Experiment set1IT005 for Variovorax sp. OAS795

Compare to:

D-Arabinose carbon source

200 most important genes:

  gene name fitness t score description  
ABID97_RS07135 -7.0 -4.9 L-iditol 2-dehydrogenase conserved
ABID97_RS06575 -6.0 -4.2 trehalose-phosphatase compare
ABID97_RS23225 -5.7 -7.8 glutamate synthase-related protein compare
ABID97_RS16600 -5.3 -6.4 CysB family HTH-type transcriptional regulator compare
ABID97_RS05800 -5.0 -10.5 altronate dehydratase family protein conserved
ABID97_RS01565 -5.0 -11.0 DNA starvation/stationary phase protection protein compare
ABID97_RS20615 -4.4 -8.8 uroporphyrinogen-III C-methyltransferase compare
ABID97_RS05260 -4.3 -1.7 aminodeoxychorismate/anthranilate synthase component II compare
ABID97_RS02420 -4.2 -8.8 protealysin inhibitor emfourin compare
ABID97_RS14095 -4.1 -8.4 PAS domain S-box protein compare
ABID97_RS16595 -4.0 -5.1 CbiX/SirB N-terminal domain-containing protein compare
ABID97_RS09180 -3.6 -2.5 DNA polymerase I compare
ABID97_RS17895 -3.6 -6.3 transcriptional regulator NrdR compare
ABID97_RS15380 -3.6 -9.9 nitrite/sulfite reductase compare
ABID97_RS08425 -3.6 -3.5 tryptophan synthase subunit alpha compare
ABID97_RS07415 -3.5 -11.4 quinolinate synthase NadA compare
ABID97_RS19760 -3.3 -3.2 ROK family transcriptional regulator compare
ABID97_RS23425 -3.3 -2.3 tRNA-Pro compare
ABID97_RS24920 -3.3 -2.2 Holliday junction branch migration protein RuvA compare
ABID97_RS07405 -3.2 -10.0 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABID97_RS07430 -3.2 -8.5 pantoate--beta-alanine ligase compare
ABID97_RS19025 -3.2 -1.3 tripartite tricarboxylate transporter substrate binding protein compare
ABID97_RS25015 -3.2 -2.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABID97_RS07410 -3.1 -4.6 carboxylating nicotinate-nucleotide diphosphorylase compare
ABID97_RS23220 -2.9 -1.5 glutamate synthase subunit beta compare
ABID97_RS05365 -2.9 -2.8 DUF4390 domain-containing protein compare
ABID97_RS24170 -2.9 -5.8 ATP-binding protein compare
ABID97_RS13990 -2.9 -2.8 amino acid aminotransferase compare
ABID97_RS05250 -2.9 -6.9 anthranilate synthase component I compare
ABID97_RS02600 -2.9 -2.0 homoserine O-acetyltransferase compare
ABID97_RS18495 -2.8 -1.6 DUF2889 domain-containing protein compare
ABID97_RS13860 -2.8 -7.6 hypothetical protein compare
ABID97_RS07000 -2.8 -9.2 threonine ammonia-lyase, biosynthetic compare
ABID97_RS03680 -2.8 -7.3 lysophospholipid transporter LplT compare
ABID97_RS03110 -2.7 -6.2 helix-turn-helix transcriptional regulator compare
ABID97_RS18030 -2.7 -2.6 tRNA (guanosine(46)-N7)-methyltransferase TrmB compare
ABID97_RS08775 -2.7 -1.9 ribosome small subunit-dependent GTPase A compare
ABID97_RS10885 -2.7 -6.0 pyridoxal phosphate-dependent aminotransferase compare
ABID97_RS07440 -2.7 -13.1 L-aspartate oxidase compare
ABID97_RS06345 -2.7 -2.6 3-deoxy-7-phosphoheptulonate synthase compare
ABID97_RS21150 -2.7 -9.2 FAD-dependent oxidoreductase compare
ABID97_RS10705 -2.7 -3.7 H-NS histone family protein compare
ABID97_RS09565 -2.6 -2.0 hypothetical protein compare
ABID97_RS12180 -2.6 -1.8 hypothetical protein compare
ABID97_RS16535 -2.6 -7.4 arginine/lysine/ornithine decarboxylase compare
ABID97_RS17600 -2.6 -1.8 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABID97_RS23915 -2.6 -3.5 heme o synthase compare
ABID97_RS05275 -2.5 -1.7 anthranilate phosphoribosyltransferase compare
ABID97_RS02510 -2.5 -18.4 NADP-dependent malic enzyme compare
