Experiment set1IT004 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_3643 -6.7 -2.0 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_3073 -6.1 -3.5 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_0697 -6.0 -1.8 ABC-type Mn2+/Zn2+ transport systems, permease components compare
EX28DRAFT_2867 -6.0 -4.8 glycerate kinase compare
EX28DRAFT_0312 -6.0 -2.0 phosphate acetyltransferase compare
EX28DRAFT_0328 -5.7 -1.0 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_0331 -5.6 -1.7 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0324 -5.6 -1.9 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0330 -5.6 -1.6 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_2272 -5.5 -13.2 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0322 -5.5 -6.0 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_0334 -5.4 -1.6 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_2774 -5.1 -3.5 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_3694 -5.0 -0.9 mutator mutT protein compare
EX28DRAFT_1620 -4.9 -0.8 hypothetical protein compare
EX28DRAFT_0921 -4.8 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0333 -4.7 -5.4 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_0726 -4.6 -2.5 C-terminal peptidase (prc) compare
EX28DRAFT_0972 -4.6 -1.4 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_0323 -4.5 -3.5 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_0327 -4.5 -5.2 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_0321 -4.4 -0.8 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_1825 -4.4 -1.5 uncharacterized proteobacterial lipoprotein compare
EX28DRAFT_2548 -4.4 -3.1 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_4156 -4.4 -1.3 ribulose-phosphate 3-epimerase compare
EX28DRAFT_3710 -4.3 -3.0 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_2985 -4.3 -6.6 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_1941 -4.2 -1.0 Protein of unknown function (DUF4089) compare
EX28DRAFT_0922 -4.2 -1.4 TonB family C-terminal domain compare
EX28DRAFT_1596 -4.1 -0.7 Protein of unknown function (DUF1019) compare
EX28DRAFT_2258 -4.1 -1.2 cytochrome d oxidase, subunit II (cydB) compare
EX28DRAFT_4348 -4.1 -1.8 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_0529 -4.1 -2.9 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_4461 -4.1 -4.7 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_1374 -3.9 -0.7 Short-chain dehydrogenases of various substrate specificities compare
EX28DRAFT_2298 -3.9 -8.7 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_3675 -3.8 -6.5 transcriptional regulator, LacI family compare
EX28DRAFT_0329 -3.7 -3.7 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0076 -3.7 -1.4 elongation factor 4 compare
EX28DRAFT_3253 -3.7 -2.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3320 -3.7 -0.6 hypothetical protein compare
EX28DRAFT_1841 -3.6 -0.6 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_2240 -3.5 -1.7 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_0065 -3.5 -0.9 thioredoxin compare
EX28DRAFT_0769 -3.5 -0.8 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_4386 -3.4 -2.6 Signal transduction histidine kinase compare
EX28DRAFT_2252 -3.4 -1.8 TolA protein compare
EX28DRAFT_2531 -3.3 -2.7 endopeptidase La compare
EX28DRAFT_3616 -3.3 -3.3 threonine synthase compare
EX28DRAFT_4212 -3.3 -0.6 Acetyltransferase (GNAT) family compare
