Experiment set1IT006 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2867 -5.9 -4.6 glycerate kinase compare
EX28DRAFT_0325 -5.8 -3.0 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_2548 -5.6 -1.8 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_3643 -5.5 -2.2 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_2263 -5.3 -2.1 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_0329 -5.3 -4.6 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0331 -5.2 -1.5 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0323 -5.2 -2.4 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_0330 -5.2 -1.5 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_0324 -5.2 -1.7 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0334 -5.0 -1.4 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_0523 -5.0 -0.8 Glycosyltransferase like family 2 compare
EX28DRAFT_0327 -4.9 -4.8 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_4350 -4.8 -0.8 nitrogen regulation protein NR(I) compare
EX28DRAFT_0286 -4.8 -1.4 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_2724 -4.7 -1.3 RNA compare
EX28DRAFT_2272 -4.7 -10.2 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0129 -4.7 -0.8 RNA compare
EX28DRAFT_3172 -4.5 -6.6 Transcriptional regulator compare
EX28DRAFT_4380 -4.5 -0.7 Protein of unknown function (DUF1471) compare
EX28DRAFT_2027 -4.4 -2.8 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_0726 -4.4 -2.2 C-terminal peptidase (prc) compare
EX28DRAFT_3754 -4.3 -0.7 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_0321 -4.2 -0.7 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_2252 -4.2 -1.5 TolA protein compare
EX28DRAFT_3278 -4.1 -2.3 Glutathione S-transferase compare
EX28DRAFT_1398 -4.0 -1.8 hypothetical protein compare
EX28DRAFT_2270 -4.0 -0.6 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_4405 -3.9 -0.6 ATP-dependent protease HslVU, peptidase subunit compare
EX28DRAFT_2774 -3.9 -4.9 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_4156 -3.9 -1.1 ribulose-phosphate 3-epimerase compare
EX28DRAFT_2298 -3.8 -8.3 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_2985 -3.8 -4.9 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_0922 -3.8 -1.2 TonB family C-terminal domain compare
EX28DRAFT_1374 -3.7 -0.6 Short-chain dehydrogenases of various substrate specificities compare
EX28DRAFT_3073 -3.7 -4.2 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_2851 -3.7 -1.3 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_2348 -3.7 -0.6 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_4184 -3.7 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0322 -3.6 -5.0 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_2250 -3.6 -1.7 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0918 -3.5 -0.8 Ogr/Delta-like zinc finger compare
EX28DRAFT_0328 -3.4 -1.0 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_0333 -3.4 -5.0 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_1841 -3.4 -0.5 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_2864 -3.3 -5.1 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_3710 -3.3 -3.6 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_2846 -3.3 -3.7 adenylyl-sulfate kinase compare
EX28DRAFT_4386 -3.3 -1.9 Signal transduction histidine kinase compare
EX28DRAFT_0038 -3.2 -1.3 K+ transport systems, NAD-binding component compare
EX28DRAFT_3449 -3.2 -1.5 Predicted membrane protein compare
EX28DRAFT_2945 -3.2 -1.0 tyrosine recombinase XerD compare
EX28DRAFT_0693 -3.2 -0.7 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_3079 -3.1 -0.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3282 -3.0 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3675 -3.0 -6.2 transcriptional regulator, LacI family compare
EX28DRAFT_3045 -3.0 -2.6 tonB-system energizer ExbB compare
EX28DRAFT_0073 -3.0 -0.7 Negative regulator of sigma E activity compare
EX28DRAFT_4212 -3.0 -0.5 Acetyltransferase (GNAT) family compare
EX28DRAFT_2531 -3.0 -1.9 endopeptidase La compare
EX28DRAFT_0332 -3.0 -5.2 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_1383 -3.0 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2265 -2.9 -0.7 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_4271 -2.8 -0.5 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_0214 -2.8 -3.1 cysteine synthase A compare
EX28DRAFT_1650 -2.8 -1.0 ribonuclease T compare
EX28DRAFT_0706 -2.7 -1.5 Entner-Doudoroff aldolase compare
EX28DRAFT_4347 -2.7 -0.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3006 -2.7 -0.6 citrate lyase acyl carrier protein compare
