Experiment set1IT007 for Pseudomonas simiae WCS417

Compare to:

LB with Sodium nitrate 200 mM

200 most important genes:

  gene name fitness t score description  
PS417_24155 -2.9 -3.8 ATP-binding protein compare
PS417_23770 -2.6 -4.2 exodeoxyribonuclease V subunit alpha compare
PS417_05975 -2.1 -1.4 chemotaxis protein CheW compare
PS417_23950 -2.1 -3.1 polynucleotide phosphorylase/polyadenylase compare
PS417_05985 -1.8 -5.6 chemotaxis protein CheY compare
PS417_02210 -1.8 -8.6 diguanylate cyclase compare
PS417_27870 -1.7 -4.4 ATP-dependent DNA helicase RecG compare
PS417_03930 -1.6 -8.6 thymidine phosphorylase compare
PS417_20880 -1.5 -2.3 GntR family transcriptional regulator compare
PS417_22450 -1.4 -2.2 ATP-dependent DNA helicase RuvA compare
PS417_23825 -1.4 -8.7 penicillin-binding protein compare
PS417_20585 -1.4 -5.8 chemotaxis protein compare
PS417_19625 -1.4 -4.2 histidine kinase compare
PS417_21625 -1.4 -1.8 DNA-binding protein compare
PS417_08230 -1.4 -2.1 lipopolysaccharide biosynthesis protein RfbH compare
PS417_04365 -1.3 -1.7 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_23580 -1.3 -1.3 peptidylprolyl isomerase compare
PS417_06895 -1.3 -4.2 DNA-binding protein compare
PS417_17215 -1.2 -3.3 peptidylprolyl isomerase compare
PS417_08155 -1.2 -2.9 integration host factor subunit beta compare
PS417_19425 -1.2 -1.1 allantoicase compare
PS417_02555 -1.2 -9.4 exoribonuclease R compare
PS417_26985 -1.2 -5.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_27865 -1.1 -1.9 LysR family transcriptional regulator compare
PS417_00535 -1.1 -2.0 Holliday junction resolvase compare
PS417_20650 -1.1 -7.1 hypothetical protein compare
PS417_03525 -1.1 -1.8 hypothetical protein compare
PS417_05830 -1.1 -4.3 hypothetical protein compare
PS417_18545 -1.0 -4.0 cell division protein compare
PS417_27795 -1.0 -1.2 orotate phosphoribosyltransferase compare
PS417_03560 -1.0 -2.7 GTP-binding protein compare
PS417_26990 -1.0 -1.8 RNA pyrophosphohydrolase compare
PS417_08220 -1.0 -1.1 epimerase compare
PS417_24835 -1.0 -5.0 hypothetical protein compare
PS417_15105 -1.0 -6.4 membrane protein compare
PS417_08410 -1.0 -1.2 hypothetical protein compare
PS417_20985 -1.0 -2.9 porin compare
PS417_20855 -1.0 -1.1 hypothetical protein compare
PS417_06245 -1.0 -2.2 zinc metallopeptidase RseP compare
PS417_24705 -1.0 -4.4 D-alanyl-D-alanine carboxypeptidase compare
PS417_02475 -0.9 -3.1 N-acetylmuramoyl-L-alanine amidase compare
PS417_08170 -0.9 -5.8 capsular biosynthesis protein compare
PS417_08195 -0.9 -4.8 hypothetical protein compare
PS417_19630 -0.9 -2.1 LuxR family transcriptional regulator compare
PS417_04595 -0.9 -2.8 cell division protein MraZ compare
PS417_02720 -0.9 -1.0 TetR family transcriptional regulator compare
PS417_08185 -0.9 -3.4 glycosyl transferase compare
PS417_27585 -0.9 -1.7 diaminopimelate epimerase compare
PS417_13895 -0.8 -3.1 chemotaxis protein CheB compare
PS417_08620 -0.8 -1.1 hypothetical protein compare
PS417_00370 -0.8 -1.2 hypothetical protein compare
PS417_09245 -0.8 -1.6 recombinase RdgC compare
PS417_19800 -0.8 -2.1 flagellar motor switch protein FliG compare
PS417_19635 -0.8 -5.8 lipid kinase compare
PS417_17675 -0.8 -1.6 ABC transporter compare
PS417_18860 -0.8 -4.0 transcriptional regulator compare
PS417_20785 -0.8 -3.0 transcriptional regulator compare
PS417_15330 -0.8 -3.8 type VI secretion protein ImpA compare
PS417_07095 -0.8 -5.4 histidine kinase compare
PS417_20665 -0.8 -3.7 hypothetical protein compare
PS417_19675 -0.8 -1.1 chemotaxis protein CheY compare
PS417_16555 -0.8 -1.4 cupin compare
PS417_08580 -0.8 -4.0 histidine kinase compare
PS417_22190 -0.7 -4.9 diguanylate cyclase compare
PS417_00975 -0.7 -1.2 hypothetical protein compare
PS417_04590 -0.7 -3.7 methyltransferase compare