EX28DRAFT_0693 -3.3 -0.8 DNA-binding regulatory protein, YebC/PmpR family compare
EX28DRAFT_0214 -3.3 -2.8 cysteine synthase A compare
EX28DRAFT_0325 -3.2 -3.4 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_0073 -3.2 -0.8 Negative regulator of sigma E activity compare
EX28DRAFT_4173 -3.2 -1.5 Predicted redox protein, regulator of disulfide bond formation compare
EX28DRAFT_1283 -3.1 -0.8 hypothetical protein compare
EX28DRAFT_2265 -3.1 -0.7 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0523 -3.0 -0.9 Glycosyltransferase like family 2 compare
EX28DRAFT_1342 -3.0 -1.0 hypothetical protein compare
EX28DRAFT_1986 -2.9 -0.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_2845 -2.8 -1.2 Protein of unknown function (DUF3561) compare
EX28DRAFT_1719 -2.8 -0.6 integration host factor, alpha subunit compare
EX28DRAFT_3368 -2.8 -0.7 tRNA dimethylallyltransferase compare
EX28DRAFT_3172 -2.8 -4.2 Transcriptional regulator compare
EX28DRAFT_3883 -2.8 -2.2 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2958 -2.6 -0.6 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_2677 -2.6 -0.9 hypothetical protein compare
EX28DRAFT_0286 -2.6 -1.3 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_0332 -2.5 -4.0 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0725 -2.5 -1.3 Activator of osmoprotectant transporter ProP compare
EX28DRAFT_4184 -2.5 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_4341 -2.5 -2.3 Protein-disulfide isomerase compare
EX28DRAFT_0199 -2.5 -1.4 coproporphyrinogen oxidase (EC 1.3.3.3) compare
EX28DRAFT_4459 -2.5 -5.1 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_0081 -2.4 -2.8 DNA replication and repair protein RecO compare
EX28DRAFT_0545 -2.4 -2.5 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_1328 -2.4 -0.6 Putative excisionase (DUF1233) compare
EX28DRAFT_2299 -2.4 -5.4 Transcriptional regulator/sugar kinase compare
EX28DRAFT_2225 -2.4 -5.2 3-carboxymuconate cyclase compare
EX28DRAFT_3711 -2.4 -0.6 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_3058 -2.3 -2.2 Signal transduction histidine kinase compare
EX28DRAFT_3519 -2.3 -0.7 Predicted transcriptional regulators compare
EX28DRAFT_4155 -2.3 -2.5 DNA adenine methylase (dam) compare
EX28DRAFT_2547 -2.3 -0.9 DJ-1 family protein compare
EX28DRAFT_4384 -2.3 -2.6 Superoxide dismutase compare
EX28DRAFT_0521 -2.3 -2.7 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_2205 -2.3 -1.2 Molybdopterin converting factor, large subunit compare
EX28DRAFT_0897 -2.3 -0.7 P2-like prophage tail protein X compare
EX28DRAFT_1417 -2.3 -2.6 phenylacetate-CoA oxygenase, PaaJ subunit compare
EX28DRAFT_2974 -2.2 -3.3 transketolase, bacterial and yeast compare
EX28DRAFT_2864 -2.2 -3.8 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_3285 -2.2 -2.9 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_1382 -2.2 -1.2 transcriptional regulator, TetR family compare
EX28DRAFT_3851 -2.2 -7.0 Transcriptional regulator compare
EX28DRAFT_0857 -2.2 -0.8 tRNA compare
EX28DRAFT_0494 -2.2 -1.7 Protein-tyrosine-phosphatase compare
EX28DRAFT_1834 -2.2 -2.6 beta-ketoacyl-acyl-carrier-protein synthase II compare
EX28DRAFT_1260 -2.2 -1.7 hypothetical protein compare
EX28DRAFT_4515 -2.2 -1.1 hypothetical protein compare
EX28DRAFT_3044 -2.1 -2.8 TonB system transport protein ExbD, group 1 compare
EX28DRAFT_0313 -2.1 -4.5 acetate kinase compare
