Experiment set1IT003 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2867 -5.5 -4.5 glycerate kinase compare
EX28DRAFT_2252 -5.5 -1.4 TolA protein compare
EX28DRAFT_0328 -5.4 -0.9 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_3643 -5.3 -2.3 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_3073 -5.2 -4.1 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_0334 -4.9 -1.5 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_0523 -4.9 -0.8 Glycosyltransferase like family 2 compare
EX28DRAFT_2548 -4.8 -2.3 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_0286 -4.6 -1.4 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_0038 -4.5 -1.3 K+ transport systems, NAD-binding component compare
EX28DRAFT_2724 -4.4 -1.3 RNA compare
EX28DRAFT_3172 -4.3 -6.8 Transcriptional regulator compare
EX28DRAFT_1771 -4.3 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0330 -4.2 -1.8 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_0325 -4.2 -2.5 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_0321 -4.1 -0.7 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_0329 -4.1 -5.2 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0327 -4.0 -4.1 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_2774 -4.0 -4.7 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_0333 -3.9 -5.0 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_3045 -3.9 -2.8 tonB-system energizer ExbB compare
EX28DRAFT_0331 -3.9 -1.6 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_2270 -3.8 -0.7 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_1596 -3.8 -0.7 Protein of unknown function (DUF1019) compare
EX28DRAFT_1986 -3.8 -0.9 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_0324 -3.7 -1.8 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_2298 -3.7 -8.4 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_2240 -3.7 -1.5 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_0125 -3.7 -0.6 nucleoside diphosphate kinase (EC 2.7.4.6) compare
EX28DRAFT_4156 -3.7 -1.1 ribulose-phosphate 3-epimerase compare
EX28DRAFT_3675 -3.7 -5.5 transcriptional regulator, LacI family compare
EX28DRAFT_2272 -3.6 -9.0 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0922 -3.6 -1.2 TonB family C-terminal domain compare
EX28DRAFT_0726 -3.6 -2.4 C-terminal peptidase (prc) compare
EX28DRAFT_0322 -3.6 -4.1 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_2589 -3.6 -0.6 Sigma-S stabilisation anti-adaptor protein compare
EX28DRAFT_0332 -3.5 -5.8 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_2585 -3.5 -1.4 pyrroline-5-carboxylate reductase compare
EX28DRAFT_2985 -3.5 -6.4 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_3883 -3.4 -2.7 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_2851 -3.4 -1.3 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_2263 -3.4 -3.2 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_2938 -3.4 -1.0 tRNA compare
EX28DRAFT_0778 -3.3 -0.8 hypothetical protein compare
EX28DRAFT_3089 -3.3 -0.6 Transcriptional regulators compare
EX28DRAFT_4478 -3.3 -4.0 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_0046 -3.3 -2.0 shikimate dehydrogenase compare
EX28DRAFT_1841 -3.3 -0.6 Predicted metal-binding, possibly nucleic acid-binding protein compare
EX28DRAFT_3285 -3.2 -3.7 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_1692 -3.2 -0.8 Biofilm development protein YmgB/AriR compare
