Experiment set1IT002 for Pseudomonas simiae WCS417

Compare to:

LB with Cobalt chloride hexahydrate 0.16 mM

200 most important genes:

  gene name fitness t score description  
PS417_24155 -3.3 -5.0 ATP-binding protein compare
PS417_27835 -2.8 -8.9 endoribonuclease compare
PS417_22520 -2.5 -4.3 histidine kinase compare
PS417_05695 -2.3 -5.8 transcriptional regulator compare
PS417_19350 -2.1 -6.9 GTP cyclohydrolase compare
PS417_23775 -1.7 -2.6 exodeoxyribonuclease V subunit beta compare
PS417_24370 -1.5 -1.3 (2Fe-2S)-binding protein compare
PS417_14995 -1.5 -6.5 serine/threonine protein kinase conserved
PS417_22445 -1.4 -4.3 ATP-dependent DNA helicase RuvB compare
PS417_23770 -1.4 -3.1 exodeoxyribonuclease V subunit alpha compare
PS417_23900 -1.4 -7.5 poly(A) polymerase compare
PS417_00045 -1.4 -2.9 glycerol acyltransferase compare
PS417_20855 -1.3 -2.1 hypothetical protein compare
PS417_23915 -1.3 -5.1 pantoate--beta-alanine ligase compare
PS417_27245 -1.2 -5.2 aminotransferase DegT compare
PS417_26900 -1.2 -1.4 L-cystine transporter tcyP compare
PS417_23025 -1.2 -6.3 murein transglycosylase compare
PS417_05570 -1.2 -5.9 DeoR faimly transcriptional regulator compare
PS417_24070 -1.1 -4.9 recombination and repair protein compare
PS417_23825 -1.1 -5.2 penicillin-binding protein compare
PS417_22205 -1.1 -6.2 potassium transporter TrkH compare
PS417_02210 -1.1 -6.0 diguanylate cyclase compare
PS417_02070 -1.1 -1.4 membrane protein compare
PS417_12670 -1.1 -2.8 hypothetical protein compare
PS417_24835 -1.1 -4.6 hypothetical protein compare
PS417_24705 -1.1 -4.1 D-alanyl-D-alanine carboxypeptidase compare
PS417_00080 -1.0 -5.2 potassium transporter peripheral membrane component compare
PS417_07080 -1.0 -4.7 porin compare
PS417_00455 -1.0 -2.1 hypothetical protein compare
PS417_00405 -1.0 -4.9 DNA polymerase I compare
PS417_27870 -1.0 -3.5 ATP-dependent DNA helicase RecG compare
PS417_23360 -1.0 -1.2 hypothetical protein compare
PS417_28140 -1.0 -2.7 asparaginase compare
PS417_20985 -1.0 -1.7 porin compare
PS417_02280 -1.0 -1.2 GlcNAc-PI de-N-acetylase compare
PS417_06355 -1.0 -2.4 protein-L-isoaspartate O-methyltransferase compare
PS417_08365 -0.9 -1.0 hypothetical protein compare
PS417_15780 -0.9 -2.4 membrane protein compare
PS417_08410 -0.9 -1.7 hypothetical protein compare
PS417_00510 -0.9 -1.3 membrane protein compare
PS417_02555 -0.9 -6.9 exoribonuclease R compare
PS417_09325 -0.9 -4.1 peptidase S41 compare
PS417_09300 -0.9 -2.5 peptidylprolyl isomerase compare
PS417_06445 -0.8 -1.7 iron-siderophore ABC transporter permease compare
PS417_25710 -0.8 -1.5 indole-3-glycerol-phosphate synthase compare
PS417_23375 -0.8 -1.7 cytochrome C oxidase compare
PS417_08580 -0.8 -4.3 histidine kinase compare
PS417_05065 -0.8 -2.1 hypothetical protein compare
PS417_15885 -0.8 -1.8 GCN5 family acetyltransferase compare
PS417_12730 -0.8 -1.9 glycosyltransferase compare
PS417_08990 -0.8 -2.1 ABC transporter substrate-binding protein compare
PS417_15745 -0.8 -1.9 lipid carrier protein compare
PS417_25705 -0.8 -3.0 lipoate--protein ligase compare
PS417_04595 -0.8 -2.4 cell division protein MraZ compare
PS417_16515 -0.8 -2.2 Clp protease ClpS compare
PS417_18425 -0.8 -1.4 sporulation protein compare
PS417_14805 -0.8 -2.0 AraC family transcriptional regulator compare
PS417_12400 -0.8 -1.9 oxidoreductase compare
PS417_14825 -0.8 -1.9 hypothetical protein compare
PS417_15750 -0.7 -1.6 protease compare
PS417_02805 -0.7 -1.4 urease subunit gamma compare
PS417_15110 -0.7 -3.5 protein BatD compare
PS417_09245 -0.7 -1.1 recombinase RdgC compare
PS417_26470 -0.7 -1.0 cytochrome C compare
PS417_24630 -0.7 -2.5 ATP-binding protein compare
PS417_18460 -0.7 -2.5 transcriptional regulator compare
PS417_11885 -0.7 -2.7 Inositol transport system sugar-binding protein (from data) compare
