Experiment set1IT009 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

200 most detrimental genes:

  gene name fitness t score description  
EX28DRAFT_1590 +2.7 2.6 hypothetical protein compare
EX28DRAFT_3936 +1.7 2.5 hypothetical protein compare
EX28DRAFT_2425 +1.7 1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0725 +1.6 1.9 Activator of osmoprotectant transporter ProP compare
EX28DRAFT_2037 +1.4 1.8 DMSO reductase, iron-sulfur subunit compare
EX28DRAFT_0611 +1.3 7.1 Flagellar hook-length control protein compare
EX28DRAFT_1021 +1.3 1.7 Protein of unknown function (DUF2474) compare
EX28DRAFT_0180 +1.3 2.0 Peroxiredoxin compare
EX28DRAFT_0613 +1.2 7.3 flagellar protein export ATPase FliI compare
EX28DRAFT_1946 +1.2 1.8 Transcriptional regulators compare
EX28DRAFT_0623 +1.2 2.7 Bacterial flagellin N-terminal helical region/Bacterial flagellin C-terminal helical region compare
EX28DRAFT_0724 +1.1 1.2 GAF domain-containing protein compare
EX28DRAFT_0612 +1.1 3.9 flagellar export protein FliJ compare
EX28DRAFT_0614 +1.1 4.2 Flagellar biosynthesis/type III secretory pathway protein compare
EX28DRAFT_2627 +1.0 3.9 Phosphoglycerate dehydrogenase and related dehydrogenases compare
EX28DRAFT_3626 +1.0 1.5 RNA compare
EX28DRAFT_2498 +1.0 2.7 Haemolysin expression modulating protein compare
EX28DRAFT_3519 +1.0 1.3 Predicted transcriptional regulators compare
EX28DRAFT_1787 +1.0 3.6 Predicted membrane protein compare
EX28DRAFT_0177 +1.0 1.7 arsenate reductase (glutaredoxin) compare
EX28DRAFT_1841 +1.0 0.8 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_0895 +1.0 2.1 Phage small terminase subunit compare
EX28DRAFT_1859 +1.0 1.8 flagellar basal-body rod protein FlgB compare
EX28DRAFT_1492 +0.9 1.5 dethiobiotin synthase compare
EX28DRAFT_2448 +0.9 4.4 P pilus assembly protein, pilin FimA compare
EX28DRAFT_2378 +0.9 1.5 ABC-type enterobactin transport system, permease component compare
EX28DRAFT_1857 +0.9 3.1 Flagellar hook capping protein compare
EX28DRAFT_0905 +0.9 1.6 phage baseplate assembly protein V compare
EX28DRAFT_2407 +0.9 3.5 hypothetical protein compare
EX28DRAFT_1853 +0.9 4.6 Flagellar basal body L-ring protein compare
EX28DRAFT_4269 +0.9 0.9 SOS regulatory protein LexA compare
EX28DRAFT_1318 +0.9 1.7 hypothetical protein compare
EX28DRAFT_2472 +0.9 0.5 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_1855 +0.9 3.8 flagellar hook-basal body protein compare
EX28DRAFT_0625 +0.9 3.9 RNA polymerase sigma factor, FliA/WhiG family compare
EX28DRAFT_3556 +0.8 2.0 Uncharacterized secreted protein compare
EX28DRAFT_1854 +0.8 4.3 flagellar basal-body rod protein FlgG, Gram-negative bacteria compare
EX28DRAFT_0479 +0.8 3.3 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain compare
EX28DRAFT_1283 +0.8 0.9 hypothetical protein compare
EX28DRAFT_0434 +0.8 0.8 hypothetical protein compare
EX28DRAFT_0680 +0.8 5.7 flagellar biosynthetic protein FlhB compare
EX28DRAFT_0364 +0.8 1.3 Alkylated DNA repair protein compare
EX28DRAFT_2085 +0.8 1.1 Uncharacterized conserved protein compare
EX28DRAFT_2644 +0.8 2.5 Ogr/Delta-like zinc finger compare
EX28DRAFT_0609 +0.8 4.8 flagellar motor switch protein FliM compare
EX28DRAFT_2738 +0.8 2.3 ADP-ribose pyrophosphatase compare
EX28DRAFT_4262 +0.8 1.0 phage shock protein G compare
EX28DRAFT_1742 +0.8 1.6 PTS system, lactose/cellobiose family IIB component compare
EX28DRAFT_2497 +0.8 2.7 Biofilm formation regulator YbaJ compare
EX28DRAFT_4484 +0.8 3.8 rarD protein compare
EX28DRAFT_3183 +0.8 1.9 2-dehydro-3-deoxyglucarate aldolase compare
