Experiment set1IT005 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2252 -7.4 -1.4 TolA protein compare
EX28DRAFT_2867 -6.6 -4.2 glycerate kinase compare
EX28DRAFT_0322 -6.3 -6.5 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_4452 -6.0 -1.9 thioredoxin compare
EX28DRAFT_2548 -5.9 -2.1 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_0328 -5.8 -1.1 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_0331 -5.7 -1.9 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0324 -5.7 -2.1 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0330 -5.7 -1.8 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_0334 -5.6 -1.8 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_0286 -5.3 -1.7 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_0523 -5.3 -1.0 Glycosyltransferase like family 2 compare
EX28DRAFT_0038 -5.3 -1.7 K+ transport systems, NAD-binding component compare
EX28DRAFT_0778 -5.2 -1.0 hypothetical protein compare
EX28DRAFT_2724 -5.2 -1.7 RNA compare
EX28DRAFT_0333 -5.0 -4.8 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0329 -4.9 -5.6 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0972 -4.8 -1.5 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_0332 -4.5 -7.6 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0321 -4.5 -0.8 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_4156 -4.4 -1.4 ribulose-phosphate 3-epimerase compare
EX28DRAFT_2774 -4.3 -6.2 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_0327 -4.3 -4.7 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_0111 -4.2 -1.1 FeS cluster assembly scaffold IscU compare
EX28DRAFT_1845 -4.2 -1.1 RNA compare
EX28DRAFT_2272 -4.1 -10.5 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_2974 -4.1 -7.0 transketolase, bacterial and yeast compare
EX28DRAFT_3710 -3.9 -6.0 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_2938 -3.9 -1.2 tRNA compare
EX28DRAFT_0325 -3.8 -3.3 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_2945 -3.7 -1.4 tyrosine recombinase XerD compare
EX28DRAFT_3401 -3.6 -1.0 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_0091 -3.6 -1.0 hypothetical protein compare
EX28DRAFT_0769 -3.6 -0.9 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_3073 -3.5 -4.8 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_4477 -3.5 -3.0 Predicted small periplasmic lipoprotein compare
EX28DRAFT_2298 -3.5 -7.9 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_0529 -3.4 -3.3 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_0693 -3.4 -0.9 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_2985 -3.3 -6.3 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_0076 -3.2 -2.6 elongation factor 4 compare
EX28DRAFT_2265 -3.2 -0.8 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_1474 -3.2 -0.8 AraC-type DNA-binding domain-containing proteins compare
EX28DRAFT_4271 -3.2 -0.6 glycerol-3-phosphate acyltransferase (EC 2.3.1.15) compare
EX28DRAFT_4341 -3.1 -2.8 Protein-disulfide isomerase compare
EX28DRAFT_0857 -3.1 -1.0 tRNA compare
EX28DRAFT_4386 -3.1 -2.8 Signal transduction histidine kinase compare
EX28DRAFT_3285 -3.0 -4.1 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_1719 -3.0 -0.7 integration host factor, alpha subunit compare
EX28DRAFT_1650 -2.9 -1.2 ribonuclease T compare
EX28DRAFT_0292 -2.9 -2.8 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_0323 -2.9 -4.2 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_3045 -2.9 -2.4 tonB-system energizer ExbB compare
EX28DRAFT_2540 -2.9 -3.7 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_3418 -2.8 -0.7 Bacterial regulatory helix-turn-helix protein, lysR family compare
EX28DRAFT_3647 -2.8 -3.7 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_0001 -2.8 -1.7 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_2240 -2.7 -1.6 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_3643 -2.7 -2.6 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_1596 -2.7 -0.7 Protein of unknown function (DUF1019) compare
EX28DRAFT_2531 -2.6 -2.3 endopeptidase La compare
EX28DRAFT_0125 -2.6 -0.7 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_3253 -2.5 -3.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4077 -2.5 -0.6 HAD-superfamily subfamily IB hydrolase, TIGR01490 compare
EX28DRAFT_0374 -2.5 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3851 -2.5 -9.2 Transcriptional regulator compare
EX28DRAFT_0526 -2.5 -2.0 hypothetical protein compare
EX28DRAFT_2045 -2.4 -0.6 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_2585 -2.4 -1.6 pyrroline-5-carboxylate reductase compare
