Experiment set1IT005 for Pseudomonas fluorescens GW456-L13

Compare to:

D-Galactose carbon source

200 most important genes:

  gene name fitness t score description  
PfGW456L13_362 -5.9 -4.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
PfGW456L13_361 -5.8 -5.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
PfGW456L13_1219 -5.8 -4.0 hypothetical protein compare
PfGW456L13_644 -5.7 -4.0 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
PfGW456L13_3934 -5.7 -4.0 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) compare
PfGW456L13_149 -5.6 -3.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
PfGW456L13_1007 -5.6 -3.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
PfGW456L13_172 -5.6 -5.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
PfGW456L13_359 -5.5 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PfGW456L13_1472 -5.4 -3.8 Glutamate 5-kinase (EC 2.7.2.11) / RNA-binding C-terminal domain PUA compare
PfGW456L13_2127 -5.4 -3.8 2-dehydro-3-deoxyphosphogalactonate aldolase (EC 4.1.2.21) compare
PfGW456L13_2842 -5.3 -3.7 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
PfGW456L13_303 -5.3 -3.6 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PfGW456L13_358 -5.2 -3.1 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
PfGW456L13_5001 -5.2 -3.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PfGW456L13_3948 -5.2 -3.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
PfGW456L13_1540 -5.2 -3.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
PfGW456L13_3940 -5.2 -3.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
PfGW456L13_1217 -5.2 -14.9 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
PfGW456L13_3947 -5.2 -3.6 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
PfGW456L13_951 -5.1 -9.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
PfGW456L13_1368 -5.1 -3.6 Muramoyltetrapeptide carboxypeptidase (EC 3.4.17.13) compare
PfGW456L13_5011 -5.1 -3.5 Uncharacterized protein YrbK clustered with lipopolysaccharide transporters compare
PfGW456L13_2128 -5.1 -6.1 Galactonate dehydratase (EC 4.2.1.6) conserved
PfGW456L13_302 -5.1 -5.0 Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) compare
PfGW456L13_1644 -5.1 -3.5 Cell division protein MraZ compare
PfGW456L13_1221 -5.0 -14.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
PfGW456L13_1010 -5.0 -4.8 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
PfGW456L13_1050 -5.0 -3.4 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) compare
PfGW456L13_1222 -4.9 -4.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
PfGW456L13_5000 -4.9 -10.9 Histidinol dehydrogenase (EC 1.1.1.23) compare
PfGW456L13_1539 -4.8 -5.7 Acetolactate synthase small subunit (EC 2.2.1.6) compare
PfGW456L13_845 -4.8 -3.3 Diaminopimelate decarboxylase (EC 4.1.1.20) compare
PfGW456L13_913 -4.7 -4.6 N-acetylglutamate synthase (EC 2.3.1.1) compare
PfGW456L13_973 -4.7 -10.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
PfGW456L13_1524 -4.6 -3.2 Two-component sensor CbrB: intrcellular carbon:nitrogen balance compare
PfGW456L13_1739 -4.6 -4.5 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
PfGW456L13_2119 -4.6 -5.4 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) conserved
PfGW456L13_2126 -4.5 -5.4 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) conserved
PfGW456L13_2843 -4.4 -6.8 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
PfGW456L13_1538 -4.4 -5.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
PfGW456L13_2656 -4.4 -5.2 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
PfGW456L13_4671 -4.4 -11.3 Transcriptional regulator, Cro/CI family compare
PfGW456L13_1233 -4.3 -3.0 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
PfGW456L13_150 -4.3 -2.5 hypothetical protein compare
PfGW456L13_1615 -4.3 -2.1 Probable transmembrane protein compare
PfGW456L13_4165 -4.3 -3.0 Chorismate synthase (EC 4.2.3.5) compare
PfGW456L13_2553 -4.3 -7.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
