Experiment set1IT010 for Caulobacter crescentus NA1000 Δfur

Compare to:

PYE with Dimethyl Sulfoxide 0.4 vol%

200 most important genes:

  gene name fitness t score description  
CCNA_03783 -4.3 -2.5 cytochrome c biogenesis ABC transporter permease component CcmB compare
CCNA_03577 -4.0 -2.7 DNA polymerase I compare
CCNA_01496 -3.6 -2.2 2-dehydro-3-deoxyphosphooctonate aldolase compare
CCNA_01118 -3.5 -2.4 hypothetical protein compare
CCNA_03337 -3.5 -3.4 peptidoglycan-associated lipoprotein pal compare
CCNA_01556 -3.3 -2.2 LacI-family transcriptional regulator compare
CCNA_01275 -3.2 -2.2 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase compare
CCNA_01732 -3.0 -3.4 DNA repair protein RadA compare
CCNA_01988 -3.0 -2.0 UDP-N-acetylglucosamine O-acyltransferase LpxA compare
CCNA_02064 -2.9 -2.7 UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase compare
CCNA_01129 -2.9 -3.4 flagellar biosynthesis protein FliQ compare
CCNA_01676 -2.6 -1.8 hypothetical protein compare
CCNA_03704 -2.6 -1.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
CCNA_00893 -2.6 -3.5 helix-turn-helix DNA-binding protein compare
CCNA_02941 -2.6 -1.7 transcription elongation factor greA compare
CCNA_02094 -2.5 -3.0 MviM-like NAD-dependent oxidoreductase compare
CCNA_03650 -2.5 -2.4 mannose-1-phosphate guanyltransferase compare
CCNA_00293 -2.4 -3.1 phosphate transport system permease protein pstA compare
CCNA_00306 -2.3 -5.6 lysophospholipid acyltransferase compare
CCNA_03859 -2.3 -3.0 two-component response regulator cenR compare
CCNA_02217 -2.2 -1.8 hypothetical protein compare
CCNA_03755 -2.2 -6.7 bifunctional D-glycero-D-manno-heptose-7-phosphate 1-kinase/D-glycero-D-manno-heptose-1-phosphate adenylyltransferase compare
CCNA_01103 -2.2 -5.8 ADP-heptose--LPS heptosyltransferase compare
CCNA_00304 -2.1 -3.6 3-deoxy-D-manno-octulosonic-acid transferase compare
CCNA_01279 -2.1 -2.4 inorganic polyphosphate/ATP-NAD kinase compare
CCNA_03072 -2.1 -2.4 TetR-family transcriptional regulator compare
CCNA_03835 -2.1 -2.8 3-oxoacyl-(acyl-carrier-protein) synthase compare
CCNA_01130 -2.0 -4.1 flagellar biosynthesis protein FliR compare
CCNA_03548 -2.0 -6.9 carboxy-terminal processing protease precursor compare
CCNA_00953 -1.9 -2.6 flagellar motor switch protein FliN compare
CCNA_02387 -1.9 -1.6 glutathione reductase compare
CCNA_03732 -1.9 -4.2 N-acyl-D-glucosamine 2-epimerase compare
CCNA_00063 -1.9 -1.1 MviN-family integral membrane protein compare
CCNA_03786 -1.9 -3.7 heme chaperone heme-lyase compare
CCNA_02344 -1.9 -2.2 phosphoglycerate mutase compare
CCNA_02085 -1.9 -4.4 anhydromuramoyl-peptide exo-beta-N-acetylglucosaminidase compare
CCNA_03026 -1.8 -4.9 two-component response regulator petR compare
CCNA_02320 -1.8 -5.7 2'-deoxycytidine 5'-triphosphate deaminase compare
CCNA_03277 -1.8 -5.0 glycosyltransferase compare
CCNA_03702 -1.8 -2.3 SSU ribosomal protein S1P compare
CCNA_01538 -1.7 -1.9 pyruvate phosphate dikinase compare
CCNA_02278 -1.6 -1.0 hypothetical protein compare
CCNA_00134 -1.6 -5.8 surface protein compare
CCNA_00708 -1.6 -2.6 cobaltochelatase cobT subunit compare
CCNA_02286 -1.6 -0.9 hypothetical protein compare
