Experiment set1IT009 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_3643 -5.6 -2.6 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_1986 -4.4 -1.5 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_1250 -4.1 -1.4 Protein of unknown function (DUF421) compare
EX28DRAFT_2945 -3.7 -2.5 tyrosine recombinase XerD compare
EX28DRAFT_0073 -3.7 -1.2 Negative regulator of sigma E activity compare
EX28DRAFT_3879 -3.6 -5.1 Glycosyltransferase compare
EX28DRAFT_0972 -3.4 -2.6 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_1719 -3.2 -1.0 integration host factor, alpha subunit compare
EX28DRAFT_2252 -3.0 -3.0 TolA protein compare
EX28DRAFT_3754 -2.9 -1.2 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_0526 -2.9 -3.1 hypothetical protein compare
EX28DRAFT_1692 -2.9 -1.4 Biofilm development protein YmgB/AriR compare
EX28DRAFT_2531 -2.9 -4.3 endopeptidase La compare
EX28DRAFT_2250 -2.8 -3.3 peptidoglycan-associated lipoprotein compare
EX28DRAFT_2046 -2.6 -2.3 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_3073 -2.5 -5.2 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_1031 -2.5 -1.2 Protein of unknown function (DUF2566) compare
EX28DRAFT_0523 -2.5 -1.4 Glycosyltransferase like family 2 compare
EX28DRAFT_4419 -2.4 -3.5 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_4077 -2.4 -1.1 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_4271 -2.2 -0.7 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_3375 -2.1 -1.2 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_0531 -2.1 -6.8 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0517 -2.1 -4.2 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
EX28DRAFT_1650 -2.0 -1.3 ribonuclease T compare
EX28DRAFT_4156 -2.0 -1.8 ribulose-phosphate 3-epimerase compare
EX28DRAFT_4003 -2.0 -1.5 phosphate ABC transporter, permease protein PstC compare
EX28DRAFT_4297 -2.0 -1.1 cell division ATP-binding protein FtsE compare
EX28DRAFT_0778 -2.0 -1.3 hypothetical protein compare
EX28DRAFT_4505 -1.9 -3.4 transcription elongation factor/antiterminator RfaH compare
EX28DRAFT_0374 -1.9 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3645 -1.9 -2.8 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_3449 -1.9 -1.5 Predicted membrane protein compare
EX28DRAFT_4184 -1.8 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2974 -1.8 -6.1 transketolase, bacterial and yeast compare
EX28DRAFT_2045 -1.7 -0.8 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_4478 -1.7 -5.6 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_0092 -1.7 -2.0 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_2724 -1.7 -1.6 RNA compare
EX28DRAFT_0272 -1.7 -1.3 phosphohistidine phosphatase, SixA compare
EX28DRAFT_0545 -1.7 -3.3 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_4318 -1.7 -5.1 Glucose-6-phosphate isomerase compare
EX28DRAFT_0732 -1.7 -2.2 YebO-like protein compare
EX28DRAFT_3311 -1.6 -0.9 ribosomal protein L11 methyltransferase compare
EX28DRAFT_0521 -1.6 -2.0 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0125 -1.6 -0.8 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_2162 -1.6 -2.0 hypothetical protein compare
EX28DRAFT_3278 -1.6 -2.1 Glutathione S-transferase compare
EX28DRAFT_0876 -1.6 -0.8 hypothetical protein compare
EX28DRAFT_1596 -1.6 -0.8 Protein of unknown function (DUF1019) compare
EX28DRAFT_3711 -1.5 -0.9 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_0132 -1.5 -3.5 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_0730 -1.5 -1.5 YobH-like protein compare
EX28DRAFT_1838 -1.5 -3.4 3-oxoacyl-(acyl-carrier-protein) synthase III compare
EX28DRAFT_4061 -1.5 -4.4 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_4296 -1.5 -2.9 putative protein insertion permease FtsX compare
EX28DRAFT_3883 -1.5 -2.8 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_1268 -1.4 -1.4 Lysophospholipase L1 and related esterases compare
EX28DRAFT_0312 -1.4 -2.4 phosphate acetyltransferase compare
EX28DRAFT_4386 -1.4 -3.0 Signal transduction histidine kinase compare
EX28DRAFT_0857 -1.4 -1.1 tRNA compare
EX28DRAFT_3687 -1.4 -0.8 D-alanine--D-alanine ligase compare
EX28DRAFT_2115 -1.4 -2.2 hypothetical protein compare
EX28DRAFT_1293 -1.4 -0.8 hypothetical protein compare
EX28DRAFT_0324 -1.3 -1.9 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0529 -1.3 -1.9 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_1510 -1.3 -2.4 hypothetical protein compare
