpha-ribazole-5'-phosphate phosphatase compare
OH686_20645 +0.3 1.6 Tryptophan synthase beta chain like compare
OH686_09880 +0.3 2.0 3-oxoacyl-[ACP] synthase compare
OH686_05735 +0.3 1.4 probable chemotaxis transducer compare
OH686_02835 +0.3 3.1 flagellar M-ring protein FliF compare
OH686_17180 +0.3 1.2 UPF0337 protein YjbJ compare
OH686_02830 +0.3 2.5 flagellar motor switch protein FliG compare
OH686_03790 +0.3 1.4 Cyanoglobin / Hemoglobin-like protein HbN compare
OH686_02700 +0.3 2.8 Flagellar motor rotation protein MotB compare
OH686_02970 +0.3 2.6 flagellar basal-body rod protein FlgC compare
OH686_09965 +0.3 1.6 3-hydroxydecanoyl-[ACP] dehydratase compare
OH686_11985 +0.3 2.7 GDP-mannose 4,6-dehydratase compare
OH686_02780 +0.3 2.0 Flagellar motor switch protein FliN compare
OH686_03750 +0.3 1.1 Peptidyl-prolyl cis-trans isomerase PpiB compare
OH686_15900 +0.3 1.5 tRNA-Leu compare
OH686_07155 +0.3 2.0 Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase) compare
OH686_23665 +0.3 0.7 hypothetical protein compare
OH686_02845 +0.3 2.6 Flagellar two-component response regulator FleR compare
OH686_03225 +0.3 2.2 hypothetical protein compare
OH686_19610 +0.3 1.0 Transcriptional regulator, AraC family compare
OH686_13915 +0.3 2.4 Uncharacterized protein EC-HemY in Proteobacteria (unrelated to HemY-type PPO in GramPositives) compare
OH686_15070 +0.3 1.4 DnaJ-like protein DjlA compare
OH686_14375 +0.3 0.8 glucose-1-phosphate thymidylyltransferase compare
OH686_20815 +0.3 0.6 hypothetical protein compare
OH686_08155 +0.3 1.8 hypothetical protein compare
OH686_20700 +0.3 1.7 Permease of the drug/metabolite transporter (DMT) superfamily compare
OH686_02990 +0.3 2.5 hypothetical protein compare
OH686_03305 +0.3 1.5 hypothetical protein compare
OH686_12025 +0.3 2.6 hypothetical protein compare
OH686_20760 +0.3 1.8 Putative NAD(P)H nitroreductase YdjA compare
OH686_03385 +0.3 1.7 hypothetical protein compare
OH686_23085 +0.3 1.3 HEAT repeat-containing protein compare
OH686_16005 +0.3 1.5 Hydrolase in polyol utilization gene cluster, haloacid dehalogenase-like family compare
OH686_03960 +0.3 1.9 Universal stress protein family 7 compare
OH686_00185 +0.3 1.5 GNAT family acetyltransferase YjcF compare
OH686_20940 +0.3 1.1 GTPase compare
OH686_10990 +0.3 1.7 hypothetical protein compare
OH686_09240 +0.3 1.3 Uncharacterized DUF218 membrane protein compare
OH686_23765 +0.3 1.7 CDS compare
OH686_13125 +0.3 1.1 trans-3-hydroxy-L-proline dehydratase compare
OH686_16785 +0.3 1.7 Ketosteroid isomerase-related compare
OH686_23690 +0.3 1.2 hypothetical protein compare
OH686_10420 +0.3 1.7 hypothetical protein compare
OH686_14870 +0.3 1.7 Glutathione S-transferase family protein compare
OH686_11965 +0.3 2.5 O-antigen export system, ATP-binding protein compare
OH686_19690 +0.3 1.4 hypothetical protein compare
OH686_19085 +0.3 1.8 Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family compare
OH686_20795 +0.3 1.6 Predicted metal-dependent (PHP family) compare
OH686_11610 +0.3 2.1 ABC transporter, ATP-binding protein compare
OH686_21825 +0.3 1.3 lipid kinase YegS compare
OH686_05960 +0.3 1.9 tRNA-Gly compare
OH686_11980 +0.3 2.5 GDP-mannose 4,6-dehydratase compare
OH686_09885 +0.3 2.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
OH686_09975 +0.3 2.2 3-oxoacyl-[ACP] synthase compare
OH686_12030 +0.3 2.4 Glycosyltransferase compare
