Experiment set1IT008 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2845 -6.3 -2.2 Protein of unknown function (DUF3561) compare
EX28DRAFT_0038 -5.9 -2.0 K+ transport systems, NAD-binding component compare
EX28DRAFT_0286 -5.8 -2.0 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_0921 -5.1 -1.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4156 -4.9 -1.7 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0001 -4.8 -2.2 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_1396 -4.7 -1.0 Amidases related to nicotinamidase compare
EX28DRAFT_2252 -4.7 -2.1 TolA protein compare
EX28DRAFT_3006 -4.7 -0.9 citrate lyase acyl carrier protein compare
EX28DRAFT_1956 -4.5 -0.9 hypothetical protein compare
EX28DRAFT_3687 -4.5 -0.9 D-alanine--D-alanine ligase compare
EX28DRAFT_3643 -4.5 -3.7 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_1596 -4.4 -0.9 Protein of unknown function (DUF1019) compare
EX28DRAFT_1510 -4.4 -2.6 hypothetical protein compare
EX28DRAFT_1986 -4.3 -1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_1700 -4.3 -1.2 hypothetical protein compare
EX28DRAFT_2045 -4.2 -0.8 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_0523 -4.1 -1.2 Glycosyltransferase like family 2 compare
EX28DRAFT_2046 -4.1 -2.0 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_3320 -4.1 -0.8 hypothetical protein compare
EX28DRAFT_1841 -3.9 -0.8 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_0073 -3.6 -1.0 Negative regulator of sigma E activity compare
EX28DRAFT_4212 -3.6 -0.7 Acetyltransferase (GNAT) family compare
EX28DRAFT_1307 -3.5 -1.6 hypothetical protein compare
EX28DRAFT_4347 -3.5 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0328 -3.5 -1.4 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_2531 -3.3 -3.4 endopeptidase La compare
EX28DRAFT_2724 -3.3 -1.4 RNA compare
EX28DRAFT_0712 -3.3 -0.9 DNA polymerase III, theta subunit compare
EX28DRAFT_4297 -3.2 -0.9 cell division ATP-binding protein FtsE compare
EX28DRAFT_0526 -3.2 -2.5 hypothetical protein compare
EX28DRAFT_3368 -3.1 -0.9 tRNA dimethylallyltransferase compare
EX28DRAFT_0517 -3.1 -4.8 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase compare
EX28DRAFT_0594 -3.0 -1.0 T/G mismatch-specific endonuclease (EC 3.1.-.-) compare
EX28DRAFT_2958 -3.0 -0.8 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_4318 -2.9 -3.4 Glucose-6-phosphate isomerase compare
EX28DRAFT_2250 -2.8 -2.6 peptidoglycan-associated lipoprotein compare
EX28DRAFT_1250 -2.8 -1.1 Protein of unknown function (DUF421) compare
EX28DRAFT_4184 -2.8 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0374 -2.7 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3711 -2.7 -0.8 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_4300 -2.6 -1.4 Predicted membrane protein compare
EX28DRAFT_4348 -2.6 -1.6 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_4505 -2.5 -2.9 transcription elongation factor/antiterminator RfaH compare
EX28DRAFT_1268 -2.4 -1.6 Lysophospholipase L1 and related esterases compare
EX28DRAFT_0065 -2.4 -1.1 thioredoxin compare
EX28DRAFT_0312 -2.4 -2.8 phosphate acetyltransferase compare
EX28DRAFT_1719 -2.3 -1.1 integration host factor, alpha subunit compare
EX28DRAFT_3879 -2.3 -2.8 Glycosyltransferase compare
EX28DRAFT_3282 -2.2 -1.3 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4155 -2.2 -2.6 DNA adenine methylase (dam) compare
EX28DRAFT_1530 -2.1 -1.0 hypothetical protein compare
EX28DRAFT_2974 -2.1 -3.0 transketolase, bacterial and yeast compare
EX28DRAFT_2589 -2.1 -0.7 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_4405 -2.1 -0.8 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_0528 -2.0 -1.6 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase compare
EX28DRAFT_3883 -2.0 -1.9 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2945 -2.0 -1.2 tyrosine recombinase XerD compare
EX28DRAFT_4380 -2.0 -1.0 Protein of unknown function (DUF1471) compare
EX28DRAFT_3754 -1.9 -0.8 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_4426 -1.9 -0.9 transcriptional regulator, TetR family compare
EX28DRAFT_3058 -1.8 -2.6 Signal transduction histidine kinase compare
EX28DRAFT_1031 -1.8 -0.9 Protein of unknown function (DUF2566) compare
EX28DRAFT_0531 -1.8 -5.4 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2259 -1.8 -2.7 Cytochrome bd-type quinol oxidase, subunit 1 compare
EX28DRAFT_4077 -1.8 -0.9 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_4386 -1.8 -2.1 Signal transduction histidine kinase compare
