Experiment set1IT009 for Pseudomonas simiae WCS417

Compare to:

LB with Sodium Chlorite 4 mM

200 most important genes:

  gene name fitness t score description  
PS417_05815 -3.2 -9.6 recombinase RecA compare
PS417_28070 -3.1 -9.5 phosphate ABC transporter ATP-binding protein compare
PS417_23770 -3.0 -5.9 exodeoxyribonuclease V subunit alpha compare
PS417_24155 -2.5 -5.1 ATP-binding protein compare
PS417_28080 -2.3 -13.2 phosphate ABC transporter permease compare
PS417_23775 -1.8 -2.2 exodeoxyribonuclease V subunit beta compare
PS417_03260 -1.7 -3.4 5S ribosomal RNA compare
PS417_27870 -1.6 -5.2 ATP-dependent DNA helicase RecG compare
PS417_02485 -1.6 -2.7 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_02555 -1.6 -12.4 exoribonuclease R compare
PS417_28085 -1.4 -7.7 phosphate-binding protein compare
PS417_20785 -1.4 -6.3 transcriptional regulator compare
PS417_22450 -1.3 -2.7 ATP-dependent DNA helicase RuvA compare
PS417_28075 -1.2 -2.7 phosphate ABC transporter permease compare
PS417_26990 -1.2 -2.5 RNA pyrophosphohydrolase compare
PS417_02280 -1.0 -2.6 GlcNAc-PI de-N-acetylase compare
PS417_13510 -1.0 -1.6 polyketide cyclase compare
PS417_08155 -0.9 -1.9 integration host factor subunit beta compare
PS417_08540 -0.9 -3.4 RNA helicase compare
PS417_08130 -0.9 -2.3 aspartate aminotransferase compare
PS417_23170 -0.8 -2.1 FeS assembly protein IscX compare
PS417_27435 -0.8 -5.2 polyphosphate kinase compare
PS417_20725 -0.8 -2.1 cbb3-type cytochrome c oxidase subunit II compare
PS417_15100 -0.8 -2.9 BatB protein compare
PS417_02975 -0.8 -2.8 3-dehydroquinate dehydratase compare
PS417_27605 -0.8 -5.2 hypothetical protein compare
PS417_19600 -0.8 -1.4 exonuclease compare
PS417_02480 -0.8 -3.7 DNA mismatch repair protein compare
PS417_08620 -0.8 -1.3 hypothetical protein compare
PS417_08125 -0.8 -1.1 prephenate dehydratase compare
PS417_16555 -0.8 -1.8 cupin compare
PS417_08135 -0.8 -4.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27585 -0.8 -2.9 diaminopimelate epimerase compare
PS417_12160 -0.7 -2.2 Fis family transcriptional regulator compare
PS417_05525 -0.7 -3.8 Fis family transcriptional regulator compare
PS417_06245 -0.7 -1.9 zinc metallopeptidase RseP compare
PS417_04965 -0.7 -1.4 hypothetical protein compare
PS417_27610 -0.7 -3.9 hypothetical protein compare
PS417_05140 -0.7 -2.1 dipicolinate synthase compare
PS417_06355 -0.7 -2.4 protein-L-isoaspartate O-methyltransferase compare
PS417_27815 -0.7 -1.2 hypothetical protein compare
PS417_20985 -0.7 -2.3 porin compare
PS417_11965 -0.7 -1.3 GCN5 family acetyltransferase compare
PS417_05500 -0.7 -3.3 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_22520 -0.7 -2.5 histidine kinase compare
PS417_02495 -0.7 -3.3 GTPase HflX compare
PS417_17700 -0.7 -3.0 LysR family transcriptional regulator compare
PS417_07655 -0.6 -2.1 glycerophosphodiester phosphodiesterase compare
PS417_22445 -0.6 -2.1 ATP-dependent DNA helicase RuvB compare
PS417_09930 -0.6 -1.6 hypothetical protein compare
PS417_15105 -0.6 -3.5 membrane protein compare
PS417_24310 -0.6 -2.0 ankyrin compare
PS417_04170 -0.6 -2.2 stringent starvation protein A compare
PS417_17215 -0.6 -2.2 peptidylprolyl isomerase compare
PS417_17610 -0.6 -1.3 AsnC family transcriptional regulator compare
PS417_05510 -0.6 -2.9 alpha/beta hydrolase compare
PS417_04050 -0.6 -1.5 peptide ABC transporter ATP-binding protein compare
PS417_02560 -0.6 -1.8 23S rRNA methyltransferase compare
PS417_13790 -0.6 -2.0 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_24500 -0.6 -2.8 DEAD/DEAH box helicase compare
PS417_14950 -0.6 -2.0 structural protein MipA compare
PS417_21480 -0.6 -1.1 23S rRNA pseudouridylate synthase compare
PS417_15095 -0.6 -2.6 hypothetical protein compare
PS417_03525 -0.6 -1.3 hypothetical protein compare
PS417_05100 -0.6 -1.7 RNA polymerase sigma factor compare