OH686_21470 +0.3 0.9 Alginate biosynthesis transcriptional activator compare
OH686_21010 +0.3 1.5 NAD(P)H dehydrogenase (quinone) family protein compare
OH686_12305 +0.3 1.3 hypothetical protein compare
OH686_16650 +0.3 2.2 hypothetical protein compare
OH686_05040 +0.3 1.1 hypothetical protein compare
OH686_09970 +0.3 2.1 3-oxoacyl-[ACP] reductase FadG2, NOT compare
OH686_19975 +0.3 1.1 hypothetical protein compare
OH686_06250 +0.3 1.4 Glutathione peroxidase or Thioredoxin peroxidase compare
OH686_10345 +0.3 1.2 Pimeloyl-[acyl-carrier protein] methyl ester esterase BioH compare
OH686_19810 +0.3 1.5 ABC-type Mn2+/Zn2+ transport systems, permease components compare
OH686_17370 +0.3 1.5 Methyl-accepting chemotaxis sensor/transducer protein compare
OH686_01885 +0.3 1.8 DNA-binding response regulator KdpE compare
OH686_07075 +0.3 1.8 molybdenum cofactor biosynthesis protein C compare
OH686_05335 +0.3 1.7 Transcriptional regulator, AraC family compare
OH686_16685 +0.3 1.4 Urease accessory protein UreE compare
OH686_19005 +0.3 1.3 hypothetical protein compare
OH686_11095 +0.3 1.4 Two-component system response regulator OmpR compare
OH686_14545 +0.3 1.0 Probable Fe(2+)-trafficking protein YggX compare
OH686_11950 +0.3 2.5 Glycosyltransferase compare
OH686_22640 +0.3 1.3 hypothetical protein compare
OH686_15675 +0.3 1.6 thioredoxin compare
OH686_23750 +0.3 1.0 RsbS, negative regulator of sigma-B compare
OH686_10255 +0.3 1.8 hypothetical protein compare
OH686_10470 +0.3 1.5 ABC-type phosphate transport system, periplasmic component compare
OH686_05370 +0.3 1.3 tRNA (cmo5U34)-methyltransferase compare
OH686_14785 +0.3 1.1 hypothetical protein compare
OH686_19930 +0.3 1.6 hypothetical protein compare
OH686_03975 +0.3 1.3 hypothetical protein compare
OH686_22320 +0.3 1.6 hypothetical protein' product='hypothetical protein compare
OH686_16845 +0.3 2.1 Kup system potassium uptake protein compare
OH686_06820 +0.3 1.6 Putative lipoprotein in cluster with COG2110 compare
OH686_10570 +0.3 1.2 Transcriptional regulator, GntR family domain / Aspartate aminotransferase compare
OH686_04365 +0.3 1.4 type II secretion system protein J compare
OH686_12540 +0.3 1.0 hypothetical protein compare
OH686_23395 +0.3 1.9 hypothetical protein compare
OH686_18725 +0.3 1.2 Enoyl-CoA hydratase or Enoyl-CoA hydratase EchA5 compare
OH686_09865 +0.3 1.6 hypothetical protein compare
OH686_09145 +0.3 1.0 CDS compare
OH686_11345 +0.2 1.8 UPF0339 protein YegP.N / UPF0339 protein YegP.C compare
OH686_09325 +0.2 1.6 rRNA large subunit m3Psi methyltransferase RlmH compare
OH686_04200 +0.2 2.2 DNA-binding transcriptional regulator, MocR family / aminotransferase domain compare
OH686_09945 +0.2 1.9 FAD-binding protein compare
OH686_10045 +0.2 1.4 Type IV pilus biogenesis protein PilN compare
OH686_13675 +0.2 2.0 Gamma-glutamyl-putrescine oxidase compare
OH686_22010 +0.2 1.3 Glycerophosphoryl diester phosphodiesterase compare
OH686_10335 +0.2 1.4 dethiobiotin synthase compare
OH686_09900 +0.2 1.5 hypothetical protein compare
OH686_07890 +0.2 1.7 Lipid A 3-O-deacylase compare
OH686_03935 +0.2 2.0 Sodium-type flagellar protein motY precursor compare
OH686_09905 +0.2 2.0 Acyl-CoA synthetase, AMP-(fatty) acid ligase / (3R)-hydroxymyristoyl-[ACP] dehydratase compare
OH686_04040 +0.2 1.2 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas sp. S08-1 in carbon source experiments

For carbon source Sodium acetate across organisms