CCNA_00135 -1.6 -5.0 trypsin-like peptidase compare
CCNA_03336 -1.6 -5.5 Tol system periplasmic component YbgF compare
CCNA_00296 -1.6 -6.5 phosphate regulon response regulator PhoB compare
CCNA_01939 -1.5 -3.0 ADP-ribosylglycohydrolase compare
CCNA_00239 -1.5 -1.5 serine kinase/phosphatase HprK compare
CCNA_00502 -1.5 -4.9 glycosyl transferase family protein compare
CCNA_02346 -1.5 -2.7 arabinose-5-phosphate isomerase compare
CCNA_01795 -1.5 -3.0 phosphopyruvate hydratase compare
CCNA_00976 -1.4 -2.3 signal peptide peptidase A compare
CCNA_01131 -1.4 -4.9 flagellar biosynthesis protein FlhB compare
CCNA_03013 -1.4 -5.2 alkyl hydroperoxide reductase subunit F compare
CCNA_03052 -1.4 -4.1 acyltransferase compare
CCNA_03135 -1.4 -4.9 flagellum-specific ATP synthase fliL compare
CCNA_03782 -1.4 -1.8 cytochrome c biogenesis ATP-binding export protein CcmA compare
CCNA_03358 -1.4 -2.6 glyceraldehyde 3-phosphate dehydrogenase compare
CCNA_00240 -1.3 -2.2 PTS system, IIA component compare
CCNA_01474 -1.3 -3.7 cytochrome cbb3 oxidase maturation protein ccoS compare
CCNA_02645 -1.3 -1.9 S-adenosyl-methyltransferase MraW compare
CCNA_02449 -1.3 -5.2 hypothetical protein compare
CCNA_03790 -1.2 -1.9 hypothetical protein compare
CCNA_01817 -1.2 -3.6 nitrogen assimilation regulatory protein ntrX compare
CCNA_03683 -1.2 -2.1 maleylpyruvate isomerase compare
CCNA_00588 -1.2 -2.9 SapA domain protein compare
CCNA_01242 -1.2 -5.6 amino acid permease compare
CCNA_02572 -1.2 -4.5 adenylosuccinate lyase compare
CCNA_01784 -1.2 -1.5 hypothetical protein compare
CCNA_03652 -1.2 -4.2 ATP-dependent nuclease subunit A compare
CCNA_01896 -1.2 -0.8 hypothetical protein compare
CCNA_00956 -1.1 -4.8 flagellar biosynthesis protein FlhA compare
CCNA_03201 -1.1 -7.8 adenylosuccinate synthetase compare
CCNA_03975 -1.1 -0.7 hypothetical protein compare
CCNA_02664 -1.1 -1.4 flagellar assembly regulator FliX compare
CCNA_01881 -1.1 -4.2 NAD-binding Rossmann superfamily protein compare
CCNA_03651 -1.1 -2.2 ATP-dependent nuclease subunit B compare
CCNA_00951 -1.1 -3.2 flagellar motor switch protein FliG compare
CCNA_01002 -1.1 -2.2 flagellar biosyntheis protein FliP compare
CCNA_01802 -1.1 -0.6 hypothetical protein compare
CCNA_00292 -1.1 -2.0 phosphate transport system permease protein pstC compare
CCNA_02521 -1.1 -1.0 endonuclease involved in recombination compare
CCNA_01407 -1.0 -2.3 hypothetical protein compare
CCNA_02329 -1.0 -1.3 exodeoxyribonuclease VII large subunit compare
CCNA_R0010 -1.0 -4.4 tRNA-Arg compare
CCNA_00044 -1.0 -1.6 ribosome maturation protein RimP compare
CCNA_02650 -1.0 -2.8 N-acetyl-anhydromuramyl-L-alanine amidase compare
CCNA_03354 -1.0 -3.8 5-formyltetrahydrofolate cyclo-ligase compare
CCNA_01968 -1.0 -1.0 pentapeptide repeats containing protein compare
CCNA_01497 -1.0 -3.4 ADP-L-glycero-D-manno-heptose-6-epimerase compare
CCNA_00349 -1.0 -1.4 integrase/recombinase, XerC-CodV family compare
CCNA_01873 -1.0 -1.9 magnesium and cobalt transport protein corA compare
CCNA_02926 -1.0 -1.8 hypothetical protein compare
CCNA_00952 -1.0 -2.6 flagellar assembly protein FlbE/FliH compare
CCNA_00036 -1.0 -1.5 ribosome-binding factor A compare
