Experiment set1IT002 for Enterobacter asburiae PDN3

Compare to:

Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

200 most important genes:

  gene name fitness t score description  
EX28DRAFT_2867 -6.6 -4.5 glycerate kinase compare
EX28DRAFT_0328 -5.8 -1.2 NADH:ubiquinone oxidoreductase subunit 1 (chain H) compare
EX28DRAFT_0325 -5.8 -4.4 NADH-quinone oxidoreductase, F subunit compare
EX28DRAFT_0331 -5.8 -2.0 NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) compare
EX28DRAFT_0323 -5.3 -4.2 NADH (or F420H2) dehydrogenase, subunit C compare
EX28DRAFT_0329 -5.3 -5.1 NADH-quinone oxidoreductase, chain I compare
EX28DRAFT_0322 -4.9 -7.2 NADH-quinone oxidoreductase, B subunit compare
EX28DRAFT_2252 -4.7 -1.9 TolA protein compare
EX28DRAFT_3883 -4.6 -3.2 Glycosyltransferases involved in cell wall biogenesis compare
EX28DRAFT_0321 -4.5 -0.9 NADH:ubiquinone oxidoreductase subunit 3 (chain A) compare
EX28DRAFT_2774 -4.5 -5.8 glutamate-cysteine ligase (EC 6.3.2.2) compare
EX28DRAFT_4156 -4.4 -1.5 ribulose-phosphate 3-epimerase compare
EX28DRAFT_0922 -4.4 -1.7 TonB family C-terminal domain compare
EX28DRAFT_3058 -4.3 -2.9 Signal transduction histidine kinase compare
EX28DRAFT_0726 -4.3 -3.0 C-terminal peptidase (prc) compare
EX28DRAFT_4386 -4.3 -3.1 Signal transduction histidine kinase compare
EX28DRAFT_0333 -4.2 -5.9 proton-translocating NADH-quinone oxidoreductase, chain M compare
EX28DRAFT_2270 -4.2 -0.8 succinate dehydrogenase subunit C (EC 1.3.5.1) compare
EX28DRAFT_4269 -4.2 -0.8 SOS regulatory protein LexA compare
EX28DRAFT_1986 -4.1 -1.2 Outer membrane protein and related peptidoglycan-associated (lipo)proteins compare
EX28DRAFT_2548 -4.0 -3.7 tRNA sulfurtransferase ThiI/thiazole biosynthesis domain compare
EX28DRAFT_4184 -3.9 -0.8 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3172 -3.9 -6.6 Transcriptional regulator compare
EX28DRAFT_0332 -3.9 -6.1 proton-translocating NADH-quinone oxidoreductase, chain L compare
EX28DRAFT_0857 -3.8 -1.1 tRNA compare
EX28DRAFT_3710 -3.7 -6.6 pyruvate dehydrogenase E1 component, homodimeric type compare
EX28DRAFT_3401 -3.7 -1.1 3'(2'),5'-bisphosphate nucleotidase, bacterial compare
EX28DRAFT_0272 -3.7 -1.1 phosphohistidine phosphatase, SixA compare
EX28DRAFT_2945 -3.7 -1.5 tyrosine recombinase XerD compare
EX28DRAFT_2864 -3.6 -5.4 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_3645 -3.6 -1.9 ribosomal RNA small subunit methyltransferase A compare
EX28DRAFT_0769 -3.5 -1.0 Uncharacterized proteins, homologs of microcin C7 resistance protein MccF compare
EX28DRAFT_0706 -3.5 -2.0 Entner-Doudoroff aldolase compare
EX28DRAFT_1382 -3.5 -1.4 transcriptional regulator, TetR family compare
EX28DRAFT_4152 -3.4 -1.0 shikimate kinase (EC 2.7.1.71) compare
EX28DRAFT_3512 -3.4 -1.0 Uncharacterized conserved small protein compare
EX28DRAFT_0541 -3.4 -1.0 RNA compare
EX28DRAFT_0073 -3.3 -0.9 Negative regulator of sigma E activity compare