EX28DRAFT_3900 -1.8 -1.3 SpoU rRNA Methylase family/SpoU, rRNA methylase, C-terminal compare
EX28DRAFT_0468 -1.8 -1.5 hydroxyethylthiazole kinase compare
EX28DRAFT_2185 -1.7 -1.7 transcriptional regulator, TraR/DksA family compare
EX28DRAFT_0778 -1.7 -0.9 hypothetical protein compare
EX28DRAFT_0697 -1.7 -1.4 ABC-type Mn2+/Zn2+ transport systems, permease components compare
EX28DRAFT_4191 -1.7 -2.0 small GTP-binding protein domain compare
EX28DRAFT_2951 -1.7 -2.0 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3645 -1.7 -1.5 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_0922 -1.7 -1.4 TonB family C-terminal domain compare
EX28DRAFT_4018 -1.6 -1.2 Flavodoxins compare
EX28DRAFT_0331 -1.6 -1.1 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0434 -1.6 -0.7 hypothetical protein compare
EX28DRAFT_4003 -1.6 -1.0 phosphate ABC transporter, permease protein PstC compare
EX28DRAFT_4478 -1.6 -2.8 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_3519 -1.6 -0.9 Predicted transcriptional regulators compare
EX28DRAFT_4459 -1.6 -4.7 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_2851 -1.6 -1.9 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_3205 -1.6 -2.0 Predicted acetyltransferase compare
EX28DRAFT_1650 -1.6 -1.5 ribonuclease T compare
EX28DRAFT_0228 -1.5 -1.0 tRNA compare
EX28DRAFT_3278 -1.5 -1.7 Glutathione S-transferase compare
EX28DRAFT_3476 -1.5 -0.8 hypothetical protein compare
EX28DRAFT_4042 -1.5 -1.3 Protein of unknown function (DUF2629) compare
EX28DRAFT_0818 -1.5 -1.8 hypothetical protein compare
EX28DRAFT_3647 -1.5 -2.9 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_2532 -1.5 -3.6 RNA compare
EX28DRAFT_0068 -1.5 -0.8 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_3073 -1.5 -3.6 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_4420 -1.5 -1.0 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
EX28DRAFT_3041 -1.5 -1.8 hypothetical protein compare
EX28DRAFT_4061 -1.4 -3.7 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_2513 -1.4 -1.9 hypothetical protein compare
EX28DRAFT_3434 -1.4 -1.2 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_3849 -1.4 -1.2 PTS system, mannitol-specific IIC component compare
EX28DRAFT_1398 -1.4 -1.2 hypothetical protein compare
EX28DRAFT_0726 -1.4 -2.1 C-terminal peptidase (prc) compare
EX28DRAFT_0521 -1.4 -2.3 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2189 -1.4 -2.8 P pilus assembly protein, chaperone PapD compare
EX28DRAFT_0166 -1.4 -5.1 polyphosphate kinase 1 compare
EX28DRAFT_1252 -1.4 -0.8 TIGR00156 family protein compare
EX28DRAFT_0713 -1.4 -1.5 Uncharacterized protein, homolog of Cu resistance protein CopC compare
EX28DRAFT_2655 -1.4 -2.7 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins compare
EX28DRAFT_4350 -1.4 -0.9 nitrogen regulation protein NR(I) compare
EX28DRAFT_2649 -1.3 -1.5 tRNA compare
EX28DRAFT_3948 -1.3 -1.3 KAP family P-loop domain compare
EX28DRAFT_1620 -1.3 -0.7 hypothetical protein compare
EX28DRAFT_3029 -1.3 -1.4 hypothetical protein compare
EX28DRAFT_2859 -1.3 -1.9 hypothetical protein compare
EX28DRAFT_4299 -1.3 -0.9 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
EX28DRAFT_1692 -1.3 -0.8 Biofilm development protein YmgB/AriR compare
EX28DRAFT_2255 -1.3 -1.4 tol-pal system-associated acyl-CoA thioesterase compare
EX28DRAFT_3264 -1.3 -3.6 PAS domain S-box compare
EX28DRAFT_0972 -1.3 -1.3 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_1573 -1.3 -0.7 hypothetical protein compare
EX28DRAFT_2774 -1.3 -3.2 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_3438 -1.3 -4.7 alpha,alpha-phosphotrehalase compare
EX28DRAFT_4327 -1.3 -1.7 transcriptional regulator, IclR family compare
EX28DRAFT_3212 -1.3 -2.2 Lipoprotein NlpI, contains TPR repeats compare
EX28DRAFT_2270 -1.3 -0.6 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_4152 -1.3 -0.8 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_3224 -1.3 -4.1 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_0772 -1.2 -2.1 Predicted membrane protein compare
EX28DRAFT_0343 -1.2 -2.5 O-succinylbenzoate synthase (EC 4.2.1.113) compare
EX28DRAFT_1877 -1.2 -1.2 lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase compare
EX28DRAFT_1019 -1.2 -1.6 Putative hemolysin compare
EX28DRAFT_0620 -1.2 -0.7 Flagellar protein FliT compare
EX28DRAFT_2267 -1.2 -3.4 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_4410 -1.2 -1.3 methionine repressor, MetJ compare
EX28DRAFT_1056 -1.2 -1.1 ABC-type polar amino acid transport system, ATPase component compare
