Experiment set1IT008 for Variovorax sp. OAS795

Compare to:

D-Ribose carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS23225 -5.8 -14.1 glutamate synthase-related protein compare
ABID97_RS17265 -5.3 -4.6 two-component system response regulator OmpR compare
ABID97_RS01565 -5.3 -11.2 DNA starvation/stationary phase protection protein compare
ABID97_RS16600 -5.2 -8.7 CysB family HTH-type transcriptional regulator compare
ABID97_RS06575 -4.8 -7.9 trehalose-phosphatase compare
ABID97_RS05260 -4.7 -1.7 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS05250 -4.6 -3.2 anthranilate synthase component I compare
ABID97_RS14095 -4.6 -10.2 PAS domain S-box protein compare
ABID97_RS15380 -4.4 -11.0 nitrite/sulfite reductase compare
ABID97_RS09180 -4.3 -3.0 DNA polymerase I compare
ABID97_RS08425 -4.1 -4.0 tryptophan synthase subunit alpha compare
ABID97_RS07095 -4.1 -11.0 transaldolase compare
ABID97_RS25015 -3.9 -2.7 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS04960 -3.8 -1.4 ATP-binding protein compare
ABID97_RS07000 -3.8 -9.5 threonine ammonia-lyase, biosynthetic compare
ABID97_RS13990 -3.7 -2.6 amino acid aminotransferase compare
ABID97_RS10885 -3.7 -7.0 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS02600 -3.5 -3.4 homoserine O-acetyltransferase compare
ABID97_RS07065 -3.5 -10.3 glucose-6-phosphate dehydrogenase compare
ABID97_RS13860 -3.4 -5.3 hypothetical protein compare
ABID97_RS05275 -3.3 -2.2 anthranilate phosphoribosyltransferase compare
ABID97_RS16595 -3.2 -2.3 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS07430 -3.2 -8.3 pantoate--beta-alanine ligase compare
ABID97_RS17600 -3.2 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS19695 -3.2 -1.7 alpha/beta fold hydrolase compare
ABID97_RS07435 -3.0 -5.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS03805 -3.0 -1.5 ATP-binding protein compare
ABID97_RS24770 -3.0 -9.3 LacI family DNA-binding transcriptional regulator compare
ABID97_RS24920 -2.9 -2.1 Holliday junction branch migration protein RuvA compare
ABID97_RS15665 -2.8 -10.5 [protein-PII] uridylyltransferase compare
ABID97_RS20615 -2.8 -6.9 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS16910 -2.7 -8.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABID97_RS16535 -2.7 -7.7 arginine/lysine/ornithine decarboxylase compare
ABID97_RS08220 -2.6 -10.6 phosphoenolpyruvate carboxylase compare
ABID97_RS05280 -2.6 -1.8 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS25085 -2.6 -3.9 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS03910 -2.6 -1.8 orotate phosphoribosyltransferase compare
ABID97_RS17270 -2.6 -8.7 ATP-binding protein compare
ABID97_RS21150 -2.6 -11.2 FAD-dependent oxidoreductase compare
ABID97_RS15375 -2.5 -3.3 DUF934 domain-containing protein compare
ABID97_RS08365 -2.5 -4.4 ribonuclease III compare
ABID97_RS06345 -2.5 -4.4 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS12180 -2.5 -2.4 hypothetical protein compare
ABID97_RS02455 -2.5 -3.1 nucleotidyltransferase family protein compare
ABID97_RS08435 -2.5 -1.7 phosphoribosylanthranilate isomerase compare
ABID97_RS05765 -2.5 -1.7 UDP-glucose 4-epimerase GalE compare
ABID97_RS02420 -2.5 -7.4 protealysin inhibitor emfourin compare
ABID97_RS24170 -2.4 -5.8 ATP-binding protein compare
ABID97_RS04500 -2.4 -1.6 HPr(Ser) kinase/phosphatase compare