EX28DRAFT_1626 -2.1 -1.0 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_3314 -2.1 -0.4 Factor for inversion stimulation Fis, transcriptional activator compare
EX28DRAFT_1360 -2.1 -1.5 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0069 -2.1 -1.0 Superfamily II DNA and RNA helicases compare
EX28DRAFT_0118 -2.1 -2.4 SseB protein C-terminal domain/SseB protein N-terminal domain compare
EX28DRAFT_4061 -2.0 -4.5 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_3645 -2.0 -2.0 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_4478 -2.0 -3.8 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_0621 -1.9 -4.0 flagellar biosynthetic protein FliS compare
EX28DRAFT_1508 -1.9 -1.5 Membrane transporters of cations and cationic drugs compare
EX28DRAFT_1573 -1.9 -0.7 hypothetical protein compare
EX28DRAFT_1838 -1.9 -1.9 3-oxoacyl-(acyl-carrier-protein) synthase III compare
EX28DRAFT_2540 -1.9 -1.5 cytochrome o ubiquinol oxidase, subunit I compare
EX28DRAFT_2945 -1.9 -1.4 tyrosine recombinase XerD compare
EX28DRAFT_0142 -1.9 -3.2 hypothetical protein compare
EX28DRAFT_0125 -1.9 -0.5 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_2890 -1.8 -0.8 tRNA compare
EX28DRAFT_0374 -1.8 -0.6 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0755 -1.8 -3.9 ribonuclease D compare
EX28DRAFT_4421 -1.8 -0.8 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_4362 -1.8 -2.8 transcriptional regulator, DeoR family compare
EX28DRAFT_2695 -1.8 -2.2 pseudouridine synthase, RluA family compare
EX28DRAFT_2938 -1.8 -1.0 tRNA compare
EX28DRAFT_1784 -1.8 -2.3 hypothetical protein compare
EX28DRAFT_3861 -1.8 -1.6 Glutaredoxin, GrxC family compare
EX28DRAFT_4191 -1.8 -1.6 small GTP-binding protein domain compare
EX28DRAFT_0926 -1.8 -0.7 Predicted Fe-S-cluster oxidoreductase compare
EX28DRAFT_2250 -1.7 -1.7 peptidoglycan-associated lipoprotein compare
EX28DRAFT_3644 -1.7 -2.5 Uncharacterized protein affecting Mg2+/Co2+ transport compare
EX28DRAFT_4299 -1.7 -0.8 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
EX28DRAFT_1548 -1.7 -3.9 Uncharacterized membrane protein required for alginate biosynthesis compare
EX28DRAFT_2264 -1.7 -2.8 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_3129 -1.7 -1.8 transcriptional regulator, TraR/DksA family compare
EX28DRAFT_0526 -1.7 -1.6 hypothetical protein compare
EX28DRAFT_1497 -1.7 -0.7 hypothetical protein compare
EX28DRAFT_3173 -1.7 -5.0 Pirin-related protein compare
EX28DRAFT_3434 -1.7 -1.5 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_0038 -1.7 -1.0 K+ transport systems, NAD-binding component compare
EX28DRAFT_2148 -1.6 -4.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1700 -1.6 -0.8 hypothetical protein compare
EX28DRAFT_0908 -1.6 -1.0 phage tail protein, P2 protein I family compare
EX28DRAFT_0074 -1.6 -5.4 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_2963 -1.6 -2.6 RNA compare
EX28DRAFT_4318 -1.6 -2.2 Glucose-6-phosphate isomerase compare
EX28DRAFT_1565 -1.6 -0.6 Domain of unknown function (DUF1789) compare
EX28DRAFT_3901 -1.6 -4.9 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_1402 -1.6 -1.3 Glyoxalase-like domain compare
EX28DRAFT_3212 -1.6 -3.0 Lipoprotein NlpI, contains TPR repeats compare
EX28DRAFT_3849 -1.6 -1.6 PTS system, mannitol-specific IIC component compare
EX28DRAFT_3372 -1.6 -2.6 HflC protein compare
EX28DRAFT_1500 -1.6 -1.2 Predicted transcriptional regulators compare