EX28DRAFT_2027 -3.2 -3.1 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_3710 -3.2 -4.0 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_0769 -3.2 -0.8 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_0323 -3.1 -2.9 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_0111 -3.1 -0.9 FeS cluster assembly scaffold IscU compare
EX28DRAFT_0001 -3.0 -1.5 Elongation factor Tu domain 2/Elongation factor Tu C-terminal domain compare
EX28DRAFT_2267 -3.0 -4.9 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_4461 -2.9 -3.6 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_2945 -2.9 -1.0 tyrosine recombinase XerD compare
EX28DRAFT_3851 -2.8 -7.6 Transcriptional regulator compare
EX28DRAFT_4153 -2.8 -1.4 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_0108 -2.8 -0.7 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_4386 -2.7 -1.7 Signal transduction histidine kinase compare
EX28DRAFT_0857 -2.7 -0.8 tRNA compare
EX28DRAFT_2299 -2.7 -7.6 Transcriptional regulator/sugar kinase compare
EX28DRAFT_2864 -2.7 -6.1 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_4155 -2.6 -2.3 DNA adenine methylase (dam) compare
EX28DRAFT_4362 -2.6 -3.8 transcriptional regulator, DeoR family compare
EX28DRAFT_4297 -2.6 -0.6 cell division ATP-binding protein FtsE compare
EX28DRAFT_1626 -2.6 -1.1 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_2650 -2.6 -7.3 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_3449 -2.6 -1.3 Predicted membrane protein compare
EX28DRAFT_2138 -2.6 -2.2 molybdopterin synthase sulfurylase MoeB compare
EX28DRAFT_0712 -2.6 -0.6 DNA polymerase III, theta subunit compare
EX28DRAFT_2845 -2.5 -1.2 Protein of unknown function (DUF3561) compare
EX28DRAFT_2531 -2.5 -2.6 endopeptidase La compare
EX28DRAFT_1719 -2.5 -0.6 integration host factor, alpha subunit compare
EX28DRAFT_0621 -2.5 -4.2 flagellar biosynthetic protein FliS compare
EX28DRAFT_0132 -2.5 -2.5 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_4479 -2.4 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0764 -2.4 -2.9 fatty acid metabolism transcriptional regulator FadR compare
EX28DRAFT_1700 -2.4 -0.8 hypothetical protein compare
EX28DRAFT_2148 -2.4 -9.1 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3667 -2.4 -3.1 3-isopropylmalate dehydratase, small subunit compare
EX28DRAFT_1922 -2.3 -0.8 Stress-induced bacterial acidophilic repeat motif compare
EX28DRAFT_4421 -2.3 -0.7 N-acetylglutamate kinase (EC 2.7.2.8) compare
EX28DRAFT_2043 -2.3 -7.2 transcriptional regulator, AsnC family compare
EX28DRAFT_4348 -2.3 -1.4 oxygen-independent coproporphyrinogen III oxidase compare
EX28DRAFT_2050 -2.3 -9.3 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_2265 -2.3 -0.8 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0306 -2.3 -9.8 transcriptional regulator, LacI family compare
EX28DRAFT_2651 -2.2 -5.4 glutamate 5-kinase compare
EX28DRAFT_0932 -2.2 -2.6 tryptophan synthase, alpha chain (EC 4.2.1.20) compare
EX28DRAFT_0804 -2.2 -0.7 type VI secretion system lysozyme-like protein compare
EX28DRAFT_0545 -2.2 -2.1 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_2250 -2.2 -1.7 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0521 -2.2 -3.2 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_0918 -2.2 -0.9 Ogr/Delta-like zinc finger compare
EX28DRAFT_1500 -2.2 -1.3 Predicted transcriptional regulators compare
EX28DRAFT_2264 -2.2 -4.5 succinyl-CoA synthetase, beta subunit compare
EX28DRAFT_2543 -2.2 -3.4 protoheme IX farnesyltransferase compare