EX28DRAFT_1986 -2.4 -1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_3711 -2.4 -0.6 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_2148 -2.4 -5.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2046 -2.3 -1.5 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_1307 -2.3 -1.3 hypothetical protein compare
EX28DRAFT_3675 -2.3 -5.7 transcriptional regulator, LacI family compare
EX28DRAFT_4155 -2.3 -2.5 DNA adenine methylase (dam) compare
EX28DRAFT_3185 -2.3 -2.2 transcriptional regulator, DeoR family compare
EX28DRAFT_3476 -2.2 -0.8 hypothetical protein compare
EX28DRAFT_2250 -2.2 -2.0 peptidoglycan-associated lipoprotein compare
EX28DRAFT_3315 -2.2 -0.6 Protein of unknown function (DUF2556) compare
EX28DRAFT_4478 -2.2 -3.4 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_1000 -2.1 -1.8 intracellular protease, PfpI family compare
EX28DRAFT_0804 -2.1 -0.8 type VI secretion system lysozyme-like protein compare
EX28DRAFT_3449 -2.1 -1.4 Predicted membrane protein compare
EX28DRAFT_2421 -2.1 -0.8 Protein of unknown function (DUF1158) compare
EX28DRAFT_0755 -2.1 -4.3 ribonuclease D compare
EX28DRAFT_2723 -2.1 -1.6 SsrA-binding protein compare
EX28DRAFT_4459 -2.1 -5.2 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_3883 -2.0 -2.5 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_0065 -2.0 -0.8 thioredoxin compare
EX28DRAFT_0132 -2.0 -3.0 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_4544 -2.0 -1.2 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_2288 -2.0 -1.1 negative regulator of replication initiation SeqA compare
EX28DRAFT_4515 -2.0 -1.1 hypothetical protein compare
EX28DRAFT_1497 -2.0 -0.8 hypothetical protein compare
EX28DRAFT_1626 -2.0 -1.2 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_0918 -2.0 -1.1 Ogr/Delta-like zinc finger compare
EX28DRAFT_2543 -2.0 -3.9 protoheme IX farnesyltransferase compare
EX28DRAFT_0291 -2.0 -2.8 Uncharacterized membrane protein, required for colicin V production compare
EX28DRAFT_4419 -1.9 -1.8 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_2846 -1.9 -3.3 adenylyl-sulfate kinase compare
EX28DRAFT_1941 -1.9 -1.0 Protein of unknown function (DUF4089) compare
EX28DRAFT_3309 -1.9 -2.8 Predicted membrane protein compare
EX28DRAFT_3616 -1.9 -2.0 threonine synthase compare
EX28DRAFT_2539 -1.9 -3.5 cytochrome o ubiquinol oxidase subunit II compare
EX28DRAFT_0521 -1.9 -2.7 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2237 -1.9 -3.3 galactose-1-phosphate uridylyltransferase, family 1 compare
EX28DRAFT_4461 -1.9 -3.2 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_0706 -1.9 -1.6 Entner-Doudoroff aldolase compare
EX28DRAFT_3079 -1.9 -0.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2695 -1.9 -2.3 pseudouridine synthase, RluA family compare
EX28DRAFT_2027 -1.9 -2.2 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_3252 -1.9 -1.6 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family compare
EX28DRAFT_0715 -1.9 -1.7 Protein of unknown function (DUF2511) compare
EX28DRAFT_4152 -1.8 -0.8 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_4158 -1.8 -1.8 tryptophanyl-tRNA synthetase (EC 6.1.1.2) compare
EX28DRAFT_2963 -1.8 -2.6 RNA compare
EX28DRAFT_1167 -1.8 -0.6 Uncharacterized conserved protein compare
EX28DRAFT_0730 -1.8 -1.0 YobH-like protein compare
EX28DRAFT_0228 -1.8 -0.9 tRNA compare
EX28DRAFT_1347 -1.8 -1.3 transcriptional regulator, DeoR family compare
EX28DRAFT_0394 -1.8 -3.2 Phosphotransferase System HPr (HPr) Family compare
EX28DRAFT_2299 -1.8 -5.1 Transcriptional regulator/sugar kinase compare
EX28DRAFT_1374 -1.8 -0.6 Short-chain dehydrogenases of various substrate specificities compare
EX28DRAFT_3879 -1.8 -2.9 Glycosyltransferase compare
EX28DRAFT_4180 -1.8 -2.4 conserved hypothetical metal-binding protein compare
EX28DRAFT_2331 -1.8 -7.7 D-alanyl-D-alanine carboxypeptidase compare
EX28DRAFT_4384 -1.8 -1.9 Superoxide dismutase compare
EX28DRAFT_4203 -1.8 -0.9 phosphonates metabolism transcriptional regulator PhnF compare
EX28DRAFT_0621 -1.8 -3.5 flagellar biosynthetic protein FliS compare
EX28DRAFT_2864 -1.8 -3.9 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_3849 -1.7 -1.6 PTS system, mannitol-specific IIC component compare
EX28DRAFT_4463 -1.7 -3.7 Teichoic acid biosynthesis proteins compare
EX28DRAFT_0250 -1.7 -1.9 PAAR motif compare
EX28DRAFT_2271 -1.7 -3.7 hypothetical protein compare
EX28DRAFT_1882 -1.7 -4.4 Periplasmic glucans biosynthesis protein compare