EX28DRAFT_0166 -1.5 -4.6 polyphosphate kinase 1 compare
EX28DRAFT_4120 -1.5 -3.9 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_2893 -1.5 -4.0 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_2269 -1.5 -4.8 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_1305 -1.5 -2.5 hypothetical protein compare
EX28DRAFT_2651 -1.5 -5.6 glutamate 5-kinase compare
EX28DRAFT_2773 -1.5 -1.2 RNA compare
EX28DRAFT_3375 -1.5 -0.7 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_4153 -1.5 -1.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_0132 -1.5 -1.7 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_2840 -1.5 -2.5 3'-nucleotidase (EC 3.1.3.6)/5'-nucleotidase (EC 3.1.3.5)/exopolyphosphatase (EC 3.6.1.11) compare
EX28DRAFT_3708 -1.4 -0.6 Transcriptional regulators compare
EX28DRAFT_3259 -1.4 -3.2 Predicted P-loop-containing kinase compare
EX28DRAFT_2434 -1.4 -2.0 Protein of unknown function (DUF1471) compare
EX28DRAFT_0876 -1.4 -0.5 hypothetical protein compare
EX28DRAFT_1839 -1.4 -3.8 phosphate:acyl-[acyl carrier protein] acyltransferase compare
EX28DRAFT_2067 -1.4 -0.8 Transglycosylase SLT domain compare
EX28DRAFT_3410 -1.4 -1.3 hypothetical protein compare
EX28DRAFT_4457 -1.4 -3.3 nucleotide sugar dehydrogenase compare
EX28DRAFT_3667 -1.4 -2.9 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_3574 -1.4 -0.5 Protein of unknown function (DUF1435) compare
EX28DRAFT_4544 -1.4 -1.0 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_0717 -1.4 -2.9 Glycosyltransferase family 17 compare
EX28DRAFT_2471 -1.4 -4.3 Membrane protease subunits, stomatin/prohibitin homologs compare
EX28DRAFT_1510 -1.4 -1.2 hypothetical protein compare
EX28DRAFT_4505 -1.4 -1.7 transcription elongation factor/antiterminator RfaH compare
EX28DRAFT_3185 -1.4 -1.3 transcriptional regulator, DeoR family compare
EX28DRAFT_2268 -1.4 -4.1 succinate dehydrogenase subunit A (EC 1.3.5.1) compare
EX28DRAFT_2287 -1.4 -4.7 phosphoglucomutase, alpha-D-glucose phosphate-specific compare
EX28DRAFT_0918 -1.3 -0.8 Ogr/Delta-like zinc finger compare
EX28DRAFT_3217 -1.3 -4.5 tRNA pseudouridine(55) synthase compare
EX28DRAFT_1650 -1.3 -1.0 ribonuclease T compare
EX28DRAFT_1464 -1.3 -2.1 Uncharacterized component of anaerobic dehydrogenases compare
EX28DRAFT_1643 -1.3 -1.2 Cu/Zn superoxide dismutase compare
EX28DRAFT_3474 -1.3 -2.1 hypothetical protein compare
EX28DRAFT_4456 -1.3 -3.4 UDP-N-acetylglucosamine 2-epimerase compare
EX28DRAFT_2331 -1.3 -5.2 D-alanyl-D-alanine carboxypeptidase compare
EX28DRAFT_3701 -1.3 -1.6 prepilin-type N-terminal cleavage/methylation domain compare
EX28DRAFT_2213 -1.3 -1.6 dethiobiotin synthase compare
EX28DRAFT_2543 -1.3 -3.1 protoheme IX farnesyltransferase compare
EX28DRAFT_1250 -1.3 -0.6 Protein of unknown function (DUF421) compare
EX28DRAFT_4244 -1.3 -1.4 hypothetical protein compare
EX28DRAFT_3654 -1.3 -3.5 L-arabinose isomerase compare
EX28DRAFT_2046 -1.3 -1.2 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_3566 -1.3 -0.7 Uncharacterized conserved protein compare
EX28DRAFT_2541 -1.2 -0.5 cytochrome o ubiquinol oxidase, subunit III compare
EX28DRAFT_2043 -1.2 -3.9 transcriptional regulator, AsnC family compare
EX28DRAFT_0818 -1.2 -1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Enterobacter asburiae PDN3 in in planta experiments

For in planta Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days across organisms