EX28DRAFT_2958 -2.2 -0.5 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_3044 -2.1 -2.8 TonB system transport protein ExbD, group 1 compare
EX28DRAFT_0074 -2.1 -7.5 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_2846 -2.1 -3.7 adenylyl-sulfate kinase compare
EX28DRAFT_3668 -2.1 -7.6 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_3224 -2.1 -5.1 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_3144 -2.1 -5.3 Uncharacterized conserved protein compare
EX28DRAFT_3046 -2.1 -4.4 cystathionine beta-lyase, bacterial compare
EX28DRAFT_0661 -2.1 -3.1 Flagellar motor protein compare
EX28DRAFT_4273 -2.1 -1.9 carbohydrate kinase, thermoresistant glucokinase family compare
EX28DRAFT_2269 -2.1 -5.3 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_2893 -2.1 -6.5 N-acetylglutamate synthase (EC 2.3.1.1) compare
EX28DRAFT_3711 -2.0 -0.5 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_3754 -2.0 -0.6 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_3647 -2.0 -3.5 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_2974 -2.0 -4.5 transketolase, bacterial and yeast compare
EX28DRAFT_1293 -2.0 -0.6 hypothetical protein compare
EX28DRAFT_0091 -2.0 -0.7 hypothetical protein compare
EX28DRAFT_3401 -2.0 -0.8 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_3597 -2.0 -1.4 DNA repair protein RadA compare
EX28DRAFT_3669 -2.0 -4.8 3-isopropylmalate dehydrogenase compare
EX28DRAFT_3645 -2.0 -1.4 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_4331 -2.0 -6.4 homoserine O-succinyltransferase (EC 2.3.1.46) compare
EX28DRAFT_3375 -2.0 -0.8 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_1347 -2.0 -2.1 transcriptional regulator, DeoR family compare
EX28DRAFT_0406 -1.9 -4.1 Transcriptional regulators compare
EX28DRAFT_3384 -1.9 -3.7 Protein of unknown function (DUF1471) compare
EX28DRAFT_1882 -1.9 -3.5 Periplasmic glucans biosynthesis protein compare
EX28DRAFT_4182 -1.9 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_2225 -1.9 -4.8 3-carboxymuconate cyclase compare
EX28DRAFT_3825 -1.9 -1.3 YsaB-like lipoprotein compare
EX28DRAFT_3410 -1.9 -1.4 hypothetical protein compare
EX28DRAFT_0076 -1.9 -2.1 elongation factor 4 compare
EX28DRAFT_0526 -1.9 -1.5 hypothetical protein compare
EX28DRAFT_0529 -1.9 -1.8 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_4457 -1.9 -4.0 nucleotide sugar dehydrogenase compare
EX28DRAFT_3616 -1.9 -2.8 threonine synthase compare
EX28DRAFT_3923 -1.9 -3.9 Predicted transcriptional regulators compare
EX28DRAFT_3353 -1.8 -1.3 Fumarate reductase subunit C compare
EX28DRAFT_4061 -1.8 -3.2 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_0755 -1.8 -3.6 ribonuclease D compare
EX28DRAFT_2452 -1.8 -6.4 transcriptional regulator, LacI family compare
EX28DRAFT_3418 -1.8 -0.5 Bacterial regulatory helix-turn-helix protein, lysR family compare
EX28DRAFT_2492 -1.8 -1.3 Protein of unknown function (DUF2496) compare
EX28DRAFT_3670 -1.8 -6.6 2-isopropylmalate synthase (EC 2.3.3.13) compare
EX28DRAFT_2948 -1.8 -5.1 Uncharacterized conserved protein compare
EX28DRAFT_0292 -1.8 -1.7 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_2695 -1.8 -1.7 pseudouridine synthase, RluA family compare
EX28DRAFT_0972 -1.8 -1.1 ABC-type antimicrobial peptide transport system, permease component compare
EX28DRAFT_0214 -1.8 -2.2 cysteine synthase A compare
EX28DRAFT_1493 -1.8 -4.2 Transcriptional regulator/sugar kinase compare
EX28DRAFT_0073 -1.8 -0.7 Negative regulator of sigma E activity compare
