Experiment set1IT004 for Pseudomonas simiae WCS417

Compare to:

LB with Thallium(I) acetate 0.0625 mg/ml

200 most important genes:

  gene name fitness t score description  
PS417_01520 -3.8 -13.0 arsenic resistance protein conserved
PS417_24155 -3.8 -4.5 ATP-binding protein compare
PS417_26335 -3.5 -3.9 BetI family transcriptional regulator compare
PS417_26345 -3.5 -7.3 choline dehydrogenase conserved
PS417_26340 -3.0 -7.9 betaine-aldehyde dehydrogenase compare
PS417_02555 -2.6 -17.3 exoribonuclease R compare
PS417_24835 -2.5 -6.3 hypothetical protein compare
PS417_28070 -2.2 -6.8 phosphate ABC transporter ATP-binding protein compare
PS417_00075 -2.0 -4.8 hypothetical protein compare
PS417_20635 -1.9 -1.5 ABC transporter ATP-binding protein compare
PS417_08220 -1.8 -1.4 epimerase compare
PS417_27800 -1.8 -6.4 exodeoxyribonuclease III compare
PS417_00180 -1.7 -3.0 tryptophan synthase subunit alpha compare
PS417_28080 -1.7 -9.4 phosphate ABC transporter permease compare
PS417_07470 -1.4 -1.5 hypothetical protein compare
PS417_11930 -1.4 -6.6 hypothetical protein compare
PS417_27360 -1.3 -3.7 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
PS417_20080 -1.3 -2.5 peptidase P60 compare
PS417_23775 -1.3 -1.4 exodeoxyribonuclease V subunit beta compare
PS417_27870 -1.3 -2.5 ATP-dependent DNA helicase RecG compare
PS417_06075 -1.2 -2.0 hypothetical protein compare
PS417_28085 -1.2 -6.9 phosphate-binding protein compare
PS417_01715 -1.2 -1.1 hypothetical protein compare
PS417_19415 -1.1 -3.0 allantoinase compare
PS417_07615 -1.1 -3.8 TetR family transcriptional regulator compare
PS417_01915 -1.1 -1.0 ATP-dependent protease ATP-binding subunit HslU compare
PS417_06680 -1.1 -6.6 nuclease PIN compare
PS417_22450 -1.1 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_20650 -1.1 -5.6 hypothetical protein compare
PS417_22445 -1.1 -2.8 ATP-dependent DNA helicase RuvB compare
PS417_18310 -1.0 -1.8 hypothetical protein compare
PS417_09235 -1.0 -1.0 molecular chaperone compare
PS417_01110 -1.0 -4.1 cysteine desulfhydrase compare
PS417_08410 -1.0 -2.1 hypothetical protein compare
PS417_23205 -1.0 -3.6 transcriptional regulator compare
PS417_23770 -1.0 -1.6 exodeoxyribonuclease V subunit alpha compare
PS417_02495 -1.0 -4.3 GTPase HflX compare
PS417_28075 -1.0 -3.5 phosphate ABC transporter permease compare
PS417_04595 -1.0 -2.5 cell division protein MraZ compare
PS417_24560 -1.0 -3.2 ferrous iron transporter compare
PS417_07770 -1.0 -1.8 hypothetical protein compare
PS417_00080 -0.9 -4.5 potassium transporter peripheral membrane component compare
PS417_12355 -0.9 -1.8 magnesium chelatase compare
PS417_06835 -0.9 -2.1 phospholipase compare
PS417_01855 -0.9 -1.8 phosphoribosyl-AMP cyclohydrolase compare
PS417_20645 -0.9 -4.6 membrane protein compare
PS417_10095 -0.9 -1.4 hypothetical protein compare
PS417_27795 -0.9 -0.9 orotate phosphoribosyltransferase compare
PS417_02225 -0.9 -1.9 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_16510 -0.9 -1.8 Clp protease ClpX compare
PS417_20520 -0.9 -1.9 3-phosphoglycerate kinase compare
PS417_12090 -0.9 -2.2 hypothetical protein compare
PS417_16715 -0.9 -1.4 DoxX family protein compare
PS417_28515 -0.9 -2.3 16S rRNA methyltransferase compare
PS417_12670 -0.9 -2.1 hypothetical protein compare
PS417_04500 -0.9 -1.3 hypothetical protein compare
PS417_28145 -0.8 -1.9 AraC family transcriptional regulator compare
PS417_26240 -0.8 -1.8 N-methylproline demethylase compare
PS417_20610 -0.8 -1.1 hypothetical protein compare
PS417_02475 -0.8 -2.8 N-acetylmuramoyl-L-alanine amidase compare
PS417_17675 -0.8 -1.4 ABC transporter compare
PS417_23210 -0.8 -1.6 serine acetyltransferase compare
PS417_09705 -0.8 -2.6 hypothetical protein compare
PS417_06780 -0.8 -1.8 TetR family transcriptional regulator compare
PS417_26370 -0.8 -2.9 RNA helicase compare
PS417_27425 -0.8 -4.2 exopolyphosphatase compare