CCNA_00257 -0.9 -4.7 adenosylhomocysteinase compare
CCNA_00667 -0.9 -4.0 lipopolysaccharide biosynthesis protein compare
CCNA_03916 -0.9 -1.5 hypothetical protein compare
CCNA_01461 -0.9 -3.4 hypothetical protein compare
CCNA_03988 -0.9 -1.2 hypothetical protein compare
CCNA_00512 -0.9 -3.9 GTP-binding protein, probable translation factor compare
CCNA_01910 -0.9 -3.0 ABC transporter substrate-binding protein compare
CCNA_02060 -0.9 -1.4 CrcB family protein compare
CCNA_01785 -0.9 -3.5 hypothetical protein compare
CCNA_03136 -0.9 -3.7 flagellar export protein FliJ compare
CCNA_03747 -0.9 -5.0 glycosyltransferase compare
CCNA_02778 -0.9 -3.0 hypothetical protein compare
CCNA_00294 -0.9 -1.1 phosphate transport ATP-binding protein pstB compare
CCNA_03872 -0.9 -3.6 tRNA (5-carboxymethylaminomethyl-2-thiouridylate) synthase compare
CCNA_02252 -0.9 -4.3 methylcrotonyl-CoA carboxylase carboxyl transferase subunit compare
CCNA_03547 -0.9 -2.3 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_01883 -0.8 -4.9 acyl-CoA dehydrogenase compare
CCNA_03273 -0.8 -4.9 hypothetical protein compare
CCNA_03101 -0.8 -1.7 site-specific tyrosine recombinase XerD compare
CCNA_01123 -0.8 -4.4 peptide chain release factor RF-3 compare
CCNA_03927 -0.8 -1.1 hypothetical protein compare
CCNA_03882 -0.8 -1.0 phage gp6-like head-tail connector protein compare
CCNA_01483 -0.8 -1.6 hypothetical protein compare
CCNA_02333 -0.8 -1.4 lipid A biosynthesis lauroyl acyltransferase compare
CCNA_03878 -0.8 -2.2 ferrochelatase compare
CCNA_01430 -0.8 -1.4 hypothetical protein compare
CCNA_00535 -0.8 -2.2 hypothetical protein compare
CCNA_00896 -0.8 -0.7 hypothetical protein compare
CCNA_02789 -0.8 -0.9 Xre-family transcriptional regulator compare
CCNA_01214 -0.8 -2.0 YjgP/YjgQ family membrane permease compare
CCNA_00209 -0.8 -4.1 undecaprenyl-phosphomannose:protein mannosyltransferase compare
CCNA_00459 -0.8 -3.1 Na+/H+ antiporter nhaA compare
CCNA_01469 -0.8 -2.5 cytochrome cbb3 oxidase, subunit ccoQ compare
CCNA_03021 -0.8 -1.2 hypothetical protein compare
CCNA_02469 -0.8 -4.4 protein hipA compare
CCNA_00950 -0.8 -3.4 flagellar M-ring protein FliF compare
CCNA_02481 -0.8 -5.8 TonB-dependent receptor compare
CCNA_01324 -0.8 -1.2 LSU ribosomal protein L30P compare
CCNA_03937 -0.7 -2.3 hypothetical protein compare
CCNA_02487 -0.7 -4.1 4-hydroxybenzoate 3-monooxygenase compare
CCNA_02488 -0.7 -3.6 acetate/3-ketoacid CoA transferase, subunit A compare
CCNA_02490 -0.7 -1.3 3-ketoacyl-CoA thiolase compare
CCNA_02937 -0.7 -3.2 hypothetical protein compare
CCNA_02478 -0.7 -4.8 dihydrolipoamide acetyltransferase component of acetoin cleaving system compare
CCNA_03980 -0.7 -3.1 hypothetical protein compare
CCNA_02140 -0.7 -3.3 flagellar motor switch protein fliM compare
CCNA_03944 -0.7 -0.8 hypothetical protein compare
CCNA_02347 -0.7 -4.1 phosphomannomutase/phosphoglucomutase compare
CCNA_02232 -0.7 -5.4 TonB-dependent receptor compare
CCNA_01269 -0.7 -2.7 GcrA superfamily protein compare
CCNA_03871 -0.7 -1.5 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA compare
CCNA_03114 -0.7 -1.6 hypothetical protein compare
CCNA_03588 -0.7 -3.9 two-component sensor histidine kinase PhyK compare