EX28DRAFT_0970 -1.2 -2.3 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_2240 -1.2 -0.9 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_0291 -1.2 -1.4 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_3410 -1.2 -1.7 hypothetical protein compare
EX28DRAFT_3537 -1.2 -3.6 Predicted transcriptional regulator compare
EX28DRAFT_3449 -1.2 -1.1 Predicted membrane protein compare
EX28DRAFT_1500 -1.2 -1.0 Predicted transcriptional regulators compare
EX28DRAFT_2646 -1.2 -1.1 HNH endonuclease compare
EX28DRAFT_3162 -1.2 -1.9 Transcriptional regulators compare
EX28DRAFT_2873 -1.1 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0529 -1.1 -1.6 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_0125 -1.1 -0.5 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_4224 -1.1 -1.3 Predicted double-glycine peptidase compare
EX28DRAFT_1534 -1.1 -2.3 RNA compare
EX28DRAFT_2148 -1.1 -4.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3893 -1.1 -2.0 ribonuclease PH compare
EX28DRAFT_0046 -1.1 -1.4 shikimate dehydrogenase compare
EX28DRAFT_0129 -1.1 -0.7 RNA compare
EX28DRAFT_3297 -1.1 -2.9 ribonuclease, Rne/Rng family compare
EX28DRAFT_1360 -1.1 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0674 -1.1 -1.7 Response regulator receiver domain compare
EX28DRAFT_3574 -1.1 -0.5 Protein of unknown function (DUF1435) compare
EX28DRAFT_0679 -1.1 -2.2 P pilus assembly protein, pilin FimA compare
EX28DRAFT_0272 -1.1 -0.6 phosphohistidine phosphatase, SixA compare
EX28DRAFT_3874 -1.1 -5.7 ADP-heptose:LPS heptosyltransferase compare
EX28DRAFT_0738 -1.1 -1.1 Predicted membrane protein compare
EX28DRAFT_4461 -1.1 -2.1 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_1479 -1.1 -2.1 hypothetical protein compare
EX28DRAFT_2118 -1.1 -1.0 arsenate reductase (glutaredoxin) compare
EX28DRAFT_1676 -1.1 -1.4 ABC-type metal ion transport system, ATPase component compare
EX28DRAFT_4154 -1.1 -2.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1087 -1.1 -2.9 CcdB protein compare
EX28DRAFT_2723 -1.1 -1.0 SsrA-binding protein compare
EX28DRAFT_2288 -1.0 -0.9 negative regulator of replication initiation SeqA compare
EX28DRAFT_2075 -1.0 -0.9 type II secretion system protein H compare
EX28DRAFT_2985 -1.0 -2.6 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_1136 -1.0 -2.3 Uncharacterized conserved protein (DUF2132) compare
EX28DRAFT_1076 -1.0 -1.0 ABC-type branched-chain amino acid transport systems, ATPase component compare
EX28DRAFT_2262 -1.0 -2.4 Transcriptional regulators compare
EX28DRAFT_0779 -1.0 -1.1 hypothetical protein compare
EX28DRAFT_2864 -1.0 -2.2 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_0092 -1.0 -0.6 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_4452 -1.0 -1.0 thioredoxin compare
EX28DRAFT_1838 -1.0 -2.0 3-oxoacyl-(acyl-carrier-protein) synthase III compare
EX28DRAFT_3616 -1.0 -1.5 threonine synthase compare
EX28DRAFT_0118 -1.0 -2.1 SseB protein C-terminal domain/SseB protein N-terminal domain compare
EX28DRAFT_1412 -1.0 -1.2 phenylacetic acid degradation protein PaaD compare
EX28DRAFT_3719 -1.0 -1.6 Bacterial chaperone lipoprotein (PulS_OutS) compare
EX28DRAFT_3185 -1.0 -2.1 transcriptional regulator, DeoR family compare
EX28DRAFT_0466 -1.0 -1.8 hypothetical protein compare
EX28DRAFT_0111 -1.0 -0.8 FeS cluster assembly scaffold IscU compare
EX28DRAFT_3825 -1.0 -1.3 YsaB-like lipoprotein compare
EX28DRAFT_2927 -1.0 -2.7 Transcriptional regulators compare
EX28DRAFT_0167 -1.0 -0.9 phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent compare
EX28DRAFT_1094 -1.0 -2.0 putative FMN-dependent luciferase-like monooxygenase, KPN_01858 family compare
EX28DRAFT_2472 -1.0 -0.3 Membrane protein implicated in regulation of membrane protease activity compare
EX28DRAFT_0621 -1.0 -2.8 flagellar biosynthetic protein FliS compare
EX28DRAFT_0813 -1.0 -1.6 Uncharacterized conserved protein compare
EX28DRAFT_1305 -1.0 -1.3 hypothetical protein compare
EX28DRAFT_1844 -0.9 -0.7 pseudouridine synthase, RluA family compare
EX28DRAFT_2205 -0.9 -1.0 Molybdopterin converting factor, large subunit compare
EX28DRAFT_1839 -0.9 -3.0 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_2298 -0.9 -3.1 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_0411 -0.9 -3.0 Uncharacterized membrane protein compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in in planta experiments

For in planta Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=1_hours across organisms