PfGW456L13_3795 -4.2 -7.6 sensor histidine kinase compare
PfGW456L13_3960 -4.2 -9.8 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
PfGW456L13_3945 -4.2 -10.6 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
PfGW456L13_2046 -4.2 -5.0 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
PfGW456L13_943 -4.1 -9.2 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
PfGW456L13_2623 -4.1 -2.8 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
PfGW456L13_2032 -4.1 -4.0 Cysteine synthase B (EC 2.5.1.47) compare
PfGW456L13_4253 -4.0 -3.8 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
PfGW456L13_5121 -4.0 -1.4 hypothetical protein compare
PfGW456L13_2237 -3.9 -2.7 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_3315 -3.9 -3.4 FIG00955242: hypothetical protein compare
PfGW456L13_1220 -3.9 -6.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
PfGW456L13_1020 -3.9 -6.9 Ferric siderophore transport system, periplasmic binding protein TonB compare
PfGW456L13_4854 -3.8 -12.5 2-isopropylmalate synthase (EC 2.3.3.13) compare
PfGW456L13_2552 -3.8 -4.6 ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) compare
PfGW456L13_2230 -3.8 -7.6 Cys regulon transcriptional activator CysB compare
PfGW456L13_566 -3.8 -6.3 Tryptophan synthase beta chain (EC 4.2.1.20) compare
PfGW456L13_3398 -3.7 -4.4 Transcriptional regulator, TetR family compare
PfGW456L13_854 -3.7 -2.6 Argininosuccinate lyase (EC 4.3.2.1) compare
PfGW456L13_1006 -3.7 -5.8 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
PfGW456L13_656 -3.7 -2.6 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
PfGW456L13_1580 -3.7 -5.6 FIG140336: TPR domain protein compare
PfGW456L13_1147 -3.7 -13.0 Biotin synthase (EC 2.8.1.6) compare
PfGW456L13_1972 -3.7 -2.5 Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) compare
PfGW456L13_1852 -3.7 -4.3 Holliday junction DNA helicase RuvA compare
PfGW456L13_1842 -3.6 -8.1 Outer membrane porin, OprD family compare
PfGW456L13_953 -3.6 -11.6 FIG001592: Phosphocarrier protein kinase/phosphorylase, nitrogen regulation associated compare
PfGW456L13_3179 -3.5 -3.4 Organic hydroperoxide resistance transcriptional regulator compare
PfGW456L13_5150 -3.5 -2.4 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
PfGW456L13_1205 -3.5 -7.7 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
PfGW456L13_1824 -3.4 -2.3 transcriptional regulator MvaT, P16 subunit compare
PfGW456L13_2176 -3.4 -6.3 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
PfGW456L13_5046 -3.4 -7.6 Predicted D-glucarate or D-galactorate regulator, GntR family compare
PfGW456L13_5067 -3.4 -10.1 Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19) compare
PfGW456L13_4125 -3.4 -3.0 Phosphoadenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.8) / Adenylyl-sulfate reductase [thioredoxin] (EC 1.8.4.10) compare
PfGW456L13_1749 -3.4 -3.3 Argininosuccinate synthase (EC 6.3.4.5) compare
PfGW456L13_4859 -3.3 -2.3 Outer membrane protein YfgL, lipoprotein component of the protein assembly complex (forms a complex with YaeT, YfiO, and NlpB) compare
PfGW456L13_2597 -3.3 -5.8 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
PfGW456L13_3517 -3.3 -6.7 Aldehyde dehydrogenase (EC 1.2.1.3) compare
PfGW456L13_2084 -3.3 -2.5 MotA/TolQ/ExbB proton channel family protein compare
PfGW456L13_565 -3.3 -4.8 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
PfGW456L13_1853 -3.3 -4.3 Holliday junction DNA helicase RuvB compare
PfGW456L13_1603 -3.2 -2.8 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
PfGW456L13_1845 -3.2 -2.2 Cold shock protein CspC compare
PfGW456L13_2551 -3.2 -3.8 Cell division trigger factor (EC 5.2.1.8) compare
PfGW456L13_2130 -3.2 -8.6 Hexuronate transporter conserved
PfGW456L13_276 -3.2 -1.5 Shikimate kinase I (EC 2.7.1.71) compare
PfGW456L13_2981 -3.1 -1.5 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) compare
PfGW456L13_1847 -3.1 -1.4 Glycerate kinase (EC 2.7.1.31) compare
PfGW456L13_591 -3.1 -4.6 Cytochrome c4 compare