EX28DRAFT_3311 -2.7 -0.6 ribosomal protein L11 methyltransferase compare
EX28DRAFT_4155 -2.6 -2.4 DNA adenine methylase (dam) compare
EX28DRAFT_4439 -2.6 -1.1 hypothetical protein compare
EX28DRAFT_1719 -2.6 -0.6 integration host factor, alpha subunit compare
EX28DRAFT_2721 -2.6 -1.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2240 -2.6 -1.4 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_3368 -2.5 -0.6 tRNA dimethylallyltransferase compare
EX28DRAFT_2264 -2.5 -4.8 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_2288 -2.5 -1.0 negative regulator of replication initiation SeqA compare
EX28DRAFT_0312 -2.5 -1.8 phosphate acetyltransferase compare
EX28DRAFT_0132 -2.5 -2.3 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_2299 -2.5 -7.5 Transcriptional regulator/sugar kinase compare
EX28DRAFT_0769 -2.5 -0.8 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_0111 -2.4 -0.9 FeS cluster assembly scaffold IscU compare
EX28DRAFT_3667 -2.4 -2.7 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_0948 -2.4 -0.8 hypothetical protein compare
EX28DRAFT_2958 -2.4 -0.5 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_0199 -2.4 -1.3 coproporphyrinogen oxidase (EC 1.3.3.3) compare
EX28DRAFT_1610 -2.4 -2.4 mannose-6-phosphate isomerase, type 1 (EC 5.3.1.8) compare
EX28DRAFT_0764 -2.4 -2.7 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_1771 -2.4 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2045 -2.3 -0.5 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_3883 -2.3 -2.4 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_4061 -2.3 -4.7 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_2148 -2.3 -7.4 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0068 -2.3 -0.7 autonomous glycyl radical cofactor GrcA compare
EX28DRAFT_2585 -2.3 -1.2 pyrroline-5-carboxylate reductase compare
EX28DRAFT_2651 -2.3 -4.0 glutamate 5-kinase compare
EX28DRAFT_3058 -2.2 -1.9 Signal transduction histidine kinase compare
EX28DRAFT_2540 -2.2 -2.5 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_0755 -2.2 -3.9 ribonuclease D compare
EX28DRAFT_4077 -2.2 -0.5 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_4452 -2.2 -1.3 thioredoxin compare
EX28DRAFT_0529 -2.2 -2.4 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_3137 -2.2 -0.8 Predicted transcriptional regulators compare
EX28DRAFT_0001 -2.2 -1.2 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_4152 -2.2 -0.7 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_2043 -2.2 -7.2 transcriptional regulator, AsnC family compare
EX28DRAFT_0897 -2.2 -0.6 P2-like prophage tail protein X compare
EX28DRAFT_0374 -2.1 -0.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4459 -2.1 -4.9 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_0843 -2.1 -1.2 nitrate ABC transporter, permease protein compare
EX28DRAFT_3711 -2.1 -0.5 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_4153 -2.1 -1.5 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_3173 -2.1 -5.2 Pirin-related protein compare
EX28DRAFT_0725 -2.1 -0.9 Activator of osmoprotectant transporter ProP compare
EX28DRAFT_3252 -2.1 -1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
EX28DRAFT_3645 -2.1 -2.1 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_1477 -2.1 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1009 -2.1 -1.0 hypothetical protein compare
EX28DRAFT_4191 -2.0 -1.5 small GTP-binding protein domain compare
EX28DRAFT_3418 -2.0 -0.6 Bacterial regulatory helix-turn-helix protein, lysR family compare
EX28DRAFT_2755 -2.0 -2.0 DNA-binding protein H-NS compare
EX28DRAFT_3597 -2.0 -1.4 DNA repair protein RadA compare
EX28DRAFT_3434 -2.0 -1.6 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_1402 -1.9 -1.4 Glyoxalase-like domain compare
EX28DRAFT_1692 -1.9 -0.7 Biofilm development protein YmgB/AriR compare
EX28DRAFT_0908 -1.9 -0.9 phage tail protein, P2 protein I family compare
EX28DRAFT_0521 -1.9 -2.6 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2701 -1.9 -5.3 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_4299 -1.9 -0.7 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
EX28DRAFT_1838 -1.9 -2.1 3-oxoacyl-(acyl-carrier-protein) synthase III compare
EX28DRAFT_1986 -1.9 -0.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_2268 -1.9 -5.2 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_3314 -1.9 -0.3 Factor for inversion stimulation Fis, transcriptional activator compare
EX28DRAFT_2938 -1.9 -0.9 tRNA compare