PS417_26445 -0.7 -2.4 ArsR family transcriptional regulator compare
PS417_12595 -0.7 -0.9 transcriptional regulator compare
PS417_14825 -0.7 -1.7 hypothetical protein compare
PS417_00045 -0.7 -2.0 glycerol acyltransferase compare
PS417_24605 -0.7 -2.1 thiamine-phosphate pyrophosphorylase compare
PS417_01600 -0.7 -3.4 peptidase M23 compare
PS417_20725 -0.7 -1.6 cbb3-type cytochrome c oxidase subunit II compare
PS417_16195 -0.7 -0.9 AraC family transcriptional regulator compare
PS417_15540 -0.7 -1.2 NUDIX hydrolase compare
PS417_17635 -0.7 -4.0 hemolysin secretion protein D compare
PS417_21760 -0.7 -1.2 hypothetical protein compare
PS417_19275 -0.7 -1.2 hypothetical protein compare
PS417_12730 -0.7 -1.6 glycosyltransferase compare
PS417_07120 -0.7 -4.3 RNA polymerase sigma-H factor compare
PS417_06100 -0.7 -1.5 SAM-dependent methyltransferase compare
PS417_22445 -0.7 -1.7 ATP-dependent DNA helicase RuvB compare
PS417_13425 -0.7 -1.3 cupin compare
PS417_18310 -0.7 -1.8 hypothetical protein compare
PS417_15110 -0.7 -3.6 protein BatD compare
PS417_08225 -0.7 -3.3 acetolactate synthase compare
PS417_27040 -0.7 -2.5 3-phosphoglycerate dehydrogenase compare
PS417_08125 -0.7 -0.8 prephenate dehydratase compare
PS417_10220 -0.7 -3.3 hypothetical protein compare
PS417_08200 -0.7 -1.7 hypothetical protein compare
PS417_02560 -0.7 -1.7 23S rRNA methyltransferase compare
PS417_12565 -0.7 -1.6 2-dehydro-3-deoxygluconokinase compare
PS417_09325 -0.7 -3.1 peptidase S41 compare
PS417_18300 -0.7 -2.6 transcriptional regulator compare
PS417_21850 -0.7 -1.0 LysR family transcriptional regulator compare
PS417_20635 -0.7 -0.8 ABC transporter ATP-binding protein compare
PS417_16855 -0.7 -1.2 cation:proton antiporter compare
PS417_12650 -0.7 -1.6 magnesium transporter compare
PS417_08945 -0.6 -4.2 heat shock protein 90 compare
PS417_20840 -0.6 -4.5 hypothetical protein compare
PS417_16715 -0.6 -1.4 DoxX family protein compare
PS417_12460 -0.6 -2.8 hypothetical protein compare
PS417_08190 -0.6 -4.5 membrane protein compare
PS417_13145 -0.6 -1.2 50S ribosomal protein L21 compare
PS417_20645 -0.6 -4.3 membrane protein compare
PS417_28515 -0.6 -2.8 16S rRNA methyltransferase compare
PS417_11720 -0.6 -1.7 class V aminotransferase compare
PS417_11090 -0.6 -2.2 LacI family transcriptional regulator compare
PS417_23025 -0.6 -3.5 murein transglycosylase compare
PS417_15225 -0.6 -1.8 alpha/beta hydrolase compare
PS417_15100 -0.6 -1.8 BatB protein compare
PS417_08245 -0.6 -0.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_05025 -0.6 -1.2 maleylacetoacetate isomerase compare
PS417_03785 -0.6 -0.9 pilus assembly protein PilV compare
PS417_10425 -0.6 -1.3 hypothetical protein compare
PS417_18445 -0.6 -1.4 glycerol-3-phosphatase compare
PS417_28340 -0.6 -1.4 hypothetical protein compare
PS417_07565 -0.6 -1.4 hypothetical protein compare
PS417_09995 -0.6 -1.7 regulatory protein compare
PS417_19515 -0.6 -2.8 histidine kinase compare
PS417_23215 -0.6 -2.2 RNA methyltransferase compare
PS417_09705 -0.6 -1.9 hypothetical protein compare
PS417_17240 -0.6 -2.3 trigger factor compare
PS417_05695 -0.6 -2.9 transcriptional regulator compare
PS417_20875 -0.6 -1.7 chromosome segregation protein SMC compare
PS417_22410 -0.6 -2.8 hypothetical protein compare
PS417_00310 -0.6 -2.4 cysteine synthase compare
PS417_15085 -0.6 -2.2 ATPase AAA compare
PS417_20660 -0.6 -3.6 hypothetical protein compare
PS417_08665 -0.6 -1.6 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_00345 -0.6 -1.6 copper-binding protein compare
PS417_27245 -0.6 -2.7 aminotransferase DegT compare
PS417_14120 -0.6 -3.7 molybdenum ABC transporter permease compare
PS417_03740 -0.6 -2.7 peptidylprolyl isomerase compare
PS417_00845 -0.6 -1.3 transcriptional regulator compare
PS417_19500 -0.6 -2.0 antibiotic synthesis protein MbtH compare