EX28DRAFT_3849 -3.3 -2.4 PTS system, mannitol-specific IIC component compare
EX28DRAFT_3079 -3.3 -0.7 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_3073 -3.2 -4.7 type I secretion outer membrane protein, TolC family compare
EX28DRAFT_0038 -3.2 -1.5 K+ transport systems, NAD-binding component compare
EX28DRAFT_1771 -3.2 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0312 -3.2 -1.8 phosphate acetyltransferase compare
EX28DRAFT_4478 -3.2 -4.9 diaminopimelate epimerase (EC 5.1.1.7) compare
EX28DRAFT_2265 -3.2 -0.9 2-oxoglutarate dehydrogenase E2 component (EC 2.3.1.61) compare
EX28DRAFT_0069 -3.1 -1.2 Superfamily II DNA and RNA helicases compare
EX28DRAFT_2298 -3.1 -8.4 N-acetylglucosamine-6-phosphate deacetylase compare
EX28DRAFT_2272 -3.1 -7.5 citrate synthase (EC 2.3.3.1) compare
EX28DRAFT_0523 -3.0 -1.1 Glycosyltransferase like family 2 compare
EX28DRAFT_3898 -3.0 -1.4 DNA-directed RNA polymerase subunit omega (EC 2.7.7.6) compare
EX28DRAFT_2974 -3.0 -6.2 transketolase, bacterial and yeast compare
EX28DRAFT_0132 -3.0 -2.3 outer membrane assembly lipoprotein YfgL compare
EX28DRAFT_0330 -3.0 -1.4 NADH:ubiquinone oxidoreductase subunit 6 (chain J) compare
EX28DRAFT_0327 -3.0 -4.1 NADH-quinone oxidoreductase, chain G compare
EX28DRAFT_2067 -2.9 -1.2 Transglycosylase SLT domain compare
EX28DRAFT_3647 -2.9 -4.3 periplasmic chaperone for outer membrane proteins SurA compare
EX28DRAFT_1719 -2.9 -0.8 integration host factor, alpha subunit compare
EX28DRAFT_4297 -2.9 -0.8 cell division ATP-binding protein FtsE compare
EX28DRAFT_4191 -2.9 -2.0 small GTP-binding protein domain compare
EX28DRAFT_2985 -2.9 -5.2 glutathione synthase (EC 6.3.2.3) compare
EX28DRAFT_3368 -2.8 -0.8 tRNA dimethylallyltransferase compare
EX28DRAFT_3643 -2.8 -2.9 Bis(5'nucleosyl)-tetraphosphatase, ApaH compare
EX28DRAFT_0334 -2.7 -1.6 proton-translocating NADH-quinone oxidoreductase, chain N compare
EX28DRAFT_4155 -2.7 -2.0 DNA adenine methylase (dam) compare
EX28DRAFT_2958 -2.6 -0.7 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family compare
EX28DRAFT_4380 -2.6 -0.9 Protein of unknown function (DUF1471) compare
EX28DRAFT_0111 -2.6 -1.2 FeS cluster assembly scaffold IscU compare
EX28DRAFT_1838 -2.5 -2.6 3-oxoacyl-(acyl-carrier-protein) synthase III compare
EX28DRAFT_2677 -2.5 -1.0 hypothetical protein compare
EX28DRAFT_3519 -2.5 -0.8 Predicted transcriptional regulators compare
EX28DRAFT_2938 -2.4 -1.3 tRNA compare
EX28DRAFT_2027 -2.4 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) compare
EX28DRAFT_3711 -2.4 -0.7 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form compare
EX28DRAFT_0108 -2.4 -0.8 transcriptional regulator, BadM/Rrf2 family compare
EX28DRAFT_1396 -2.4 -0.8 Amidases related to nicotinamidase compare
EX28DRAFT_0091 -2.4 -1.0 hypothetical protein compare
EX28DRAFT_3900 -2.3 -1.7 SpoU rRNA Methylase family/SpoU, rRNA methylase, C-terminal compare