EX28DRAFT_0616 +0.8 4.9 flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) compare
EX28DRAFT_3676 +0.8 1.7 mraZ protein compare
EX28DRAFT_0601 +0.7 1.1 Protein of unknown function (DUF2525) compare
EX28DRAFT_1128 +0.7 1.2 hypothetical protein compare
EX28DRAFT_2708 +0.7 1.0 Protein of unknown function (DUF2946) compare
EX28DRAFT_0606 +0.7 4.2 flagellar biosynthetic protein FliP compare
EX28DRAFT_1851 +0.7 4.4 flagellar rod assembly protein/muramidase FlgJ compare
EX28DRAFT_1785 +0.7 0.5 Putative hemolysin compare
EX28DRAFT_3517 +0.7 2.7 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides compare
EX28DRAFT_0791 +0.7 1.3 type VI secretion-associated protein, BMA_A0400 family compare
EX28DRAFT_2165 +0.7 2.7 efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family compare
EX28DRAFT_2674 +0.7 2.6 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain compare
EX28DRAFT_1038 +0.7 1.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1856 +0.7 5.0 flagellar hook-basal body protein compare
EX28DRAFT_3452 +0.7 1.3 arginine deiminase (EC 3.5.3.6) compare
EX28DRAFT_0416 +0.7 2.0 AraC-type DNA-binding domain-containing proteins compare
EX28DRAFT_1201 +0.7 2.6 phenazine biosynthesis protein PhzF family compare
EX28DRAFT_1547 +0.7 1.8 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_0896 +0.7 1.8 Phage head completion protein (GPL) compare
EX28DRAFT_3148 +0.7 2.5 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components compare
EX28DRAFT_2355 +0.7 2.6 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
EX28DRAFT_0734 +0.7 3.5 RNA compare
EX28DRAFT_1716 +0.7 2.1 ABC-type cobalamin transport system, ATPase component compare
EX28DRAFT_0861 +0.7 1.6 Response regulator receiver domain compare
EX28DRAFT_0681 +0.7 5.0 flagellar biosynthesis protein FlhA compare
EX28DRAFT_1672 +0.6 2.1 ABC-type amino acid transport system, permease component compare
EX28DRAFT_3024 +0.6 2.8 oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain compare
EX28DRAFT_0792 +0.6 1.7 type VI secretion-associated protein, ImpA family compare
EX28DRAFT_4447 +0.6 1.8 PPIC-type PPIASE domain compare
EX28DRAFT_0888 +0.6 2.1 hypothetical protein compare
EX28DRAFT_1862 +0.6 1.1 Flagellar biosynthesis/type III secretory pathway chaperone compare
EX28DRAFT_1278 +0.6 1.6 hypothetical protein compare
EX28DRAFT_0607 +0.6 3.6 flagellar biosynthetic protein FliO compare
EX28DRAFT_3828 +0.6 1.9 Amidases related to nicotinamidase compare
EX28DRAFT_0914 +0.6 2.4 Phage P2 GpE compare
EX28DRAFT_1109 +0.6 1.6 peroxiredoxin, OsmC subfamily compare
EX28DRAFT_4142 +0.6 1.9 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) compare
EX28DRAFT_2880 +0.6 2.0 5'-3' exonuclease (including N-terminal domain of PolI) compare
EX28DRAFT_0425 +0.6 2.1 Protein of unknown function (DUF1282) compare
EX28DRAFT_1892 +0.6 2.2 Uncharacterized protein involved in formation of curli polymers compare
EX28DRAFT_2421 +0.6 0.4 Protein of unknown function (DUF1158) compare
EX28DRAFT_1412 +0.6 1.1 phenylacetic acid degradation protein PaaD compare
EX28DRAFT_0746 +0.6 1.7 NUDIX domain compare
EX28DRAFT_2811 +0.6 1.8 Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) compare
EX28DRAFT_1880 +0.6 0.9 Predicted periplasmic lipoprotein compare
EX28DRAFT_4347 +0.6 0.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2515 +0.6 1.5 O-6-methylguanine DNA methyltransferase compare
EX28DRAFT_3973 +0.6 2.0 Molecular chaperone (small heat shock protein) compare
EX28DRAFT_0647 +0.6 0.5 Ferritin-like protein compare
EX28DRAFT_0004 +0.6 2.5 Type IV leader peptidase family compare