CCNA_00273 -0.7 -0.5 peptide deformylase compare
CCNA_02942 -0.7 -2.3 nucleoside-diphosphate-sugar epimerase compare
CCNA_01283 -0.7 -4.0 NADP-dependent aldose oxidoreductase compare
CCNA_00671 -0.7 -2.4 ABC-type polysaccharide/polyol phosphate export system, permease component compare
CCNA_03987 -0.7 -1.2 hypothetical protein compare
CCNA_01845 -0.7 -2.1 two-component response regulator protein compare
CCNA_03591 -0.7 -2.5 anti-anti sigma factor/receiver protein PhyR compare
CCNA_02109 -0.7 -3.4 thiamine biosynthesis protein thiC compare
CCNA_00143 -0.7 -3.0 ribosomal RNA small subunit methyltransferase I compare
CCNA_03787 -0.7 -0.8 heme exporter protein D CcmD compare
CCNA_01060 -0.7 -1.2 type I protein secretion ATP-binding protein RsaD compare
CCNA_02922 -0.7 -0.8 hypothetical protein compare
CCNA_03726 -0.7 -2.7 3-amino-5-hydroxybenzoic acid synthase family compare
CCNA_00585 -0.7 -4.6 hypothetical protein compare
CCNA_00379 -0.7 -0.9 thiol:disulfide interchange protein dsbA compare
CCNA_01757 -0.7 -2.1 dimethyladenosine transferase compare
CCNA_00607 -0.7 -5.6 TonB-dependent receptor compare
CCNA_01467 -0.7 -4.6 cytochrome cbb3 oxidase subunit I ccoN compare
CCNA_00131 -0.7 -2.7 Rrf2 family protein compare
CCNA_01869 -0.7 -4.7 TonB-dependent receptor compare
CCNA_00190 -0.7 -2.1 acyl-CoA hydrolase compare
CCNA_01251 -0.7 -3.4 FepC-type transporter protein compare
CCNA_02248 -0.7 -1.0 hypothetical protein compare
CCNA_01888 -0.7 -3.4 IclR family HTH transcriptional regulator compare
CCNA_03649 -0.6 -3.5 Ser/Thr kinase-related phosphotransferase compare
CCNA_02116 -0.6 -2.9 hypothetical protein compare
CCNA_03733 -0.6 -4.0 mannose-1-phosphate guanylyltransferase compare
CCNA_01964 -0.6 -0.7 NADH dehydrogenase compare
CCNA_01047 -0.6 -5.2 TonB-dependent receptor compare
CCNA_01876 -0.6 -3.6 oxidoreductase compare
CCNA_02496 -0.6 -4.7 aminotransferase domain protein compare
CCNA_01466 -0.6 -3.4 hypothetical protein compare
CCNA_00128 -0.6 -0.9 argininosuccinate synthase compare
CCNA_02468 -0.6 -1.4 hypothetical protein compare
CCNA_00299 -0.6 -4.0 phosphoribosylamine--glycine ligase compare
CCNA_01120 -0.6 -1.3 hypothetical protein compare
CCNA_03516 -0.6 -1.2 protoheme IX farnesyltransferase coxE compare
CCNA_02479 -0.6 -3.9 aryl-alcohol dehydrogenase compare
CCNA_01503 -0.6 -3.5 phosphotransferase family protein compare
CCNA_00264 -0.6 -2.5 C4-dicarboxylate transport protein compare
CCNA_01092 -0.6 -1.7 ACT domain protein compare
CCNA_02654 -0.6 -3.4 hypothetical protein compare
CCNA_01695 -0.6 -4.3 TonB-dependent outer membrane receptor compare
CCNA_01003 -0.6 -2.2 flagellar biosynthesis protein FliO compare
CCNA_02161 -0.6 -1.5 TetR-family transcriptional regulator compare
CCNA_01489 -0.6 -3.5 alpha-L-arabinofuranosidase compare
CCNA_03542 -0.6 -2.4 hypothetical protein compare
CCNA_02848 -0.6 -1.5 heme chaperone-apocytochrome heme-lyase compare
CCNA_03657 -0.6 -1.8 tryptophan synthase alpha chain compare
CCNA_00669 -0.6 -3.8 glycosyltransferase family 99 protein WbsX compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 Δfur in stress experiments

For stress Dimethyl Sulfoxide across organisms