EX28DRAFT_0328 -1.3 -1.3 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_3372 -1.3 -2.8 HflC protein compare
EX28DRAFT_2532 -1.3 -1.7 RNA compare
EX28DRAFT_2873 -1.3 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1573 -1.3 -0.9 hypothetical protein compare
EX28DRAFT_0758 -1.3 -2.7 septum site-determining protein MinC compare
EX28DRAFT_4461 -1.2 -3.0 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_2259 -1.2 -2.4 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_3874 -1.2 -6.4 ADP-heptose:LPS heptosyltransferase compare
EX28DRAFT_3647 -1.2 -3.6 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_3597 -1.2 -2.0 DNA repair protein RadA compare
EX28DRAFT_1360 -1.2 -2.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1087 -1.2 -3.1 CcdB protein compare
EX28DRAFT_4135 -1.2 -1.6 hypothetical protein compare
EX28DRAFT_0528 -1.2 -1.4 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase compare
EX28DRAFT_4191 -1.2 -2.1 small GTP-binding protein domain compare
EX28DRAFT_0769 -1.2 -0.8 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_4459 -1.2 -3.7 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_0096 -1.2 -4.5 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
EX28DRAFT_0061 -1.2 -1.8 Predicted periplasmic lipoprotein compare
EX28DRAFT_1620 -1.2 -0.9 hypothetical protein compare
EX28DRAFT_2985 -1.1 -4.3 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_0111 -1.1 -1.2 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0779 -1.1 -2.2 hypothetical protein compare
EX28DRAFT_4018 -1.1 -1.5 Flavodoxins compare
EX28DRAFT_2258 -1.1 -1.1 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_0329 -1.1 -3.1 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0292 -1.1 -1.5 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_2109 -1.1 -1.8 Reverse transcriptase (RNA-dependent DNA polymerase) compare
EX28DRAFT_1008 -1.1 -3.4 Cupin domain compare
EX28DRAFT_2240 -1.1 -1.3 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_0524 -1.1 -2.6 hypothetical protein compare
EX28DRAFT_0726 -1.1 -1.5 C-terminal peptidase (prc) compare
EX28DRAFT_1477 -1.1 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0833 -1.1 -3.1 Uncharacterized conserved protein compare
EX28DRAFT_2288 -1.1 -1.2 negative regulator of replication initiation SeqA compare
EX28DRAFT_2864 -1.1 -3.2 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_0047 -1.1 -1.8 Protein of unknown function (DUF1488) compare
EX28DRAFT_3438 -1.1 -5.4 alpha,alpha-phosphotrehalase compare
EX28DRAFT_1480 -1.1 -2.8 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_2067 -1.1 -1.1 Transglycosylase SLT domain compare
EX28DRAFT_3732 -1.1 -1.2 poly(A) polymerase compare
EX28DRAFT_4426 -1.1 -0.8 transcriptional regulator, TetR family compare
EX28DRAFT_1715 -1.0 -3.0 Cell wall-associated hydrolases (invasion-associated proteins) compare
EX28DRAFT_2148 -1.0 -4.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0519 -1.0 -6.0 Predicted nucleoside-diphosphate sugar epimerases compare
EX28DRAFT_1396 -1.0 -0.7 Amidases related to nicotinamidase compare
EX28DRAFT_4351 -1.0 -2.8 Signal transduction histidine kinase, nitrogen specific compare
EX28DRAFT_0577 -1.0 -1.9 Arabinose efflux permease compare
EX28DRAFT_3195 -1.0 -3.8 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
EX28DRAFT_0305 -1.0 -3.0 Isopentenyldiphosphate isomerase compare
EX28DRAFT_1845 -1.0 -1.1 RNA compare
EX28DRAFT_2513 -1.0 -1.8 hypothetical protein compare
EX28DRAFT_0202 -1.0 -1.6 Protein of unknown function (DUF2919) compare
EX28DRAFT_4341 -1.0 -1.8 Protein-disulfide isomerase compare
EX28DRAFT_1626 -1.0 -0.9 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_0970 -1.0 -2.1 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_1347 -1.0 -2.4 transcriptional regulator, DeoR family compare
EX28DRAFT_0697 -0.9 -1.1 ABC-type Mn2+/Zn2+ transport systems, permease components compare
EX28DRAFT_0074 -0.9 -4.8 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_4153 -0.9 -1.8 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_0076 -0.9 -1.9 elongation factor 4 compare
EX28DRAFT_3434 -0.9 -2.1 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_3537 -0.9 -2.1 Predicted transcriptional regulator compare
EX28DRAFT_1059 -0.9 -1.3 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog compare
EX28DRAFT_2010 -0.9 -4.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1308 -0.9 -1.0 hypothetical protein compare
EX28DRAFT_0687 -0.9 -1.1 tRNA (cmo5U34)-methyltransferase compare