EX28DRAFT_2371 +0.6 1.4 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
EX28DRAFT_0042 +0.6 2.8 DNA protecting protein DprA compare
EX28DRAFT_0218 +0.6 1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2015 +0.6 2.0 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase compare
EX28DRAFT_0610 +0.6 3.3 Flagellar basal body-associated protein compare
EX28DRAFT_4481 +0.6 2.4 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E compare
EX28DRAFT_1956 +0.6 0.5 hypothetical protein compare
EX28DRAFT_0901 +0.6 0.4 hypothetical protein compare
EX28DRAFT_0882 +0.5 1.7 hypothetical protein compare
EX28DRAFT_3510 +0.5 2.2 Uncharacterized conserved protein compare
EX28DRAFT_2866 +0.5 4.1 Uncharacterized domain of BarA-like signal transduction histidine kinases compare
EX28DRAFT_0160 +0.5 0.5 hypothetical protein compare
EX28DRAFT_1766 +0.5 2.7 Nitroreductase compare
EX28DRAFT_0820 +0.5 1.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0195 +0.5 1.9 Protein of unknown function (DUF1176) compare
EX28DRAFT_3487 +0.5 1.0 hypothetical protein compare
EX28DRAFT_4221 +0.5 1.7 Sugar kinases, ribokinase family compare
EX28DRAFT_1387 +0.5 1.0 Transcriptional regulator compare
EX28DRAFT_0602 +0.5 0.6 Dextransucrase DSRB compare
EX28DRAFT_4065 +0.5 2.0 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_2560 +0.5 2.1 Predicted transcriptional regulator compare
EX28DRAFT_1539 +0.5 1.4 O-6-methylguanine DNA methyltransferase compare
EX28DRAFT_0141 +0.5 0.9 hypothetical protein compare
EX28DRAFT_0658 +0.5 1.0 Flagellar transcriptional activator (FlhD) compare
EX28DRAFT_1977 +0.5 1.1 hemimethylated DNA binding domain compare
EX28DRAFT_1397 +0.5 2.2 cupin fold metalloprotein, WbuC family compare
EX28DRAFT_1384 +0.5 1.6 Predicted ester cyclase compare
EX28DRAFT_3063 +0.5 2.0 ABC-type Fe3+-hydroxamate transport system, periplasmic component compare
EX28DRAFT_3348 +0.5 2.2 Membrane transporters of cations and cationic drugs compare
EX28DRAFT_0206 +0.5 1.7 sulfate ABC transporter, permease protein CysT compare
EX28DRAFT_1271 +0.5 1.1 NlpC/P60 family compare
EX28DRAFT_2851 +0.5 1.2 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_1478 +0.5 0.6 Pili and flagellar-assembly chaperone, PapD N-terminal domain compare
EX28DRAFT_0373 +0.5 2.5 Predicted hydrolase of alkaline phosphatase superfamily compare
EX28DRAFT_2216 +0.5 2.1 biotin synthase (EC 2.8.1.6) compare
EX28DRAFT_0938 +0.5 2.1 Predicted metal-dependent phosphoesterases (PHP family) compare
EX28DRAFT_0604 +0.5 2.0 flagellar biosynthetic protein FliR compare
EX28DRAFT_3657 +0.5 1.7 Uncharacterized membrane-associated protein compare
EX28DRAFT_2491 +0.5 1.1 restart primosome assembly protein PriC compare
EX28DRAFT_0044 +0.5 2.9 Zn-finger domain associated with topoisomerase type I compare
EX28DRAFT_3956 +0.5 0.6 hypothetical protein compare
EX28DRAFT_4198 +0.5 1.8 alkylphosphonate utilization operon protein PhnA compare
EX28DRAFT_4093 +0.5 2.2 3-oxoacyl-(acyl-carrier-protein) synthase compare
EX28DRAFT_1525 +0.5 2.4 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0807 +0.5 2.5 type VI secretion ATPase, ClpV1 family compare
EX28DRAFT_3702 +0.5 1.2 nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC 2.4.2.19) compare
EX28DRAFT_1513 +0.5 2.6 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases compare
EX28DRAFT_3089 +0.5 0.4 Transcriptional regulators compare
EX28DRAFT_1426 +0.5 2.2 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) compare
EX28DRAFT_2441 +0.5 3.1 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain compare