PS417_16055 -0.8 -1.6 biopolymer transporter TolR compare
PS417_05500 -0.8 -1.4 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_21065 -0.8 -1.7 3-methylitaconate isomerase compare
PS417_25645 -0.8 -3.1 peptidase M23 compare
PS417_23825 -0.8 -4.5 penicillin-binding protein compare
PS417_15780 -0.8 -2.1 membrane protein compare
PS417_15745 -0.8 -1.8 lipid carrier protein compare
PS417_21745 -0.7 -4.7 ABC transporter for L-Arginine, substrate-binding component (from data) compare
PS417_14950 -0.7 -2.1 structural protein MipA compare
PS417_14825 -0.7 -3.0 hypothetical protein compare
PS417_10320 -0.7 -2.2 hypothetical protein compare
PS417_14305 -0.7 -2.0 hydroxyproline-2-epimerase compare
PS417_14980 -0.7 -0.9 universal stress protein UspA compare
PS417_05475 -0.7 -2.7 arginase compare
PS417_01965 -0.7 -1.4 fimbriae biosynthesis protein compare
PS417_12820 -0.7 -1.9 hypothetical protein compare
PS417_27155 -0.7 -1.1 aliphatic sulfonates transport ATP-binding subunit compare
PS417_02975 -0.7 -3.0 3-dehydroquinate dehydratase compare
PS417_01500 -0.7 -2.7 amino acid transporter compare
PS417_01490 -0.7 -2.7 ABC transporter permease compare
PS417_06245 -0.7 -1.7 zinc metallopeptidase RseP compare
PS417_24705 -0.7 -1.6 D-alanyl-D-alanine carboxypeptidase compare
PS417_03100 -0.7 -0.5 pilus assembly protein compare
PS417_00375 -0.7 -1.8 membrane protein compare
PS417_22640 -0.7 -1.7 cytochrome C biogenesis protein CcmE compare
PS417_01005 -0.7 -1.7 methionine ABC transporter substrate-binding protein compare
PS417_10105 -0.7 -2.7 hypothetical protein compare
PS417_00155 -0.7 -1.2 2-dehydro-3-deoxygalactonokinase compare
PS417_02175 -0.7 -1.9 transcriptional regulator compare
PS417_09830 -0.7 -2.8 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PS417_23215 -0.7 -1.9 RNA methyltransferase compare
PS417_08320 -0.6 -1.8 metal-chelation protein CHAD compare
PS417_15100 -0.6 -1.7 BatB protein compare
PS417_16400 -0.6 -1.4 NAD(P)H-quinone oxidoreductase compare
PS417_19720 -0.6 -1.0 DNA-binding protein compare
PS417_20185 -0.6 -2.3 ketosteroid isomerase compare
PS417_26365 -0.6 -2.1 EmrB/QacA subfamily drug resistance transporter compare
PS417_12730 -0.6 -1.4 glycosyltransferase compare
PS417_06100 -0.6 -1.2 SAM-dependent methyltransferase compare
PS417_23360 -0.6 -0.8 hypothetical protein compare
PS417_03705 -0.6 -1.9 2-alkenal reductase compare
PS417_21850 -0.6 -0.8 LysR family transcriptional regulator compare
PS417_10305 -0.6 -1.5 hypothetical protein compare
PS417_02040 -0.6 -2.4 3-hydroxylacyl-ACP dehydratase compare
PS417_07875 -0.6 -0.7 hypothetical protein compare
PS417_06895 -0.6 -2.1 DNA-binding protein compare
PS417_09210 -0.6 -1.0 TetR family transcriptional regulator compare
PS417_01285 -0.6 -1.6 haloacid dehalogenase compare
PS417_08620 -0.6 -0.8 hypothetical protein compare
PS417_10985 -0.6 -0.6 NADH:flavin oxidoreductase compare
PS417_18605 -0.6 -3.3 LysR family transcriptional regulator compare
PS417_27515 -0.6 -2.6 heme biosynthesis protein HemY compare
PS417_27595 -0.6 -1.3 recombinase XerC compare
PS417_18355 -0.6 -3.0 DNA-binding protein compare
PS417_20825 -0.6 -1.4 drug:proton antiporter compare
PS417_05040 -0.6 -2.4 amino acid dehydrogenase compare
PS417_00405 -0.6 -3.1 DNA polymerase I compare
PS417_23545 -0.6 -1.2 gamma-glutamyl kinase compare
PS417_05165 -0.6 -1.5 cytosol aminopeptidase compare
PS417_25695 -0.6 -2.1 peroxiredoxin compare
PS417_08125 -0.6 -0.7 prephenate dehydratase compare
PS417_16490 -0.6 -0.8 cell division protein FtsK compare
PS417_00185 -0.6 -1.5 tryptophan synthase subunit beta compare
PS417_27215 -0.6 -1.5 hypothetical protein compare
PS417_04825 -0.6 -2.8 alginate regulatory protein compare
PS417_23155 -0.6 -2.8 pilus assembly protein PilW compare
PS417_26535 -0.6 -1.7 cytochrome B561 compare
PS417_01495 -0.6 -2.9 amino acid ABC transporter compare