EX28DRAFT_0129 -2.3 -0.9 RNA compare
EX28DRAFT_1620 -2.3 -0.9 hypothetical protein compare
EX28DRAFT_0526 -2.3 -2.1 hypothetical protein compare
EX28DRAFT_0755 -2.2 -5.1 ribonuclease D compare
EX28DRAFT_3045 -2.2 -2.6 tonB-system energizer ExbB compare
EX28DRAFT_3675 -2.2 -6.7 transcriptional regulator, LacI family compare
EX28DRAFT_2846 -2.2 -3.3 adenylyl-sulfate kinase compare
EX28DRAFT_4452 -2.2 -1.5 thioredoxin compare
EX28DRAFT_4384 -2.2 -3.3 Superoxide dismutase compare
EX28DRAFT_2531 -2.2 -2.0 endopeptidase La compare
EX28DRAFT_3315 -2.1 -0.6 Protein of unknown function (DUF2556) compare
EX28DRAFT_3314 -2.1 -0.4 Factor for inversion stimulation Fis, transcriptional activator compare
EX28DRAFT_3285 -2.1 -4.2 malate dehydrogenase (NAD) (EC 1.1.1.37) compare
EX28DRAFT_3278 -2.1 -1.8 Glutathione S-transferase compare
EX28DRAFT_0324 -2.1 -1.4 NADH-quinone oxidoreductase, E subunit compare
EX28DRAFT_0529 -2.0 -2.5 6-phosphogluconate dehydrogenase (decarboxylating) compare
EX28DRAFT_3434 -2.0 -1.9 addiction module antitoxin, RelB/DinJ family compare
EX28DRAFT_2851 -2.0 -2.5 phosphoadenosine phosphosulfate reductase, thioredoxin dependent compare
EX28DRAFT_2263 -1.9 -2.9 succinyl-CoA synthetase, alpha subunit compare
EX28DRAFT_0730 -1.9 -1.3 YobH-like protein compare
EX28DRAFT_4461 -1.9 -2.4 4-alpha-L-fucosyltransferase glycosyl transferase group 56 compare
EX28DRAFT_2813 -1.9 -2.0 Formate hydrogenlyase subunit 4 compare
EX28DRAFT_1037 -1.9 -0.9 Protein of unknown function (DUF2526) compare
EX28DRAFT_4061 -1.8 -4.2 NADPH-glutathione reductase (EC 1.8.1.7) compare
EX28DRAFT_4350 -1.8 -0.9 nitrogen regulation protein NR(I) compare
EX28DRAFT_1845 -1.8 -1.0 RNA compare
EX28DRAFT_0715 -1.7 -1.3 Protein of unknown function (DUF2511) compare
EX28DRAFT_2045 -1.7 -0.6 thiol reductant ABC exporter, CydD subunit compare
EX28DRAFT_2240 -1.7 -1.8 phosphoglycerate mutase, BPG-dependent, family 1 compare
EX28DRAFT_4426 -1.7 -0.8 transcriptional regulator, TetR family compare
EX28DRAFT_3041 -1.7 -2.0 hypothetical protein compare
EX28DRAFT_2585 -1.7 -1.1 pyrroline-5-carboxylate reductase compare
EX28DRAFT_4318 -1.7 -2.9 Glucose-6-phosphate isomerase compare
EX28DRAFT_2214 -1.7 -1.0 malonyl-acyl carrier protein O-methyltransferase BioC compare
EX28DRAFT_3507 -1.6 -1.0 Response regulator compare
EX28DRAFT_2753 -1.6 -0.9 Rhodanese-related sulfurtransferase compare
EX28DRAFT_0778 -1.6 -0.8 hypothetical protein compare
EX28DRAFT_2963 -1.6 -3.2 RNA compare
EX28DRAFT_0621 -1.6 -4.0 flagellar biosynthetic protein FliS compare
EX28DRAFT_2043 -1.6 -7.9 transcriptional regulator, AsnC family compare
EX28DRAFT_3754 -1.6 -0.7 UTP--GlnB (protein PII) uridylyltransferase, GlnD compare
EX28DRAFT_1347 -1.6 -2.5 transcriptional regulator, DeoR family compare
EX28DRAFT_3137 -1.6 -0.9 Predicted transcriptional regulators compare
EX28DRAFT_0214 -1.6 -2.8 cysteine synthase A compare
EX28DRAFT_2695 -1.6 -1.8 pseudouridine synthase, RluA family compare