PfGW456L13_2651 -3.1 -4.2 Cell division protein FtsK compare
PfGW456L13_4598 -3.1 -1.5 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
PfGW456L13_1363 -3.0 -6.0 Rare lipoprotein A precursor compare
PfGW456L13_5006 -3.0 -2.1 Uncharacterized ABC transporter, periplasmic component YrbD compare
PfGW456L13_4012 -3.0 -2.0 VacJ-like lipoprotein precursor compare
PfGW456L13_275 -2.9 -2.0 3-dehydroquinate synthase (EC 4.2.3.4) compare
PfGW456L13_5008 -2.9 -2.0 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
PfGW456L13_1735 -2.8 -2.0 Glycerol uptake facilitator protein compare
PfGW456L13_1863 -2.8 -8.0 Quinolinate synthetase (EC 2.5.1.72) compare
PfGW456L13_729 -2.8 -9.9 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
PfGW456L13_1011 -2.8 -3.0 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC compare
PfGW456L13_1574 -2.7 -2.6 GTP-binding and nucleic acid-binding protein YchF compare
PfGW456L13_1635 -2.7 -11.0 Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2) compare
PfGW456L13_1148 -2.7 -12.6 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
PfGW456L13_727 -2.6 -6.3 LysR family transcriptional regulator PA5437 compare
PfGW456L13_2436 -2.6 -4.3 Phenylacetic acid degradation operon negative regulatory protein PaaX compare
PfGW456L13_360 -2.6 -2.7 FIG00956267: hypothetical protein compare
PfGW456L13_1838 -2.6 -4.3 Sensory box histidine kinase compare
PfGW456L13_5082 -2.6 -6.1 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
PfGW456L13_728 -2.6 -10.2 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
PfGW456L13_4917 -2.5 -4.6 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
PfGW456L13_3894 -2.5 -1.7 Integration host factor alpha subunit compare
PfGW456L13_1044 -2.5 -10.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
PfGW456L13_1896 -2.5 -8.8 ABC transporter for D-Galactose and D-Glucose, permease component 2 (from data) compare
PfGW456L13_3531 -2.5 -12.7 Sensory box histidine kinase/response regulator compare
PfGW456L13_329 -2.5 -3.1 Histidine utilization repressor compare
PfGW456L13_50 -2.5 -6.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
PfGW456L13_3532 -2.5 -8.9 FIG00955631: hypothetical protein compare
PfGW456L13_482 -2.4 -2.3 FIG028593: membrane protein compare
PfGW456L13_4709 -2.4 -3.0 hypothetical protein compare
PfGW456L13_1151 -2.3 -7.8 Dethiobiotin synthetase (EC 6.3.3.3) compare
PfGW456L13_4576 -2.3 -1.9 Transcriptional regulator, ArsR family compare
PfGW456L13_1636 -2.3 -7.6 ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit compare
PfGW456L13_1213 -2.3 -5.3 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
PfGW456L13_756 -2.3 -5.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
PfGW456L13_155 -2.3 -5.4 tRNA dimethylallyltransferase (EC 2.5.1.75) compare
PfGW456L13_1655 -2.3 -2.1 D-alanine--D-alanine ligase (EC 6.3.2.4) compare
PfGW456L13_3314 -2.3 -5.7 D-galactono-lactonase (EC 3.1.1.-) (from data) compare
PfGW456L13_5152 -2.3 -3.4 Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) compare
PfGW456L13_355 -2.3 -4.8 Carboxyl-terminal protease (EC 3.4.21.102) compare
PfGW456L13_757 -2.2 -1.8 Phosphate transport system regulatory protein PhoU compare
PfGW456L13_2250 -2.2 -8.9 Probable protease htpX homolog (EC 3.4.24.-) compare
PfGW456L13_59 -2.2 -5.5 Sensor histidine kinase/response regulator compare
PfGW456L13_151 -2.2 -3.3 HflC protein compare
PfGW456L13_4108 -2.2 -2.2 CrfX protein compare
PfGW456L13_3289 -2.2 -1.5 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
PfGW456L13_952 -2.2 -4.8 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) compare
PfGW456L13_4842 -2.2 -2.9 Translation elongation factor LepA compare
PfGW456L13_4207 -2.2 -5.9 Periplasmic protease compare
PfGW456L13_1891 -2.2 -6.3 DNA-binding response regulator GltR, controls specific porins for the entry of glucose compare
PfGW456L13_1525 -2.1 -9.0 Two-component sensor CbrA: intrcellular carbon:nitrogen balance compare
PfGW456L13_4258 -2.1 -7.7 Chaperone protein HtpG compare