PS417_23615 -0.6 -1.4 sulfate transporter compare
PS417_01875 -0.6 -1.5 polyhydroxyalkanoic acid system protein compare
PS417_04800 -0.6 -1.5 alginate O-acetyltransferase compare
PS417_21360 -0.6 -0.7 termination factor Rho compare
PS417_21275 -0.6 -4.0 GntR family transcriptional regulator compare
PS417_13730 -0.6 -1.4 hypothetical protein compare
PS417_09915 -0.6 -0.5 hypothetical protein compare
PS417_07950 -0.6 -1.9 MFS transporter compare
PS417_12215 -0.6 -3.1 lytic transglycosylase compare
PS417_25780 -0.6 -1.8 molecular chaperone DnaJ compare
PS417_11400 -0.5 -1.0 phosphoglycerate mutase compare
PS417_00915 -0.5 -1.9 aminotransferase compare
PS417_00590 -0.5 -1.4 5S ribosomal RNA compare
PS417_14855 -0.5 -1.3 gluconolactonase compare
PS417_24070 -0.5 -2.9 recombination and repair protein compare
PS417_27605 -0.5 -2.7 hypothetical protein compare
PS417_23760 -0.5 -2.5 DeoR faimly transcriptional regulator compare
PS417_12690 -0.5 -2.4 xylulose kinase compare
PS417_06175 -0.5 -2.4 cysteine sulfinate desulfinase compare
PS417_12290 -0.5 -2.9 sulfite reductase compare
PS417_16465 -0.5 -3.0 sirohydrochlorin ferrochelatase compare
PS417_11925 -0.5 -1.1 hypothetical protein compare
PS417_09220 -0.5 -1.6 cupin compare
PS417_04475 -0.5 -2.0 hypothetical protein compare
PS417_10910 -0.5 -1.8 FAD-dependent oxidoreductase compare
PS417_08920 -0.5 -3.5 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_08200 -0.5 -1.7 hypothetical protein compare
PS417_22570 -0.5 -0.5 H-NS histone compare
PS417_01590 -0.5 -0.9 polysaccharide deacetylase compare
PS417_18140 -0.5 -1.2 hypothetical protein compare
PS417_08790 -0.5 -1.9 pyruvate kinase compare
PS417_04305 -0.5 -0.8 aspartate ammonia-lyase compare
PS417_09615 -0.5 -2.0 glycosyl transferase family 1 compare
PS417_04920 -0.5 -2.1 GntR family transcriptional regulator compare
PS417_21135 -0.5 -2.4 Asp/Glu/hydantoin racemase compare
PS417_06205 -0.5 -2.7 methionine aminopeptidase compare
PS417_18260 -0.5 -1.8 TetR family transcriptional regulator compare
PS417_05535 -0.5 -0.9 Fis family transcriptional regulator compare
PS417_22205 -0.5 -3.2 potassium transporter TrkH compare
PS417_15435 -0.5 -1.5 metallophosphatase compare
PS417_05225 -0.5 -3.4 tRNA methyltransferase compare
PS417_14940 -0.5 -1.1 LysR family transcriptional regulator compare
PS417_02510 -0.5 -1.3 ATP phosphoribosyltransferase regulatory subunit compare
PS417_20855 -0.5 -0.9 hypothetical protein compare
PS417_08510 -0.5 -0.7 LysR family transcriptional regulator compare
PS417_22575 -0.5 -2.5 exonuclease I compare
PS417_01600 -0.5 -1.4 peptidase M23 compare
PS417_10480 -0.5 -1.1 glutathione S-transferase compare
PS417_08540 -0.5 -1.5 RNA helicase compare
PS417_08665 -0.5 -2.5 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_07885 -0.5 -1.5 hypothetical protein compare
PS417_07540 -0.5 -1.2 multifunctional fatty acid oxidation complex subunit alpha compare
PS417_09570 -0.5 -2.3 GCN5 family acetyltransferase compare
PS417_26685 -0.5 -1.1 hypothetical protein compare
PS417_26260 -0.5 -0.9 hypothetical protein compare
PS417_13325 -0.5 -1.7 hypothetical protein compare
PS417_07695 -0.5 -2.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_19200 -0.5 -1.5 fumarate hydratase compare
PS417_23015 -0.5 -1.6 NGG1p interacting factor 3 protein, NIF3 compare
PS417_21760 -0.5 -0.9 hypothetical protein compare
PS417_03285 -0.5 -1.9 chromosome partitioning protein compare
PS417_01920 -0.5 -0.9 ATP-dependent protease subunit HslV compare
PS417_17100 -0.5 -2.2 spore coat protein compare
PS417_13650 -0.5 -1.4 LacI family transcriptional regulator compare
PS417_14840 -0.5 -1.8 abortive phage infection protein compare
PS417_05105 -0.5 -1.5 membrane protein compare


Specific Phenotypes

For 11 genes in this experiment

For stress Thallium(I) acetate in Pseudomonas simiae WCS417

For stress Thallium(I) acetate across organisms