EX28DRAFT_2250 -1.5 -1.8 peptidoglycan-associated lipoprotein compare
EX28DRAFT_0545 -1.5 -2.4 Exodeoxyribonuclease I subunit C (EC 3.1.11.1) compare
EX28DRAFT_4422 -1.5 -6.7 argininosuccinate lyase compare
EX28DRAFT_0813 -1.5 -2.3 Uncharacterized conserved protein compare
EX28DRAFT_1596 -1.5 -0.6 Protein of unknown function (DUF1019) compare
EX28DRAFT_3566 -1.5 -1.3 Uncharacterized conserved protein compare
EX28DRAFT_2148 -1.5 -3.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_1360 -1.5 -1.2 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0092 -1.5 -1.4 phosphoribosylformylglycinamidine synthase, single chain form compare
EX28DRAFT_2650 -1.5 -4.0 glutamate-5-semialdehyde dehydrogenase (EC 1.2.1.41) compare
EX28DRAFT_4362 -1.4 -3.4 transcriptional regulator, DeoR family compare
EX28DRAFT_0286 -1.4 -1.1 tRNA pseudouridine(38-40) synthase compare
EX28DRAFT_3224 -1.4 -3.9 argininosuccinate synthase (EC 6.3.4.5) compare
EX28DRAFT_1009 -1.4 -1.0 hypothetical protein compare
EX28DRAFT_2132 -1.4 -2.6 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components compare
EX28DRAFT_2299 -1.4 -5.1 Transcriptional regulator/sugar kinase compare
EX28DRAFT_0948 -1.4 -0.8 hypothetical protein compare
EX28DRAFT_3851 -1.4 -5.3 Transcriptional regulator compare
EX28DRAFT_0521 -1.4 -2.0 Nucleoside-diphosphate-sugar epimerases compare
EX28DRAFT_3668 -1.4 -4.8 3-isopropylmalate dehydratase, large subunit compare
EX28DRAFT_2853 -1.4 -4.3 sulfite reductase [NADPH] flavoprotein, alpha-component compare
EX28DRAFT_1626 -1.4 -0.9 electron transport complex, RnfABCDGE type, D subunit compare
EX28DRAFT_0292 -1.4 -1.6 amidophosphoribosyltransferase (EC 2.4.2.14) compare
EX28DRAFT_4459 -1.4 -4.4 TDP-4-keto-6-deoxy-D-glucose transaminase compare
EX28DRAFT_0534 -1.4 -3.4 imidazoleglycerol phosphate synthase, cyclase subunit compare
EX28DRAFT_4457 -1.4 -3.0 nucleotide sugar dehydrogenase compare
EX28DRAFT_1250 -1.4 -0.8 Protein of unknown function (DUF421) compare
EX28DRAFT_0666 -1.3 -2.1 Uncharacterized secreted protein compare
EX28DRAFT_2845 -1.3 -1.3 Protein of unknown function (DUF3561) compare
EX28DRAFT_3540 -1.3 -1.2 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
EX28DRAFT_2916 -1.3 -3.4 diaminopimelate decarboxylase compare
EX28DRAFT_2852 -1.3 -5.2 sulfite reductase (NADPH) hemoprotein, beta-component compare
EX28DRAFT_3212 -1.3 -2.6 Lipoprotein NlpI, contains TPR repeats compare
EX28DRAFT_3893 -1.3 -2.2 ribonuclease PH compare
EX28DRAFT_1882 -1.3 -3.6 Periplasmic glucans biosynthesis protein compare
EX28DRAFT_0305 -1.3 -5.0 Isopentenyldiphosphate isomerase compare
EX28DRAFT_2050 -1.3 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) compare
EX28DRAFT_3244 -1.3 -1.0 Predicted transcriptional regulator, BolA superfamily compare
EX28DRAFT_2269 -1.3 -3.7 succinate dehydrogenase, hydrophobic membrane anchor protein compare
EX28DRAFT_4341 -1.3 -1.7 Protein-disulfide isomerase compare