ABID97_RS20520 -2.5 -1.9 polyribonucleotide nucleotidyltransferase compare
ABID97_RS03805 -2.5 -1.4 ATP-binding protein compare
ABID97_RS17595 -2.5 -7.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABID97_RS17265 -2.4 -3.5 two-component system response regulator OmpR compare
ABID97_RS16985 -2.4 -3.7 transcriptional repressor LexA compare
ABID97_RS15665 -2.4 -5.4 [protein-PII] uridylyltransferase compare
ABID97_RS16065 -2.4 -1.9 PDR/VanB family oxidoreductase compare
ABID97_RS23440 -2.4 -10.8 A24 family peptidase compare
ABID97_RS04855 -2.4 -3.5 CinA family protein compare
ABID97_RS04760 -2.3 -1.6 SPOR domain-containing protein compare
ABID97_RS05370 -2.3 -3.8 ATP-binding protein compare
ABID97_RS07130 -2.3 -4.9 D-arabinitol 4-dehydrogenase compare
ABID97_RS16690 -2.3 -5.0 peptidoglycan-associated lipoprotein Pal compare
ABID97_RS17970 -2.3 -5.5 protein TolQ compare
ABID97_RS00585 -2.3 -10.4 TlpA disulfide reductase family protein compare
ABID97_RS03125 -2.2 -9.5 benzoyl-CoA 2,3-epoxidase subunit BoxA compare
ABID97_RS24055 -2.2 -3.3 TetR/AcrR family transcriptional regulator compare
ABID97_RS02455 -2.2 -3.1 nucleotidyltransferase family protein compare
ABID97_RS00255 -2.2 -11.4 type IV pilus twitching motility protein PilT compare
ABID97_RS24705 -2.2 -4.4 response regulator compare
ABID97_RS25085 -2.2 -3.2 2-hydroxychromene-2-carboxylate isomerase compare
ABID97_RS06190 -2.1 -3.6 division/cell wall cluster transcriptional repressor MraZ compare
ABID97_RS18255 -2.1 -1.6 hypothetical protein compare
ABID97_RS02110 -2.1 -11.8 type IV pilus modification protein PilV compare
ABID97_RS14665 -2.1 -2.0 UvrD-helicase domain-containing protein compare
ABID97_RS23435 -2.1 -12.2 type II secretion system F family protein compare
ABID97_RS06275 -2.1 -1.4 crossover junction endodeoxyribonuclease RuvC compare
ABID97_RS04605 -2.1 -10.7 glutamate--cysteine ligase compare
ABID97_RS23455 -2.0 -2.7 hypothetical protein compare
ABID97_RS20020 -2.0 -2.3 LacI family DNA-binding transcriptional regulator compare
ABID97_RS22055 -2.0 -2.1 LysR substrate-binding domain-containing protein compare
ABID97_RS15375 -2.0 -3.0 DUF934 domain-containing protein compare
ABID97_RS02115 -1.9 -7.5 PilW family protein compare
ABID97_RS04960 -1.9 -1.1 ATP-binding protein compare
ABID97_RS02125 -1.9 -14.4 PilC/PilY family type IV pilus protein compare
ABID97_RS16695 -1.9 -10.5 Tol-Pal system beta propeller repeat protein TolB compare
ABID97_RS23940 -1.9 -4.0 cytochrome c oxidase subunit 3 compare
ABID97_RS02120 -1.9 -8.4 PilX N-terminal domain-containing pilus assembly protein compare
ABID97_RS05280 -1.9 -1.3 indole-3-glycerol phosphate synthase TrpC compare
ABID97_RS14625 -1.9 -3.9 phosphate regulon sensor histidine kinase PhoR compare
ABID97_RS17850 -1.9 -0.9 tetratricopeptide repeat protein compare
ABID97_RS25900 -1.9 -1.7 ABC transporter permease compare
ABID97_RS08710 -1.9 -5.6 polynucleotide adenylyltransferase PcnB compare
ABID97_RS06365 -1.8 -1.6 TlpA disulfide reductase family protein compare
ABID97_RS02460 -1.8 -11.0 aminopeptidase P N-terminal domain-containing protein compare
ABID97_RS18580 -1.8 -1.7 CoA transferase compare
ABID97_RS28635 -1.8 -2.6 IclR family transcriptional regulator compare
ABID97_RS26160 -1.8 -1.2 nuclear transport factor 2 family protein compare
ABID97_RS07435 -1.8 -5.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
ABID97_RS24045 -1.8 -3.8 type II toxin-antitoxin system prevent-host-death family antitoxin compare