ABID97_RS07500 -2.4 -2.6 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS06460 -2.3 -1.6 sigma 54-interacting transcriptional regulator compare
ABID97_RS21300 -2.3 -4.7 phosphogluconate dehydratase compare
ABID97_RS23915 -2.3 -3.9 heme o synthase compare
ABID97_RS14160 -2.3 -7.0 cell division protein ZapE compare
ABID97_RS12575 -2.3 -1.6 ATP-grasp domain-containing protein compare
ABID97_RS05370 -2.3 -5.2 ATP-binding protein compare
ABID97_RS24755 -2.3 -3.6 sugar ABC transporter substrate-binding protein compare
ABID97_RS03110 -2.2 -5.8 helix-turn-helix transcriptional regulator compare
ABID97_RS03125 -2.2 -8.5 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS24760 -2.2 -7.0 sugar ABC transporter ATP-binding protein conserved
ABID97_RS13025 -2.2 -1.1 helix-turn-helix domain-containing protein compare
ABID97_RS02135 -2.2 -7.6 GspH/FimT family pseudopilin compare
ABID97_RS16065 -2.2 -1.6 PDR/VanB family oxidoreductase compare
ABID97_RS23455 -2.2 -3.9 hypothetical protein compare
ABID97_RS17850 -2.2 -1.0 tetratricopeptide repeat protein compare
ABID97_RS22620 -2.2 -9.6 response regulator transcription factor compare
ABID97_RS22625 -2.2 -8.5 HAMP domain-containing sensor histidine kinase compare
ABID97_RS23950 -2.1 -8.7 cytochrome c oxidase assembly protein compare
ABID97_RS23320 -2.1 -7.7 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS23220 -2.1 -1.9 glutamate synthase subunit beta compare
ABID97_RS23425 -2.1 -2.1 tRNA-Pro compare
ABID97_RS07405 -2.1 -9.6 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS21205 -2.0 -8.7 IlvD/Edd family dehydratase compare
ABID97_RS23450 -2.0 -4.8 MBOAT family protein compare
ABID97_RS14850 -2.0 -2.4 P-II family nitrogen regulator compare
ABID97_RS01755 -2.0 -7.3 pyruvate kinase compare
ABID97_RS18580 -2.0 -1.7 CoA transferase compare
ABID97_RS11290 -1.9 -1.0 DNA repair protein RadC compare
ABID97_RS10405 -1.9 -1.4 efflux transporter outer membrane subunit compare
ABID97_RS07415 -1.9 -10.9 quinolinate synthase NadA compare
ABID97_RS06520 -1.9 -1.3 SAM-dependent methyltransferase compare
ABID97_RS20095 -1.9 -2.2 DNA topoisomerase IV subunit B compare
ABID97_RS23940 -1.9 -5.9 cytochrome c oxidase subunit 3 compare
ABID97_RS00255 -1.9 -9.6 type IV pilus twitching motility protein PilT compare
ABID97_RS07410 -1.9 -4.3 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS25895 -1.9 -1.4 ABC transporter permease compare
ABID97_RS24765 -1.9 -4.3 ABC transporter permease conserved
ABID97_RS06450 -1.9 -2.2 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS15370 -1.8 -7.3 phosphoadenosine phosphosulfate reductase family protein compare
ABID97_RS02145 -1.8 -7.5 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS08480 -1.8 -1.2 citrate synthase compare
ABID97_RS03720 -1.8 -1.3 4-hydroxy-2-oxoheptanedioate aldolase compare
ABID97_RS02125 -1.8 -14.1 PilC/PilY family type IV pilus protein compare
ABID97_RS06365 -1.8 -1.5 TlpA disulfide reductase family protein compare
ABID97_RS02120 -1.8 -8.4 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS23330 -1.8 -5.5 c-type cytochrome compare
ABID97_RS04660 -1.8 -7.5 6-phosphofructokinase compare
ABID97_RS02110 -1.8 -11.4 type IV pilus modification protein PilV compare
ABID97_RS12170 -1.7 -1.5 DUF6531 domain-containing protein compare
ABID97_RS23430 -1.7 -9.8 type IV-A pilus assembly ATPase PilB compare
ABID97_RS02115 -1.7 -8.4 PilW family protein compare