PS417_03780 -0.6 -2.0 general secretion pathway protein GspH compare
PS417_23025 -0.5 -3.8 murein transglycosylase compare
PS417_09325 -0.5 -2.6 peptidase S41 compare
PS417_05065 -0.5 -1.6 hypothetical protein compare
PS417_03560 -0.5 -1.1 GTP-binding protein compare
PS417_15085 -0.5 -2.6 ATPase AAA compare
PS417_12650 -0.5 -1.6 magnesium transporter compare
PS417_03200 -0.5 -2.0 ArsR family transcriptional regulator compare
PS417_26985 -0.5 -3.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02210 -0.5 -2.7 diguanylate cyclase compare
PS417_22565 -0.5 -1.2 formyltetrahydrofolate deformylase compare
PS417_06680 -0.5 -3.8 nuclease PIN compare
PS417_06145 -0.5 -0.9 hypothetical protein compare
PS417_23900 -0.5 -3.7 poly(A) polymerase compare
PS417_15115 -0.5 -2.9 exonuclease SbcD compare
PS417_07560 -0.5 -1.4 universal stress protein UspA compare
PS417_06375 -0.5 -0.8 deoxycytidine triphosphate deaminase compare
PS417_22630 -0.5 -1.8 hypothetical protein compare
PS417_06100 -0.5 -1.3 SAM-dependent methyltransferase compare
PS417_27300 -0.5 -0.9 cell division protein ZapA compare
PS417_11820 -0.5 -1.3 histidine kinase compare
PS417_04055 -0.5 -3.1 peptide transporter compare
PS417_00345 -0.5 -1.8 copper-binding protein compare
PS417_08855 -0.5 -2.4 glycine/betaine ABC transporter substrate-binding protein compare
PS417_15110 -0.5 -2.6 protein BatD compare
PS417_27765 -0.5 -2.8 peptide ABC transporter substrate-binding protein compare
PS417_00915 -0.5 -2.4 aminotransferase compare
PS417_18450 -0.5 -2.0 hydrolase compare
PS417_20715 -0.5 -2.0 cytochrome Cbb3 compare
PS417_28515 -0.5 -1.7 16S rRNA methyltransferase compare
PS417_15470 -0.5 -1.9 saccharopine dehydrogenase compare
PS417_00975 -0.5 -0.9 hypothetical protein compare
PS417_01435 -0.5 -0.9 hypothetical protein compare
PS417_21015 -0.5 -1.3 EstX protein compare
PS417_26365 -0.5 -1.5 EmrB/QacA subfamily drug resistance transporter compare
PS417_01375 -0.5 -1.5 hypothetical protein compare
PS417_13640 -0.5 -1.0 ribose ABC transporter permease compare
PS417_07575 -0.5 -2.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_19900 -0.5 -2.7 phenylalanine 4-monooxygenase compare
PS417_06565 -0.5 -2.2 short-chain dehydrogenase compare
PS417_08380 -0.5 -2.4 ABC transporter ATP-binding protein compare
PS417_13820 -0.5 -3.3 UDP-glucose 6-dehydrogenase compare
PS417_20565 -0.5 -3.1 RNA polymerase subunit sigma-24 compare
PS417_26530 -0.5 -0.8 hypothetical protein compare
PS417_24560 -0.5 -1.8 ferrous iron transporter compare
PS417_04585 -0.5 -0.9 hypothetical protein compare
PS417_02475 -0.4 -1.5 N-acetylmuramoyl-L-alanine amidase compare
PS417_26215 -0.4 -2.2 ferredoxin compare
PS417_10275 -0.4 -0.9 histidine kinase compare
PS417_07120 -0.4 -2.1 RNA polymerase sigma-H factor compare
PS417_20520 -0.4 -1.7 3-phosphoglycerate kinase compare
PS417_13590 -0.4 -1.7 histidine kinase compare
PS417_08565 -0.4 -1.9 peptide methionine sulfoxide reductase compare
PS417_19350 -0.4 -2.2 GTP cyclohydrolase compare
PS417_18130 -0.4 -1.8 ABC transporter substrate-binding protein compare
PS417_03785 -0.4 -1.1 pilus assembly protein PilV compare
PS417_05520 -0.4 -2.9 histidine kinase compare
PS417_11055 -0.4 -1.7 AraC family transcriptional regulator compare
PS417_04290 -0.4 -2.2 hypothetical protein compare
PS417_20855 -0.4 -0.9 hypothetical protein compare
PS417_13795 -0.4 -1.7 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_07150 -0.4 -2.9 permase compare
PS417_05900 -0.4 -1.4 TetR family transcriptional regulator compare
PS417_02415 -0.4 -1.9 phosphoserine phosphatase compare
PS417_02370 -0.4 -0.8 ADP-ribose pyrophosphatase compare
PS417_02510 -0.4 -1.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_16825 -0.4 -1.4 membrane protein compare
PS417_23250 -0.4 -2.6 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_10320 -0.4 -1.6 hypothetical protein compare