ABID97_RS07500 -1.8 -2.0 iron-sulfur cluster carrier protein ApbC compare
ABID97_RS06600 -1.8 -3.2 5-formyltetrahydrofolate cyclo-ligase compare
ABID97_RS06150 -1.7 -5.2 tyrosine recombinase XerC compare
ABID97_RS23430 -1.7 -9.2 type IV-A pilus assembly ATPase PilB compare
ABID97_RS03910 -1.7 -1.2 orotate phosphoribosyltransferase compare
ABID97_RS01840 -1.7 -10.1 DUF1631 family protein compare
ABID97_RS08435 -1.7 -1.2 phosphoribosylanthranilate isomerase compare
ABID97_RS15995 -1.7 -4.4 PilZ domain-containing protein compare
ABID97_RS10295 -1.7 -1.5 winged helix-turn-helix transcriptional regulator compare
ABID97_RS02145 -1.7 -7.4 DegT/DnrJ/EryC1/StrS family aminotransferase compare
ABID97_RS23965 -1.7 -8.1 cytochrome c oxidase subunit II compare
ABID97_RS08220 -1.7 -8.6 phosphoenolpyruvate carboxylase compare
ABID97_RS23950 -1.7 -9.3 cytochrome c oxidase assembly protein compare
ABID97_RS23270 -1.7 -7.7 pilus assembly protein PilP compare
ABID97_RS24690 -1.7 -8.5 methyl-accepting chemotaxis protein compare
ABID97_RS06315 -1.7 -9.8 YqiA/YcfP family alpha/beta fold hydrolase compare
ABID97_RS07775 -1.7 -3.6 phosphoribosylglycinamide formyltransferase compare
ABID97_RS09595 -1.7 -1.9 Arc family DNA-binding protein compare
ABID97_RS23330 -1.7 -5.7 c-type cytochrome compare
ABID97_RS09935 -1.6 -6.1 hypothetical protein compare
ABID97_RS23450 -1.6 -3.3 MBOAT family protein compare
ABID97_RS14105 -1.6 -2.2 dihydrolipoyllysine-residue acetyltransferase compare
ABID97_RS02135 -1.6 -4.1 GspH/FimT family pseudopilin compare
ABID97_RS23320 -1.6 -5.8 c-type cytochrome biogenesis protein CcsB compare
ABID97_RS14100 -1.6 -7.8 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
ABID97_RS03800 -1.6 -1.6 O-antigen ligase family protein compare
ABID97_RS02130 -1.6 -8.6 type IV pilin protein compare
ABID97_RS19065 -1.6 -5.3 GntR family transcriptional regulator compare
ABID97_RS17200 -1.6 -11.2 ribonuclease R compare
ABID97_RS23960 -1.6 -10.8 cytochrome c oxidase subunit I compare
ABID97_RS06415 -1.6 -9.1 sigma-54 dependent transcriptional regulator compare
ABID97_RS10695 -1.6 -4.7 YbhB/YbcL family Raf kinase inhibitor-like protein compare
ABID97_RS02140 -1.6 -6.2 sugar transferase compare
ABID97_RS06060 -1.6 -1.4 hypothetical protein compare
ABID97_RS01595 -1.6 -3.7 tRNA guanosine(34) transglycosylase Tgt compare
ABID97_RS05755 -1.6 -1.8 glycosyltransferase compare
ABID97_RS03915 -1.6 -6.0 DUF4124 domain-containing protein compare
ABID97_RS06175 -1.5 -10.6 STAS domain-containing protein compare
ABID97_RS04500 -1.5 -1.1 HPr(Ser) kinase/phosphatase compare
ABID97_RS27235 -1.5 -1.3 hypothetical protein compare
ABID97_RS23935 -1.5 -1.6 twin transmembrane helix small protein compare
ABID97_RS16315 -1.5 -2.5 hypothetical protein compare
ABID97_RS20265 -1.5 -2.6 site-specific tyrosine recombinase XerD compare
ABID97_RS24770 -1.5 -7.6 LacI family DNA-binding transcriptional regulator compare
ABID97_RS08130 -1.5 -1.2 DUF3297 family protein compare
ABID97_RS23920 -1.5 -4.7 COX15/CtaA family protein compare
ABID97_RS29030 -1.4 -1.4 3-isopropylmalate dehydratase small subunit compare
ABID97_RS02605 -1.4 -7.1 TMEM165/GDT1 family protein compare
ABID97_RS01825 -1.4 -8.0 LysM peptidoglycan-binding domain-containing protein compare
ABID97_RS10685 -1.4 -5.0 hypothetical protein compare
ABID97_RS17590 -1.4 -8.4 endopeptidase La compare
ABID97_RS23650 -1.4 -9.9 serine/threonine-protein kinase compare