EX28DRAFT_3484 +0.5 1.6 hypothetical protein compare
EX28DRAFT_3720 +0.5 1.9 Putative multicopper oxidases compare
EX28DRAFT_1436 +0.5 1.1 Major Facilitator Superfamily compare
EX28DRAFT_3653 +0.5 2.2 L-ribulose-5-phosphate 4-epimerase compare
EX28DRAFT_4281 +0.5 1.2 Glycerophosphoryl diester phosphodiesterase compare
EX28DRAFT_3902 +0.5 1.5 sodium--glutamate symport carrier (gltS) compare
EX28DRAFT_2136 +0.5 2.1 Asparaginase compare
EX28DRAFT_0853 +0.5 0.7 respiratory nitrate reductase chaperone NarJ compare
EX28DRAFT_1497 +0.5 0.5 hypothetical protein compare
EX28DRAFT_2132 +0.5 1.2 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components compare
EX28DRAFT_2076 +0.5 1.1 type II secretion system protein G compare
EX28DRAFT_1624 +0.5 0.9 electron transport complex, RnfABCDGE type, B subunit compare
EX28DRAFT_0667 +0.5 1.2 P pilus assembly protein, chaperone PapD compare
EX28DRAFT_1783 +0.5 1.6 Uncharacterized conserved protein compare
EX28DRAFT_4139 +0.5 2.9 Signal transduction histidine kinase compare
EX28DRAFT_1754 +0.5 2.3 Uncharacterized conserved protein compare
EX28DRAFT_3214 +0.5 1.6 RNA compare
EX28DRAFT_2130 +0.5 1.4 Biofilm formation protein (YliH/bssR) compare
EX28DRAFT_3534 +0.5 2.1 Putative GTPases (G3E family) compare
EX28DRAFT_2370 +0.5 1.4 uncharacterized domain 1 compare
EX28DRAFT_1988 +0.5 1.8 Predicted ATP-dependent protease compare
EX28DRAFT_1922 +0.4 0.4 Stress-induced bacterial acidophilic repeat motif compare
EX28DRAFT_1829 +0.4 1.8 hydrolase, TatD family compare
EX28DRAFT_2276 +0.4 2.1 sensor histidine kinase inhibitor, KipI family compare
EX28DRAFT_4309 +0.4 1.5 Maltose-binding periplasmic proteins/domains compare
EX28DRAFT_1085 +0.4 2.0 formate dehydrogenase, beta subunit, Fe-S containing compare
EX28DRAFT_0910 +0.4 1.2 Caudovirales tail fibre assembly protein compare
EX28DRAFT_3508 +0.4 1.3 Lactoylglutathione lyase and related lyases compare
EX28DRAFT_0204 +0.4 1.6 Dyp-type peroxidase family compare
EX28DRAFT_2401 +0.4 1.7 acetoin reductases compare
EX28DRAFT_2465 +0.4 1.7 Lysophospholipase L1 and related esterases compare
EX28DRAFT_1858 +0.4 2.0 flagellar basal-body rod protein FlgC compare
EX28DRAFT_2457 +0.4 1.6 Protein of unknown function (DUF1471) compare
EX28DRAFT_2768 +0.4 1.7 efflux pump membrane protein (multidrug resistance protein A) compare
EX28DRAFT_2377 +0.4 0.8 ABC-type Fe3+-siderophore transport system, permease component compare
EX28DRAFT_1909 +0.4 0.4 Protein of unknown function (DUF3574) compare
EX28DRAFT_2124 +0.4 1.3 PAP2 (acid phosphatase) superfamily protein compare
EX28DRAFT_0881 +0.4 1.0 hypothetical protein compare
EX28DRAFT_0254 +0.4 0.6 hypothetical protein compare
EX28DRAFT_0912 +0.4 1.5 phage contractile tail tube protein, P2 family compare
EX28DRAFT_1527 +0.4 0.8 hypothetical protein compare
EX28DRAFT_1752 +0.4 2.0 transaminase, acetylornithine/succinylornithine family/succinylornithine transaminase family compare
EX28DRAFT_0867 +0.4 1.3 hypothetical protein compare
EX28DRAFT_2994 +0.4 2.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1762 +0.4 1.5 Protein of unknown function (DUF1496) compare
EX28DRAFT_1747 +0.4 0.6 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
EX28DRAFT_0285 +0.4 1.4 Aspartate-semialdehyde dehydrogenase compare
EX28DRAFT_0560 +0.4 2.3 RND family efflux transporter, MFP subunit compare
EX28DRAFT_4150 +0.4 0.8 Protein of unknown function (DUF2531) compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in in planta experiments

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours across organisms