PS417_16560 -0.4 -0.9 GNAT family acetyltransferase compare
PS417_11615 -0.4 -1.0 urea ABC transporter ATP-binding protein compare
PS417_13205 -0.4 -1.1 isochorismate-pyruvate lyase compare
PS417_19135 -0.4 -1.1 DeoR faimly transcriptional regulator compare
PS417_09235 -0.4 -0.7 molecular chaperone compare
PS417_05505 -0.4 -2.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_19940 -0.4 -3.1 membrane protein compare
PS417_27595 -0.4 -1.6 recombinase XerC compare
PS417_21425 -0.4 -0.9 4-amino-4-deoxychorismate lyase compare
PS417_16815 -0.4 -1.7 acyl-CoA dehydrogenase compare
PS417_20755 -0.4 -2.3 membrane protein compare
PS417_00160 -0.4 -2.7 2-dehydro-3-deoxy-6-phosphogalactonate aldolase compare
PS417_27005 -0.4 -0.7 membrane protein compare
PS417_09545 -0.4 -0.9 aldehyde-activating protein compare
PS417_25975 -0.4 -2.3 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_16920 -0.4 -2.3 multidrug RND transporter compare
PS417_10220 -0.4 -1.9 hypothetical protein compare
PS417_02895 -0.4 -1.4 precorrin-6Y C5,15-methyltransferase compare
PS417_23915 -0.4 -1.3 pantoate--beta-alanine ligase compare
PS417_08925 -0.4 -2.3 membrane protein compare
PS417_15780 -0.4 -1.6 membrane protein compare
PS417_22235 -0.4 -2.9 aromatic amino acid transporter compare
PS417_21515 -0.4 -2.9 transcriptional regulator compare
PS417_04450 -0.4 -2.7 hypothetical protein compare
PS417_06075 -0.4 -1.0 hypothetical protein compare
PS417_07275 -0.4 -1.7 5-carboxymethyl-2-hydroxymuconate isomerase compare
PS417_09680 -0.4 -1.1 hydrolase compare
PS417_27865 -0.4 -1.3 LysR family transcriptional regulator compare
PS417_09740 -0.4 -1.5 RNA polymerase subunit sigma-24 compare
PS417_00650 -0.4 -0.6 LysR family transcriptional regulator compare
PS417_15930 -0.4 -1.6 thioredoxin reductase compare
PS417_00405 -0.4 -2.7 DNA polymerase I compare
PS417_14110 -0.4 -1.6 2-nitropropane dioxygenase compare
PS417_13010 -0.4 -1.2 alpha/beta hydrolase compare
PS417_19475 -0.4 -2.8 pseudouridine synthase compare
PS417_01005 -0.4 -1.3 methionine ABC transporter substrate-binding protein compare
PS417_17100 -0.4 -2.5 spore coat protein compare
PS417_24370 -0.4 -0.6 (2Fe-2S)-binding protein compare
PS417_19195 -0.4 -1.0 hypothetical protein compare
PS417_22285 -0.4 -2.0 hypothetical protein compare
PS417_05445 -0.4 -0.8 DNA mismatch repair protein MutT compare
PS417_20160 -0.4 -2.3 cysteine synthase compare
PS417_26370 -0.4 -1.5 RNA helicase compare
PS417_00590 -0.4 -1.6 5S ribosomal RNA compare
PS417_20560 -0.4 -2.0 transmembrane anti-sigma factor compare
PS417_02880 -0.4 -1.7 copper chaperone compare
PS417_00370 -0.4 -0.7 hypothetical protein compare
PS417_22620 -0.4 -1.0 pyruvate kinase compare
PS417_03920 -0.4 -1.1 dephospho-CoA kinase compare
PS417_26115 -0.4 -1.5 glutamine ABC transporter ATP-binding protein compare
PS417_14890 -0.4 -1.5 LysR family transcriptional regulator compare
PS417_16520 -0.4 -1.2 cold-shock protein compare
PS417_25765 -0.4 -1.1 transcriptional regulator compare
PS417_18925 -0.4 -2.4 flagellar motor switch protein FliY compare
PS417_21430 -0.4 -1.1 3-oxoacyl-ACP synthase compare
PS417_05975 -0.4 -0.5 chemotaxis protein CheW compare
PS417_06200 -0.4 -2.3 protein-PII uridylyltransferase compare
PS417_27075 -0.4 -1.9 thiol-disulfide isomerase compare
PS417_08730 -0.4 -1.2 cytochrome C compare
PS417_27930 -0.4 -2.2 type VI secretion protein compare
PS417_18460 -0.4 -1.9 transcriptional regulator compare
PS417_22825 -0.4 -2.5 hypothetical protein compare
PS417_01995 -0.4 -1.2 hypothetical protein compare
PS417_11090 -0.4 -1.4 LacI family transcriptional regulator compare
PS417_02915 -0.4 -2.1 precorrin-3B C17-methyltransferase compare
PS417_07845 -0.4 -0.8 transcriptional regulator compare


Specific Phenotypes

For 1 genes in this experiment

For stress Sodium Chlorite in Pseudomonas simiae WCS417

For stress Sodium Chlorite across organisms