ABID97_RS10355 -1.4 -6.3 FadR/GntR family transcriptional regulator compare
ABID97_RS09800 -1.4 -0.9 hypothetical protein compare
ABID97_RS23230 -1.4 -6.5 transposase compare
ABID97_RS25625 -1.4 -2.1 tetratricopeptide repeat protein compare
ABID97_RS13865 -1.4 -3.4 hypothetical protein compare
ABID97_RS23325 -1.4 -4.8 cytochrome c biogenesis protein ResB compare
ABID97_RS08570 -1.4 -4.6 ferrous iron transporter B compare
ABID97_RS28990 -1.4 -5.0 aspartate 1-decarboxylase compare
ABID97_RS05765 -1.3 -2.0 UDP-glucose 4-epimerase GalE compare
ABID97_RS23380 -1.3 -7.7 lytic transglycosylase domain-containing protein compare
ABID97_RS02275 -1.3 -3.5 recombinase RecA compare
ABID97_RS23775 -1.3 -4.4 ABC transporter permease compare
ABID97_RS17665 -1.3 -1.5 DUF1993 domain-containing protein compare
ABID97_RS08445 -1.3 -4.6 FimV/HubP family polar landmark protein compare
ABID97_RS23275 -1.3 -5.3 type 4a pilus biogenesis protein PilO compare
ABID97_RS23285 -1.3 -9.3 pilus assembly protein PilM compare
ABID97_RS13500 -1.3 -1.5 tripartite tricarboxylate transporter substrate-binding protein compare
ABID97_RS06450 -1.3 -1.2 glucans biosynthesis glucosyltransferase MdoH compare
ABID97_RS20425 -1.3 -1.9 DUF2818 family protein compare
ABID97_RS00335 -1.3 -3.9 c-type cytochrome compare
ABID97_RS18205 -1.3 -2.6 XRE family transcriptional regulator compare
ABID97_RS27625 -1.3 -1.0 NAD(P)-binding domain-containing protein compare
ABID97_RS23265 -1.3 -5.2 type IV pilus secretin PilQ compare
ABID97_RS01590 -1.3 -3.4 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA compare
ABID97_RS27865 -1.2 -1.3 alpha/beta hydrolase family protein compare
ABID97_RS14090 -1.2 -1.1 response regulator transcription factor compare
ABID97_RS12140 -1.2 -5.7 alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase compare
ABID97_RS15465 -1.2 -6.8 sulfate ABC transporter substrate-binding protein compare
ABID97_RS13995 -1.2 -8.6 excinuclease ABC subunit UvrB compare
ABID97_RS16470 -1.2 -1.1 translational GTPase TypA compare
ABID97_RS02940 -1.2 -7.6 FAD-linked oxidase C-terminal domain-containing protein compare
ABID97_RS28495 -1.2 -1.2 FAD binding domain-containing protein compare
ABID97_RS02200 -1.2 -9.3 nucleoside-diphosphate sugar epimerase/dehydratase compare
ABID97_RS06460 -1.2 -1.1 sigma 54-interacting transcriptional regulator compare
ABID97_RS23280 -1.2 -4.7 PilN domain-containing protein compare
ABID97_RS22705 -1.2 -6.2 ATPase, T2SS/T4P/T4SS family compare
ABID97_RS24205 -1.2 -3.2 IclR family transcriptional regulator C-terminal domain-containing protein compare
ABID97_RS02210 -1.2 -6.0 pilin compare
ABID97_RS16175 -1.2 -1.1 response regulator transcription factor compare
ABID97_RS20980 -1.2 -1.0 transcriptional repressor compare
ABID97_RS05750 -1.1 -1.5 glycosyltransferase compare
ABID97_RS26680 -1.1 -1.5 AAA family ATPase compare
ABID97_RS23780 -1.1 -5.3 ABC transporter permease compare
ABID97_RS23970 -1.1 -7.1 DUF2244 domain-containing protein compare
ABID97_RS19660 -1.1 -2.1 hypothetical protein compare
ABID97_RS14850 -1.1 -2.6 P-II family nitrogen regulator compare
ABID97_RS25100 -1.1 -4.9 hydroxymethylglutaryl-CoA lyase compare
ABID97_RS24040 -1.1 -1.6 MarR family transcriptional regulator compare
ABID97_RS25125 -1.1 -3.3 enoyl-CoA hydratase/isomerase family protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source D-Arabinose in Variovorax sp. OAS795

For carbon source D-Arabinose across organisms