EX28DRAFT_0541 -0.9 -0.7 RNA compare
EX28DRAFT_3282 -0.9 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2027 -0.9 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_0327 -0.9 -3.3 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_1127 -0.9 -1.9 hypothetical protein compare
EX28DRAFT_2351 -0.9 -3.9 Transcriptional regulator compare
EX28DRAFT_3264 -0.9 -3.0 PAS domain S-box compare
EX28DRAFT_2737 -0.9 -1.0 addiction module antidote protein, HigA family compare
EX28DRAFT_1447 -0.9 -3.3 hypothetical protein compare
EX28DRAFT_4507 -0.9 -2.4 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases compare
EX28DRAFT_0468 -0.9 -1.4 hydroxyethylthiazole kinase compare
EX28DRAFT_2958 -0.9 -0.6 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_2774 -0.9 -2.5 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_4324 -0.9 -1.6 probable addiction module antidote protein compare
EX28DRAFT_3901 -0.9 -3.8 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_1379 -0.9 -3.2 Lactoylglutathione lyase and related lyases compare
EX28DRAFT_3353 -0.9 -1.0 Fumarate reductase subunit C compare
EX28DRAFT_3297 -0.8 -2.8 ribonuclease, Rne/Rng family compare
EX28DRAFT_2751 -0.8 -2.7 Uncharacterized homolog of Blt101 compare
EX28DRAFT_1530 -0.8 -0.9 hypothetical protein compare
EX28DRAFT_4350 -0.8 -0.8 nitrogen regulation protein NR(I) compare
EX28DRAFT_4463 -0.8 -3.0 Teichoic acid biosynthesis proteins compare
EX28DRAFT_0713 -0.8 -1.9 Uncharacterized protein, homolog of Cu resistance protein CopC compare
EX28DRAFT_2703 -0.8 -1.3 Protein of unknown function (DUF2799) compare
EX28DRAFT_2003 -0.8 -1.2 ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component compare
EX28DRAFT_1129 -0.8 -1.5 hypothetical protein compare
EX28DRAFT_2983 -0.8 -3.7 Endonuclease I compare
EX28DRAFT_3900 -0.8 -1.3 SpoU rRNA Methylase family/SpoU, rRNA methylase, C-terminal compare
EX28DRAFT_2424 -0.8 -2.2 transcriptional regulator, TetR family compare
EX28DRAFT_0323 -0.8 -2.3 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_1398 -0.8 -1.5 hypothetical protein compare
EX28DRAFT_2907 -0.8 -1.3 Bacterial protein of unknown function (DUF903) compare
EX28DRAFT_1443 -0.8 -3.0 hypothetical protein compare
EX28DRAFT_1558 -0.8 -2.4 hypothetical protein compare
EX28DRAFT_3171 -0.8 -1.1 Predicted membrane protein compare
EX28DRAFT_3876 -0.8 -4.6 Lipid A core - O-antigen ligase and related enzymes compare
EX28DRAFT_0091 -0.8 -0.7 hypothetical protein compare
EX28DRAFT_1500 -0.8 -1.5 Predicted transcriptional regulators compare
EX28DRAFT_0698 -0.8 -2.8 ABC-type Mn/Zn transport systems, ATPase component compare
EX28DRAFT_3474 -0.8 -1.8 hypothetical protein compare
EX28DRAFT_0686 -0.8 -1.1 tRNA (mo5U34)-methyltransferase compare
EX28DRAFT_0166 -0.8 -3.8 polyphosphate kinase 1 compare
EX28DRAFT_1460 -0.8 -2.0 Acetyltransferases, including N-acetylases of ribosomal proteins compare
EX28DRAFT_1771 -0.8 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3185 -0.8 -1.9 transcriptional regulator, DeoR family compare
EX28DRAFT_3719 -0.8 -2.0 Bacterial chaperone lipoprotein (PulS_OutS) compare
EX28DRAFT_1294 -0.8 -1.9 hypothetical protein compare
EX28DRAFT_2359 -0.8 -2.3 5'-methylthioribose kinase (EC 2.7.1.100) compare
EX28DRAFT_1679 -0.8 -1.6 pyruvate kinase compare
EX28DRAFT_2721 -0.8 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2845 -0.8 -0.8 Protein of unknown function (DUF3561) compare
EX28DRAFT_1591 -0.8 -1.4 hypothetical protein compare
EX28DRAFT_0620 -0.8 -0.7 Flagellar protein FliT compare
EX28DRAFT_2348 -0.8 -0.5 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_3698 -0.8 -1.7 guanosine monophosphate reductase, eukaryotic compare
EX28DRAFT_0679 -0.8 -1.7 P pilus assembly protein, pilin FimA compare
EX28DRAFT_4422 -0.7 -3.8 argininosuccinate lyase compare
EX28DRAFT_1305 -0.7 -1.0 hypothetical protein compare
EX28DRAFT_2773 -0.7 -1.4 RNA compare
EX28DRAFT_4452 -0.7 -0.8 thioredoxin compare
EX28DRAFT_2993 -0.7 -1.4 putative oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_3611 -0.7 -0.4 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_0818 -0.7 -1.1 hypothetical protein compare
EX28DRAFT_3616 -0.7 -1.6 threonine synthase compare
EX28DRAFT_0286 -0.7 -1.0 tRNA pseudouridine(38-40) synthase compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in in planta experiments

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours across organisms