EX28DRAFT_3732 -1.7 -1.2 poly(A) polymerase compare
EX28DRAFT_2873 -1.7 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2287 -1.6 -4.4 phosphoglucomutase, alpha-D-glucose phosphate-specific compare
EX28DRAFT_4457 -1.6 -3.0 nucleotide sugar dehydrogenase compare
EX28DRAFT_0528 -1.6 -1.2 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase compare
EX28DRAFT_0434 -1.6 -0.6 hypothetical protein compare
EX28DRAFT_3172 -1.6 -4.9 Transcriptional regulator compare
EX28DRAFT_1620 -1.6 -0.7 hypothetical protein compare
EX28DRAFT_4123 -1.6 -1.8 transcriptional regulator, DeoR family compare
EX28DRAFT_0166 -1.6 -5.6 polyphosphate kinase 1 compare
EX28DRAFT_1586 -1.6 -3.4 hypothetical protein compare
EX28DRAFT_2535 -1.6 -5.6 trigger factor compare
EX28DRAFT_3313 -1.6 -3.3 putative TIM-barrel protein, nifR3 family compare
EX28DRAFT_0675 -1.6 -1.4 Chemotaxis protein compare
EX28DRAFT_2264 -1.6 -3.9 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_0922 -1.6 -1.1 TonB family C-terminal domain compare
EX28DRAFT_2160 -1.6 -1.6 P pilus assembly protein, pilin FimA compare
EX28DRAFT_1396 -1.5 -0.6 Amidases related to nicotinamidase compare
EX28DRAFT_3044 -1.5 -2.7 TonB system transport protein ExbD, group 1 compare
EX28DRAFT_2269 -1.5 -4.5 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_3297 -1.5 -2.9 ribonuclease, Rne/Rng family compare
EX28DRAFT_4191 -1.5 -1.5 small GTP-binding protein domain compare
EX28DRAFT_0073 -1.5 -0.9 Negative regulator of sigma E activity compare
EX28DRAFT_1530 -1.5 -0.7 hypothetical protein compare
EX28DRAFT_2916 -1.5 -4.9 diaminopimelate decarboxylase compare
EX28DRAFT_2948 -1.5 -3.7 Uncharacterized conserved protein compare
EX28DRAFT_1624 -1.5 -1.8 electron transport complex, RnfABCDGE type, B subunit compare
EX28DRAFT_1691 -1.5 -1.9 hypothetical protein compare
EX28DRAFT_3667 -1.5 -2.3 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_1250 -1.5 -0.8 Protein of unknown function (DUF421) compare
EX28DRAFT_1849 -1.5 -3.3 flagellar hook-associated protein 3 compare
EX28DRAFT_2677 -1.5 -0.8 hypothetical protein compare
EX28DRAFT_0395 -1.5 -3.0 1-phosphofructokinase compare
EX28DRAFT_2651 -1.5 -3.3 glutamate 5-kinase compare
EX28DRAFT_2650 -1.5 -5.0 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_4505 -1.5 -1.8 transcription elongation factor/antiterminator RfaH compare
EX28DRAFT_4120 -1.5 -3.6 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_3901 -1.5 -3.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_2541 -1.5 -0.6 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_4153 -1.5 -1.2 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_0096 -1.5 -2.7 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains compare
EX28DRAFT_0074 -1.5 -5.8 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_3778 -1.5 -1.5 Uncharacterised protein family (UPF0253) compare
EX28DRAFT_4482 -1.5 -1.9 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) compare
EX28DRAFT_2319 -1.4 -2.6 ABC-type polar amino acid transport system, ATPase component compare
EX28DRAFT_3046 -1.4 -3.2 cystathionine beta-lyase, bacterial compare
EX28DRAFT_3900 -1.4 -1.3 SpoU rRNA Methylase family/SpoU, rRNA methylase, C-terminal compare
EX28DRAFT_3134 -1.4 -1.9 hypothetical protein compare
EX28DRAFT_1679 -1.4 -2.6 pyruvate kinase compare
EX28DRAFT_0935 -1.4 -3.5 glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase compare
EX28DRAFT_2267 -1.4 -3.2 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_1129 -1.4 -1.7 hypothetical protein compare
EX28DRAFT_4061 -1.4 -2.5 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_3669 -1.4 -4.6 3-isopropylmalate dehydrogenase compare
EX28DRAFT_4331 -1.4 -4.6 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_3311 -1.4 -0.5 ribosomal protein L11 methyltransferase compare
EX28DRAFT_0602 -1.4 -0.6 Dextransucrase DSRB compare
EX28DRAFT_2796 -1.4 -2.6 transcriptional regulator, DeoR family compare
EX28DRAFT_0934 -1.4 -4.4 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_4318 -1.4 -2.2 Glucose-6-phosphate isomerase compare
EX28DRAFT_4456 -1.4 -4.4 UDP-N-acetylglucosamine 2-epimerase compare
EX28DRAFT_3058 -1.3 -0.8 Signal transduction histidine kinase compare
EX28DRAFT_0988 -1.3 -2.6 beta-phosphoglucomutase compare
EX28DRAFT_2263 -1.3 -1.7 succinyl-CoA synthetase, alpha subunit compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days in Enterobacter asburiae PDN3

For in planta Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days across organisms