EX28DRAFT_3851 -1.8 -6.2 Transcriptional regulator compare
EX28DRAFT_1620 -1.8 -0.6 hypothetical protein compare
EX28DRAFT_4273 -1.8 -1.8 carbohydrate kinase, thermoresistant glucokinase family compare
EX28DRAFT_2787 -1.8 -2.0 ABC-type metal ion transport system, periplasmic component/surface adhesin compare
EX28DRAFT_2267 -1.8 -3.9 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_3647 -1.8 -2.2 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_0116 -1.8 -1.2 FeS assembly protein IscX compare
EX28DRAFT_3401 -1.8 -0.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_4327 -1.8 -2.0 transcriptional regulator, IclR family compare
EX28DRAFT_2974 -1.8 -3.1 transketolase, bacterial and yeast compare
EX28DRAFT_3259 -1.7 -2.2 Predicted P-loop-containing kinase compare
EX28DRAFT_3297 -1.7 -3.9 ribonuclease, Rne/Rng family compare
EX28DRAFT_3369 -1.7 -0.6 RNA chaperone Hfq compare
EX28DRAFT_1417 -1.7 -2.0 phenylacetate-CoA oxygenase, PaaJ subunit compare
EX28DRAFT_2543 -1.7 -2.5 protoheme IX farnesyltransferase compare
EX28DRAFT_3987 -1.7 -5.4 DNA replication and repair protein RecF compare
EX28DRAFT_4461 -1.7 -2.8 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_3900 -1.7 -1.2 SpoU rRNA Methylase family/SpoU, rRNA methylase, C-terminal compare
EX28DRAFT_2845 -1.7 -1.1 Protein of unknown function (DUF3561) compare
EX28DRAFT_2853 -1.7 -3.4 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_2650 -1.7 -4.1 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_2050 -1.7 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_0673 -1.7 -5.9 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain compare
EX28DRAFT_2269 -1.7 -3.4 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_3285 -1.7 -2.8 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_0166 -1.7 -7.6 polyphosphate kinase 1 compare
EX28DRAFT_4348 -1.6 -1.2 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_3825 -1.6 -1.7 YsaB-like lipoprotein compare
EX28DRAFT_3901 -1.6 -3.6 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_4478 -1.6 -2.7 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_2839 -1.6 -6.5 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
EX28DRAFT_2046 -1.6 -1.0 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_1192 -1.6 -3.0 Acetyltransferase (GNAT) family compare
EX28DRAFT_2963 -1.6 -2.6 RNA compare
EX28DRAFT_3185 -1.6 -1.7 transcriptional regulator, DeoR family compare
EX28DRAFT_4018 -1.6 -0.8 Flavodoxins compare
EX28DRAFT_2993 -1.6 -1.5 putative oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_2677 -1.6 -0.7 hypothetical protein compare
EX28DRAFT_2539 -1.5 -2.2 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_0687 -1.5 -1.3 tRNA (cmo5U34)-methyltransferase compare
EX28DRAFT_0155 -1.5 -2.7 Sugar phosphate isomerases/epimerases compare
EX28DRAFT_1700 -1.5 -0.7 hypothetical protein compare
EX28DRAFT_2720 -1.5 -5.2 Small protein A (tmRNA-binding) compare
EX28DRAFT_2118 -1.5 -0.7 arsenate reductase (glutaredoxin) compare
EX28DRAFT_1414 -1.5 -0.6 phenylacetate degradation probable enoyl-CoA hydratase paaB compare
EX28DRAFT_3217 -1.5 -5.1 tRNA pseudouridine(55) synthase compare
EX28DRAFT_1056 -1.5 -0.6 ABC-type polar amino acid transport system, ATPase component compare
EX28DRAFT_3507 -1.5 -0.8 Response regulator compare
EX28DRAFT_4479 -1.5 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3566 -1.5 -1.1 Uncharacterized conserved protein compare
EX28DRAFT_2271 -1.5 -2.6 hypothetical protein compare
EX28DRAFT_1959 -1.5 -1.0 Acyl carrier protein compare
EX28DRAFT_1342 -1.5 -0.8 hypothetical protein compare
EX28DRAFT_1252 -1.5 -0.6 TIGR00156 family protein compare
EX28DRAFT_2852 -1.5 -4.0 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_0092 -1.5 -1.2 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_0313 -1.4 -2.7 acetate kinase compare
EX28DRAFT_2287 -1.4 -3.7 phosphoglucomutase, alpha-D-glucose phosphate-specific compare
EX28DRAFT_4446 -1.4 -5.4 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_0221 -1.4 -1.3 FlxA-like protein compare
EX28DRAFT_2213 -1.4 -2.0 dethiobiotin synthase compare
EX28DRAFT_0108 -1.4 -0.5 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_0833 -1.4 -1.7 Uncharacterized conserved protein compare
EX28DRAFT_2893 -1.4 -3.1 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_0857 -1.4 -0.6 tRNA compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days in Enterobacter asburiae PDN3

For in planta Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days across organisms