ABID97_RS23360 -1.7 -1.1 hypothetical protein compare
ABID97_RS24055 -1.7 -3.1 TetR/AcrR family transcriptional regulator compare
ABID97_RS01650 -1.7 -1.1 orotidine-5'-phosphate decarboxylase compare
ABID97_RS08445 -1.7 -8.1 FimV/HubP family polar landmark protein compare
ABID97_RS27980 -1.7 -2.0 alcohol dehydrogenase catalytic domain-containing protein compare
ABID97_RS01840 -1.7 -9.0 DUF1631 family protein compare
ABID97_RS23435 -1.7 -10.3 type II secretion system F family protein compare
ABID97_RS02130 -1.6 -8.1 type IV pilin protein compare
ABID97_RS03915 -1.6 -6.5 DUF4124 domain-containing protein compare
ABID97_RS10295 -1.6 -1.0 winged helix-turn-helix transcriptional regulator compare
ABID97_RS13480 -1.6 -2.1 FAD-dependent monooxygenase compare
ABID97_RS06600 -1.6 -4.6 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS23230 -1.6 -7.7 transposase compare
ABID97_RS05670 -1.6 -1.5 glucose-1-phosphate thymidylyltransferase RfbA compare
ABID97_RS00335 -1.6 -5.7 c-type cytochrome compare
ABID97_RS23325 -1.6 -5.1 cytochrome c biogenesis protein ResB compare
ABID97_RS10695 -1.6 -5.3 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS08775 -1.6 -1.5 ribosome small subunit-dependent GTPase A compare
ABID97_RS19065 -1.6 -4.8 GntR family transcriptional regulator compare
ABID97_RS23270 -1.6 -6.7 pilus assembly protein PilP compare
ABID97_RS23965 -1.5 -7.1 cytochrome c oxidase subunit II compare
ABID97_RS17590 -1.5 -7.9 endopeptidase La compare
ABID97_RS00585 -1.5 -7.6 TlpA disulfide reductase family protein compare
ABID97_RS04765 -1.5 -1.7 thiol:disulfide interchange protein DsbA/DsbL compare
ABID97_RS25525 -1.5 -2.5 LacI family DNA-binding transcriptional regulator compare
ABID97_RS17970 -1.5 -4.0 protein TolQ compare
ABID97_RS10355 -1.5 -5.3 FadR/GntR family transcriptional regulator compare
ABID97_RS09935 -1.5 -5.4 hypothetical protein compare
ABID97_RS12845 -1.5 -2.7 form I ribulose bisphosphate carboxylase large subunit compare
ABID97_RS03640 -1.5 -2.8 SMP-30/gluconolactonase/LRE family protein compare
ABID97_RS01725 -1.4 -1.2 META domain-containing protein compare
ABID97_RS23920 -1.4 -5.4 COX15/CtaA family protein compare
ABID97_RS22705 -1.4 -7.7 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS10920 -1.4 -1.3 molybdenum cofactor biosynthesis protein MoaE compare
ABID97_RS16695 -1.4 -9.2 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS18205 -1.4 -3.2 XRE family transcriptional regulator compare
ABID97_RS14090 -1.4 -1.1 response regulator transcription factor compare
ABID97_RS06190 -1.4 -6.0 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS08250 -1.4 -6.6 RluA family pseudouridine synthase compare
ABID97_RS23170 -1.4 -1.9 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
ABID97_RS13260 -1.4 -1.2 acyl-CoA dehydrogenase family protein compare
ABID97_RS15365 -1.4 -4.0 sulfate adenylyltransferase subunit CysD compare
ABID97_RS05365 -1.4 -3.4 DUF4390 domain-containing protein compare
ABID97_RS01825 -1.4 -8.0 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS08360 -1.4 -5.7 DUF4845 domain-containing protein compare
ABID97_RS25485 -1.4 -2.0 fumarylacetoacetate hydrolase family protein compare
ABID97_RS10705 -1.4 -3.0 H-NS histone family protein compare
ABID97_RS03680 -1.4 -5.4 lysophospholipid transporter LplT compare
ABID97_RS03800 -1.3 -2.5 O-antigen ligase family protein compare