PS417_07770 -0.7 -1.5 hypothetical protein compare
PS417_16510 -0.7 -2.0 Clp protease ClpX compare
PS417_19520 -0.7 -2.1 transcriptional regulator compare
PS417_15095 -0.7 -2.4 hypothetical protein compare
PS417_05095 -0.7 -2.9 membrane protein compare
PS417_16715 -0.7 -1.1 DoxX family protein compare
PS417_16490 -0.7 -1.3 cell division protein FtsK compare
PS417_22630 -0.7 -1.7 hypothetical protein compare
PS417_00495 -0.7 -2.6 ABC transporter permease compare
PS417_00030 -0.7 -2.6 hypothetical protein compare
PS417_03155 -0.7 -2.5 transcriptional regulator compare
PS417_20665 -0.7 -2.9 hypothetical protein compare
PS417_03380 -0.6 -0.9 hypothetical protein compare
PS417_19195 -0.6 -2.3 hypothetical protein compare
PS417_25645 -0.6 -2.1 peptidase M23 compare
PS417_12160 -0.6 -2.5 Fis family transcriptional regulator compare
PS417_15465 -0.6 -2.2 carboxynorspermidine decarboxylase compare
PS417_24310 -0.6 -2.4 ankyrin compare
PS417_18495 -0.6 -2.3 hypothetical protein compare
PS417_23910 -0.6 -3.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_06200 -0.6 -2.7 protein-PII uridylyltransferase compare
PS417_14925 -0.6 -1.4 2-methylcitrate dehydratase compare
PS417_01095 -0.6 -1.2 amino acid ABC transporter ATP-binding protein compare
PS417_06165 -0.6 -2.9 thiamine biosynthesis protein ThiF compare
PS417_03350 -0.6 -2.1 cytochrome C peroxidase compare
PS417_28145 -0.6 -1.9 AraC family transcriptional regulator compare
PS417_02385 -0.6 -1.2 esterase compare
PS417_21430 -0.6 -1.4 3-oxoacyl-ACP synthase compare
PS417_09235 -0.6 -0.8 molecular chaperone compare
PS417_19425 -0.6 -0.7 allantoicase compare
PS417_00190 -0.6 -1.8 LysR family transcriptional regulator compare
PS417_16855 -0.6 -1.3 cation:proton antiporter compare
PS417_21515 -0.6 -3.9 transcriptional regulator compare
PS417_14305 -0.6 -2.4 hydroxyproline-2-epimerase compare
PS417_05235 -0.6 -1.1 peptidase inhibitor I42 compare
PS417_09695 -0.6 -1.5 hydrolase compare
PS417_11305 -0.6 -2.6 general secretion pathway protein GspF compare
PS417_05100 -0.6 -1.4 RNA polymerase sigma factor compare
PS417_13205 -0.6 -1.4 isochorismate-pyruvate lyase compare
PS417_26650 -0.6 -4.0 histidine kinase compare
PS417_13445 -0.6 -1.1 D-aminopeptidase compare
PS417_01005 -0.6 -2.1 methionine ABC transporter substrate-binding protein compare
PS417_09010 -0.6 -1.0 phosphohistidine phosphatase compare
PS417_13010 -0.6 -1.9 alpha/beta hydrolase compare
PS417_05070 -0.6 -3.6 serine/threonine protein kinase compare
PS417_12820 -0.6 -1.8 hypothetical protein compare
PS417_03685 -0.6 -2.5 FAD-dependent oxidoreductase compare
PS417_15085 -0.6 -2.3 ATPase AAA compare
PS417_11770 -0.6 -1.5 pyruvate dehydrogenase compare
PS417_07120 -0.6 -2.7 RNA polymerase sigma-H factor compare
PS417_05905 -0.6 -1.3 hypothetical protein compare
PS417_19590 -0.6 -3.2 enoyl-CoA hydratase compare
PS417_12310 -0.6 -3.2 methionine synthase compare
PS417_22575 -0.6 -2.8 exonuclease I compare
PS417_26520 -0.6 -2.4 amino acid ABC transporter substrate-binding protein compare
PS417_01605 -0.6 -1.1 phosphoglycerate mutase compare
PS417_21425 -0.6 -0.8 4-amino-4-deoxychorismate lyase compare
PS417_26050 -0.6 -2.3 response regulator compare
PS417_23420 -0.6 -2.8 LuxR family transcriptional regulator compare
PS417_04500 -0.6 -1.1 hypothetical protein compare
PS417_17840 -0.6 -1.2 betaine-aldehyde dehydrogenase compare
PS417_21125 -0.6 -2.7 phosphoadenosine phosphosulfate reductase compare
PS417_24650 -0.6 -1.1 membrane protein compare
PS417_26370 -0.6 -2.5 RNA helicase compare
PS417_19605 -0.5 -1.1 hypothetical protein compare
PS417_17145 -0.5 -2.6 2-aminoethylphosphonate--pyruvate aminotransferase compare
PS417_20610 -0.5 -0.7 hypothetical protein compare
PS417_02695 -0.5 -1.2 protein hupE compare