PfGW456L13_247 -2.1 -2.6 FIG022199: FAD-binding protein compare
PfGW456L13_4882 -2.1 -3.1 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
PfGW456L13_3124 -2.1 -1.9 hypothetical protein compare
PfGW456L13_1150 -2.1 -9.4 Biotin synthesis protein BioC compare
PfGW456L13_2768 -2.1 -2.3 FIG00959468: hypothetical protein compare
PfGW456L13_2707 -2.1 -1.2 FIG00953208: hypothetical protein compare
PfGW456L13_2984 -2.1 -2.9 Enoyl-CoA hydratase [valine degradation] (EC 4.2.1.17) compare
PfGW456L13_3445 -2.0 -2.7 hypothetical protein compare
PfGW456L13_1634 -2.0 -6.2 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
PfGW456L13_1895 -2.0 -9.4 ABC transporter for D-Galactose and D-Glucose, permease component 1 (from data) conserved
PfGW456L13_73 -2.0 -1.8 FIG00955840: hypothetical protein compare
PfGW456L13_4069 -2.0 -5.6 Heavy-metal-associated domain (N-terminus) and membrane-bounded cytochrome biogenesis cycZ-like domain, possible membrane copper tolerance protein compare
PfGW456L13_4088 -2.0 -2.3 Transcriptional regulator, GntR family compare
PfGW456L13_4033 -2.0 -1.7 Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family compare
PfGW456L13_4513 -2.0 -2.0 HtrA protease/chaperone protein compare
PfGW456L13_581 -2.0 -1.8 hypothetical protein compare
PfGW456L13_5005 -2.0 -3.2 Uncharacterized ABC transporter, auxiliary component YrbC compare
PfGW456L13_4007 -2.0 -2.2 Phosphomannomutase (EC 5.4.2.8) compare
PfGW456L13_427 -1.9 -1.8 Two-component system response regulator OmpR compare
PfGW456L13_4346 -1.9 -2.9 Hpt domain protein compare
PfGW456L13_2969 -1.9 -1.5 FIG00956898: hypothetical protein compare
PfGW456L13_4517 -1.9 -9.8 L-aspartate oxidase (EC 1.4.3.16) compare
PfGW456L13_1897 -1.9 -6.8 ABC transporter for D-Galactose and D-Glucose, ATPase component (from data) compare
PfGW456L13_1009 -1.9 -1.9 Integral membrane protein YggT, involved in response to extracytoplasmic stress (osmotic shock) compare
PfGW456L13_2664 -1.8 -3.2 FIG00957702: hypothetical protein compare
PfGW456L13_1528 -1.8 -2.3 C4-type zinc finger protein, DksA/TraR family compare
PfGW456L13_2385 -1.8 -1.8 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
PfGW456L13_5060 -1.8 -4.0 Peptide chain release factor 3 compare
PfGW456L13_2143 -1.8 -1.6 Translation initiation factor 2 (IF-2; GTPase) compare
PfGW456L13_2632 -1.8 -2.8 NADH-ubiquinone oxidoreductase chain B (EC 1.6.5.3) compare
PfGW456L13_2268 -1.8 -2.3 Thiol-disulfide isomerase and thioredoxins compare
PfGW456L13_4677 -1.7 -9.0 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
PfGW456L13_779 -1.7 -7.3 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
PfGW456L13_1854 -1.7 -2.0 4-hydroxybenzoyl-CoA thioesterase family active site compare
PfGW456L13_4254 -1.7 -4.9 FIG00955360: hypothetical protein compare
PfGW456L13_4227 -1.7 -4.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
PfGW456L13_1997 -1.7 -3.8 Negative regulator of flagellin synthesis FlgM compare
PfGW456L13_4607 -1.7 -1.9 hypothetical protein compare
PfGW456L13_4668 -1.7 -4.0 RecA protein compare
PfGW456L13_4834 -1.7 -1.0 FIG137478: Hypothetical protein compare
PfGW456L13_152 -1.7 -3.9 HflK protein compare
PfGW456L13_1883 -1.7 -2.0 Heme oxygenase HemO, associated with heme uptake compare
PfGW456L13_1894 -1.7 -5.6 ABC transporter for D-Galactose and D-Glucose, periplasmic substrate-binding component (from data) conserved
PfGW456L13_4015 -1.6 -2.9 NADPH dependent preQ0 reductase (EC 1.7.1.13) compare
PfGW456L13_1734 -1.6 -5.7 Glycerol kinase (EC 2.7.1.30) compare
PfGW456L13_4365 -1.6 -2.8 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.180) compare
PfGW456L13_777 -1.6 -6.3 Nucleoside-diphosphate-sugar epimerases compare
PfGW456L13_1359 -1.6 -1.6 LSU m3Psi1915 methyltransferase RlmH compare
PfGW456L13_726 -1.6 -4.3 Phosphogluconate repressor HexR, RpiR family compare
PfGW456L13_2760 -1.6 -2.4 hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Galactose in Pseudomonas fluorescens GW456-L13

For carbon source D-Galactose across organisms