ABID97_RS23440 -1.3 -7.7 A24 family peptidase compare
ABID97_RS17085 -1.3 -1.9 ORF6N domain-containing protein compare
ABID97_RS06095 -1.3 -7.3 MBL fold metallo-hydrolase compare
ABID97_RS06175 -1.3 -9.7 STAS domain-containing protein compare
ABID97_RS24705 -1.3 -3.5 response regulator compare
ABID97_RS27720 -1.3 -1.2 fumarate reductase/succinate dehydrogenase flavoprotein subunit compare
ABID97_RS28635 -1.3 -4.3 IclR family transcriptional regulator compare
ABID97_RS21945 -1.3 -2.2 hemolysin family protein compare
ABID97_RS11640 -1.3 -5.1 TetR family transcriptional regulator compare
ABID97_RS23930 -1.3 -6.0 SURF1 family protein compare
ABID97_RS14625 -1.3 -3.9 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS12140 -1.3 -4.2 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS02140 -1.3 -5.7 sugar transferase compare
ABID97_RS15360 -1.3 -4.3 GTP-binding protein compare
ABID97_RS16690 -1.3 -4.9 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS22975 -1.3 -4.6 cytochrome c1 compare
ABID97_RS00780 -1.3 -2.0 ABC transporter ATP-binding protein compare
ABID97_RS02460 -1.3 -8.8 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS23960 -1.2 -7.8 cytochrome c oxidase subunit I compare
ABID97_RS13600 -1.2 -1.0 hypothetical protein compare
ABID97_RS22530 -1.2 -1.4 aldo/keto reductase compare
ABID97_RS15995 -1.2 -3.5 PilZ domain-containing protein compare
ABID97_RS23650 -1.2 -8.4 serine/threonine-protein kinase compare
ABID97_RS01940 -1.2 -3.5 D-erythronate dehydrogenase compare
ABID97_RS03115 -1.2 -4.0 2,3-epoxybenzoyl-CoA dihydrolase compare
ABID97_RS06415 -1.2 -6.9 sigma-54 dependent transcriptional regulator compare
ABID97_RS23265 -1.2 -4.1 type IV pilus secretin PilQ compare
ABID97_RS25345 -1.2 -6.0 transporter associated domain-containing protein compare
ABID97_RS20910 -1.2 -1.4 succinylglutamate desuccinylase/aspartoacylase family protein compare
ABID97_RS08710 -1.2 -4.3 polynucleotide adenylyltransferase PcnB compare
ABID97_RS23380 -1.2 -6.6 lytic transglycosylase domain-containing protein compare
ABID97_RS05755 -1.2 -2.0 glycosyltransferase compare
ABID97_RS24045 -1.2 -2.9 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS12155 -1.2 -4.9 glycogen debranching protein GlgX compare
ABID97_RS23285 -1.1 -5.5 pilus assembly protein PilM compare
ABID97_RS14200 -1.1 -2.7 pseudouridine synthase compare
ABID97_RS26810 -1.1 -1.0 DJ-1/PfpI family protein compare
ABID97_RS08430 -1.1 -1.5 tryptophan synthase subunit beta compare
ABID97_RS12865 -1.1 -2.2 ribulose-phosphate 3-epimerase compare
ABID97_RS26485 -1.1 -2.4 cytochrome c oxidase assembly protein compare
ABID97_RS23280 -1.1 -4.2 PilN domain-containing protein compare
ABID97_RS02210 -1.1 -5.9 pilin compare
ABID97_RS14115 -1.1 -2.9 dihydrolipoyl dehydrogenase compare
ABID97_RS24690 -1.1 -6.4 methyl-accepting chemotaxis protein compare
ABID97_RS10680 -1.1 -5.8 histidine phosphatase family protein compare
ABID97_RS23275 -1.1 -5.0 type 4a pilus biogenesis protein PilO compare
ABID97_RS25100 -1.1 -5.0 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS17055 -1.1 -2.8 YhbY family RNA-binding protein compare
ABID97_RS03265 -1.1 -1.3 dioxygenase compare
ABID97_RS05235 -1.1 -0.8 PA2169 family four-helix-bundle protein compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source D-Ribose in Variovorax sp. OAS795

For carbon source D-Ribose across organisms