PS417_26260 -0.5 -1.1 hypothetical protein compare
PS417_18990 -0.5 -1.8 membrane protein compare
PS417_27595 -0.5 -1.2 recombinase XerC compare
PS417_03200 -0.5 -1.3 ArsR family transcriptional regulator compare
PS417_17405 -0.5 -1.4 AraC family transcriptional regulator compare
PS417_06350 -0.5 -3.2 stationary phase survival protein SurE compare
PS417_02980 -0.5 -0.7 chemotaxis protein compare
PS417_03365 -0.5 -2.3 transcriptional regulator compare
PS417_26150 -0.5 -1.3 acyltransferase compare
PS417_10240 -0.5 -2.1 hypothetical protein compare
PS417_18420 -0.5 -2.4 deoxyribonuclease compare
PS417_10285 -0.5 -2.3 sodium:proton antiporter compare
PS417_23385 -0.5 -3.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_27800 -0.5 -2.3 exodeoxyribonuclease III compare
PS417_06925 -0.5 -2.1 LysR family transcriptional regulator compare
PS417_12725 -0.5 -1.6 AraC family transcriptional regulator compare
PS417_15540 -0.5 -0.8 NUDIX hydrolase compare
PS417_18400 -0.5 -2.0 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_23570 -0.5 -2.4 hypothetical protein compare
PS417_26660 -0.5 -1.5 protein PilI compare
PS417_15100 -0.5 -1.8 BatB protein compare
PS417_14045 -0.5 -1.8 alkyl hydroperoxide reductase compare
PS417_19240 -0.5 -1.6 peptidase M42 compare
PS417_27055 -0.5 -1.7 hypothetical protein compare
PS417_04650 -0.5 -0.9 D-alanine--D-alanine ligase compare
PS417_16850 -0.5 -1.9 cation:proton antiporter compare
PS417_20755 -0.5 -1.7 membrane protein compare
PS417_06620 -0.5 -1.4 hypothetical protein compare
PS417_17980 -0.5 -0.9 ABC transporter permease compare
PS417_05090 -0.5 -3.5 ferric citrate outer membrane transporter (fecA) (from data) compare
PS417_15510 -0.5 -0.7 hypothetical protein compare
PS417_08135 -0.5 -2.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_13145 -0.5 -1.3 50S ribosomal protein L21 compare
PS417_28040 -0.5 -2.4 histidine kinase compare
PS417_02405 -0.5 -1.8 hypothetical protein compare
PS417_11360 -0.5 -1.2 energy transducer TonB compare
PS417_17960 -0.5 -2.1 LysR family transcriptional regulator compare
PS417_14600 -0.5 -1.8 bleomycin resistance protein compare
PS417_21345 -0.5 -1.8 GNAT family acetyltransferase compare
PS417_13165 -0.5 -0.8 peroxidase compare
PS417_18445 -0.5 -1.6 glycerol-3-phosphatase compare
PS417_11375 -0.5 -1.3 hypothetical protein compare
PS417_07455 -0.5 -0.8 glutamine amidotransferase compare
PS417_19645 -0.5 -1.2 chemotaxis protein compare
PS417_04735 -0.5 -2.8 LysR family transcriptional regulator compare
PS417_04270 -0.5 -2.7 ribonuclease G compare
PS417_06245 -0.5 -1.1 zinc metallopeptidase RseP compare
PS417_01510 -0.5 -1.2 hypothetical protein compare
PS417_08200 -0.5 -1.3 hypothetical protein compare
PS417_08025 -0.5 -0.9 acetylornithine aminotransferase compare
PS417_06965 -0.5 -1.7 cysteine methyltransferase compare
PS417_10050 -0.5 -1.4 hypothetical protein compare
PS417_27170 -0.5 -2.2 ABC transporter substrate-binding protein compare
PS417_22175 -0.5 -1.1 amino acid transporter LysE compare
PS417_20160 -0.5 -1.8 cysteine synthase compare
PS417_09330 -0.5 -1.7 NAD(P)H-quinone oxidoreductase compare
PS417_17160 -0.5 -0.7 1-aminocyclopropane-1-carboxylate deaminase compare
PS417_06770 -0.5 -2.3 multidrug transporter compare
PS417_01105 -0.5 -2.3 cystine transporter subunit compare
PS417_19650 -0.5 -1.8 chemotaxis protein CheW compare
PS417_07860 -0.5 -1.9 hypothetical protein compare
PS417_07560 -0.5 -0.8 universal stress protein UspA compare
PS417_11930 -0.5 -2.6 hypothetical protein compare
PS417_11120 -0.5 -1.7 UDP pyrophosphate phosphatase compare
PS417_13300 -0.5 -1.8 short-chain dehydrogenase compare


Specific Phenotypes

For 7 genes in this experiment

For stress Cobalt chloride hexahydrate in Pseudomonas simiae WCS417

For stress Cobalt chloride hexahydrate across organisms