EX28DRAFT_0118 -1.3 -2.3 SseB protein C-terminal domain/SseB protein N-terminal domain compare
EX28DRAFT_4544 -1.3 -1.1 phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
EX28DRAFT_0528 -1.3 -1.1 Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase compare
EX28DRAFT_4181 -1.2 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerases 2 compare
EX28DRAFT_4479 -1.2 -0.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0395 -1.2 -2.0 1-phosphofructokinase compare
EX28DRAFT_2267 -1.2 -3.1 succinate dehydrogenase and fumarate reductase iron-sulfur protein compare
EX28DRAFT_3377 -1.2 -1.9 rRNA methylase, putative, group 3 compare
EX28DRAFT_2348 -1.2 -0.5 Universal stress protein UspA and related nucleotide-binding proteins compare
EX28DRAFT_4153 -1.2 -0.9 3-dehydroquinate synthase (EC 4.2.3.4) compare
EX28DRAFT_2046 -1.2 -1.4 thiol reductant ABC exporter, CydC subunit compare
EX28DRAFT_1834 -1.2 -2.1 beta-ketoacyl-acyl-carrier-protein synthase II compare
EX28DRAFT_3253 -1.2 -1.9 Uncharacterized protein conserved in bacteria compare
EX28DRAFT_0074 -1.2 -5.2 sigma E regulatory protein, MucB/RseB compare
EX28DRAFT_2434 -1.2 -2.2 Protein of unknown function (DUF1471) compare
EX28DRAFT_2543 -1.2 -2.2 protoheme IX farnesyltransferase compare
EX28DRAFT_2364 -1.2 -2.4 Glycerol dehydrogenase and related enzymes compare
EX28DRAFT_2907 -1.2 -1.4 Bacterial protein of unknown function (DUF903) compare
EX28DRAFT_4456 -1.2 -4.7 UDP-N-acetylglucosamine 2-epimerase compare
EX28DRAFT_0081 -1.2 -2.3 DNA replication and repair protein RecO compare
EX28DRAFT_2724 -1.2 -0.9 RNA compare
EX28DRAFT_3275 -1.2 -6.8 Glutamate synthase domain 2 compare
EX28DRAFT_3408 -1.2 -1.5 Uncharacterized conserved protein compare
EX28DRAFT_3879 -1.1 -2.6 Glycosyltransferase compare
EX28DRAFT_0313 -1.1 -2.6 acetate kinase compare
EX28DRAFT_3548 -1.1 -2.3 homoprotocatechuate degradation operon regulator, HpaR compare
EX28DRAFT_0166 -1.1 -4.5 polyphosphate kinase 1 compare
EX28DRAFT_0687 -1.1 -1.9 tRNA (cmo5U34)-methyltransferase compare
EX28DRAFT_1679 -1.1 -2.6 pyruvate kinase compare
EX28DRAFT_3232 -1.1 -2.2 transcription elongation factor GreA compare
EX28DRAFT_1691 -1.1 -1.7 hypothetical protein compare
EX28DRAFT_4505 -1.1 -2.3 transcription elongation factor/antiterminator RfaH compare
EX28DRAFT_3671 -1.1 -2.8 RNA compare
EX28DRAFT_4327 -1.1 -1.2 transcriptional regulator, IclR family compare
EX28DRAFT_3899 -1.1 -2.4 (p)ppGpp synthetase, RelA/SpoT family compare
EX28DRAFT_3310 -1.1 -4.6 sodium/pantothenate symporter compare
EX28DRAFT_0411 -1.1 -3.2 Uncharacterized membrane protein compare


Specific Phenotypes

For 1 genes in this experiment

For in planta Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days in Enterobacter asburiae PDN3

For in planta Plant=poplar; PlantTreatment=None; Sample=roots; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days across organisms