PS417_10575 -0.5 -1.9 DNA alkylation repair protein compare
PS417_16370 -0.5 -3.5 chemotaxis protein CheY compare
PS417_22565 -0.5 -1.0 formyltetrahydrofolate deformylase compare
PS417_24500 -0.5 -2.3 DEAD/DEAH box helicase compare
PS417_23820 -0.5 -2.7 hypothetical protein compare
PS417_23995 -0.5 -0.6 preprotein translocase subunit SecG compare
PS417_19995 -0.5 -3.6 Long-chain fatty acid transport protein compare
PS417_26175 -0.5 -0.8 sarcosine oxidase subunit gamma compare
PS417_11830 -0.5 -1.6 membrane protein compare
PS417_01915 -0.5 -0.7 ATP-dependent protease ATP-binding subunit HslU compare
PS417_22810 -0.5 -0.9 DNA base-flipping protein YbaZ compare
PS417_05960 -0.5 -2.0 chemotaxis protein compare
PS417_09915 -0.5 -0.8 hypothetical protein compare
PS417_28525 -0.5 -3.0 RNA polymerase sigma factor compare
PS417_18130 -0.5 -1.9 ABC transporter substrate-binding protein compare
PS417_08205 -0.5 -2.0 acetyltransferase compare
PS417_15405 -0.5 -3.0 glutathione S-transferase compare
PS417_24525 -0.5 -1.3 nuclease compare
PS417_13950 -0.5 -1.4 LuxR family transcriptional regulator compare
PS417_19145 -0.5 -3.8 membrane protein compare
PS417_20030 -0.5 -1.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_09330 -0.5 -1.8 NAD(P)H-quinone oxidoreductase compare
PS417_20700 -0.5 -3.8 cbb3-type cytochrome c oxidase subunit I compare
PS417_12670 -0.5 -1.4 hypothetical protein compare
PS417_26520 -0.5 -3.4 amino acid ABC transporter substrate-binding protein compare
PS417_09740 -0.5 -1.8 RNA polymerase subunit sigma-24 compare
PS417_11670 -0.5 -1.6 multidrug transporter MATE compare
PS417_21425 -0.5 -0.9 4-amino-4-deoxychorismate lyase compare
PS417_12290 -0.5 -3.1 sulfite reductase compare
PS417_02880 -0.5 -1.8 copper chaperone compare
PS417_09865 -0.5 -0.9 hypothetical protein compare
PS417_02225 -0.5 -1.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_06675 -0.5 -2.0 ATP-dependent helicase compare
PS417_22640 -0.5 -1.5 cytochrome C biogenesis protein CcmE compare
PS417_28190 -0.5 -1.6 amino acid ABC transporter substrate-binding protein compare
PS417_20655 -0.5 -3.5 group 1 glycosyl transferase compare
PS417_21700 -0.5 -1.9 arginine N-succinyltransferase compare
PS417_06865 -0.5 -1.1 transporter compare
PS417_17455 -0.5 -1.7 cytochrome C compare
PS417_07865 -0.5 -1.5 hypothetical protein compare
PS417_14940 -0.5 -1.1 LysR family transcriptional regulator compare
PS417_08180 -0.5 -3.2 glycosyl transferase compare
PS417_15780 -0.5 -1.4 membrane protein compare
PS417_15090 -0.5 -1.5 hypothetical protein compare
PS417_06400 -0.5 -1.9 succinylglutamate desuccinylase compare
PS417_00180 -0.5 -1.3 tryptophan synthase subunit alpha compare
PS417_23520 -0.5 -1.6 cysteine biosynthesis protein CysZ compare
PS417_03340 -0.5 -1.7 gluconate transporter compare
PS417_19610 -0.5 -1.4 molybdenum cofactor sulfurase compare
PS417_18850 -0.5 -2.4 hypothetical protein compare
PS417_22715 -0.5 -1.5 heme oxygenase compare
PS417_23625 -0.5 -1.3 LysR family transcriptional regulator compare
PS417_05135 -0.5 -2.9 nucleoid-associated protein compare
PS417_14915 -0.5 -0.9 host specificity protein compare
PS417_23605 -0.5 -1.8 permease DsdX compare
PS417_18915 -0.5 -1.0 hypothetical protein compare
PS417_08510 -0.5 -0.7 LysR family transcriptional regulator compare
PS417_15470 -0.5 -2.5 saccharopine dehydrogenase compare
PS417_25975 -0.5 -2.6 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_16825 -0.5 -2.2 membrane protein compare
PS417_06205 -0.5 -3.0 methionine aminopeptidase compare
PS417_07575 -0.5 -1.8 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_15305 -0.5 -1.3 type VI secretion protein compare
PS417_19520 -0.5 -1.1 transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Pseudomonas simiae WCS417 in stress experiments

For stress Sodium nitrate across organisms