EX28DRAFT_4411 -1.7 -8.3 cystathionine gamma-synthase (EC 2.5.1.48) compare
EX28DRAFT_1385 -1.7 -1.9 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) compare
EX28DRAFT_4419 -1.7 -1.4 acetylornithine deacetylase (ArgE) compare
EX28DRAFT_3282 -1.7 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3383 -1.7 -0.7 Alpha/beta hydrolase family compare
EX28DRAFT_1437 -1.7 -2.3 Uncharacterized membrane protein compare
EX28DRAFT_4446 -1.7 -6.2 ketol-acid reductoisomerase (EC 1.1.1.86) compare
EX28DRAFT_4181 -1.7 -0.9 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
EX28DRAFT_1497 -1.7 -0.6 hypothetical protein compare
EX28DRAFT_4459 -1.7 -4.0 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_2287 -1.7 -4.0 phosphoglucomutase, alpha-D-glucose phosphate-specific compare
EX28DRAFT_2963 -1.7 -2.6 RNA compare
EX28DRAFT_3440 -1.7 -1.3 trehalose operon repressor, proteobacterial compare
EX28DRAFT_4350 -1.7 -0.6 nitrogen regulation protein NR(I) compare
EX28DRAFT_4274 -1.7 -4.7 transcriptional regulator, LacI family compare
EX28DRAFT_4422 -1.7 -5.0 argininosuccinate lyase compare
EX28DRAFT_2796 -1.7 -3.2 transcriptional regulator, DeoR family compare
EX28DRAFT_2046 -1.6 -1.1 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_0936 -1.6 -3.2 anthranilate synthase, component I (EC 4.1.3.27) compare
EX28DRAFT_2852 -1.6 -6.3 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_0970 -1.6 -2.4 ABC-type antimicrobial peptide transport system, ATPase component compare
EX28DRAFT_0065 -1.6 -0.6 thioredoxin compare
EX28DRAFT_2916 -1.6 -5.7 diaminopimelate decarboxylase compare
EX28DRAFT_3173 -1.6 -5.5 Pirin-related protein compare
EX28DRAFT_2720 -1.6 -4.9 Small protein A (tmRNA-binding) compare
EX28DRAFT_3901 -1.6 -4.7 ATP-dependent DNA helicase RecG (EC 3.6.1.-) compare
EX28DRAFT_2331 -1.6 -5.4 D-alanyl-D-alanine carboxypeptidase compare
EX28DRAFT_2126 -1.6 -2.7 transcriptional regulator, DeoR family compare
EX28DRAFT_1250 -1.6 -0.7 Protein of unknown function (DUF421) compare
EX28DRAFT_2271 -1.6 -3.4 hypothetical protein compare
EX28DRAFT_3708 -1.6 -0.6 Transcriptional regulators compare
EX28DRAFT_0166 -1.6 -6.7 polyphosphate kinase 1 compare
EX28DRAFT_3259 -1.6 -2.7 Predicted P-loop-containing kinase compare
EX28DRAFT_0536 -1.6 -1.5 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit compare
EX28DRAFT_0092 -1.6 -1.2 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_1834 -1.6 -2.9 beta-ketoacyl-acyl-carrier-protein synthase II compare
EX28DRAFT_3185 -1.6 -1.9 transcriptional regulator, DeoR family compare
EX28DRAFT_1845 -1.6 -0.8 RNA compare
EX28DRAFT_0934 -1.6 -5.7 indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
EX28DRAFT_4120 -1.6 -2.0 Glycerol-3-phosphate dehydrogenase compare
EX28DRAFT_3337 -1.6 -1.2 Protein affecting phage T7 exclusion by the F plasmid compare
EX28DRAFT_0876 -1.6 -0.4 hypothetical protein compare
EX28DRAFT_2701 -1.5 -4.3 chorismate mutase (EC 5.4.99.5) compare
EX28DRAFT_2755 -1.5 -1.8 DNA-binding protein H-NS compare
EX28DRAFT_0155 -1.5 -2.7 Sugar phosphate isomerases/epimerases compare
EX28DRAFT_3419 -1.5 -7.3 Fructose-1,6-bisphosphatase compare
EX28DRAFT_3671 -1.5 -2.3 RNA compare


Specific Phenotypes

For 5 genes in this experiment

For in planta Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days in Enterobacter asburiae PDN3

For in planta Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days across organisms