Experiment set1IT001 for Pseudomonas simiae WCS417

Compare to:

LB with Nickel (II) chloride hexahydrate 1 mM

200 most important genes:

  gene name fitness t score description  
PS417_01605 -3.8 -3.4 phosphoglycerate mutase compare
PS417_08125 -3.0 -2.0 prephenate dehydratase compare
PS417_22520 -2.9 -4.7 histidine kinase compare
PS417_23770 -2.9 -4.7 exodeoxyribonuclease V subunit alpha compare
PS417_02690 -2.2 -5.6 N-acylglucosamine 2-epimerase conserved
PS417_00650 -2.1 -1.6 LysR family transcriptional regulator compare
PS417_19350 -2.1 -5.9 GTP cyclohydrolase compare
PS417_24155 -1.9 -3.5 ATP-binding protein compare
PS417_28070 -1.8 -6.7 phosphate ABC transporter ATP-binding protein compare
PS417_08135 -1.8 -6.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_06375 -1.8 -1.8 deoxycytidine triphosphate deaminase compare
PS417_19720 -1.7 -1.9 DNA-binding protein compare
PS417_00045 -1.7 -3.4 glycerol acyltransferase compare
PS417_16715 -1.5 -2.4 DoxX family protein compare
PS417_28080 -1.4 -9.6 phosphate ABC transporter permease compare
PS417_12730 -1.3 -2.8 glycosyltransferase compare
PS417_20985 -1.3 -2.4 porin compare
PS417_28085 -1.3 -7.9 phosphate-binding protein compare
PS417_22565 -1.3 -2.0 formyltetrahydrofolate deformylase compare
PS417_12310 -1.2 -8.1 methionine synthase compare
PS417_21625 -1.2 -1.7 DNA-binding protein compare
PS417_03525 -1.2 -2.0 hypothetical protein compare
PS417_24835 -1.2 -4.1 hypothetical protein compare
PS417_01920 -1.2 -2.6 ATP-dependent protease subunit HslV compare
PS417_21430 -1.1 -3.4 3-oxoacyl-ACP synthase compare
PS417_02975 -1.1 -5.2 3-dehydroquinate dehydratase compare
PS417_05570 -1.1 -4.4 DeoR faimly transcriptional regulator compare
PS417_23775 -1.1 -1.6 exodeoxyribonuclease V subunit beta compare
PS417_00345 -1.0 -3.0 copper-binding protein compare
PS417_24370 -1.0 -1.1 (2Fe-2S)-binding protein compare
PS417_21425 -1.0 -1.3 4-amino-4-deoxychorismate lyase compare
PS417_05160 -1.0 -1.4 DNA polymerase III subunit chi compare
PS417_02720 -1.0 -1.1 TetR family transcriptional regulator compare
PS417_28075 -1.0 -3.4 phosphate ABC transporter permease compare
PS417_13820 -0.9 -4.7 UDP-glucose 6-dehydrogenase compare
PS417_23900 -0.9 -5.1 poly(A) polymerase compare
PS417_15400 -0.9 -1.9 hypothetical protein compare
PS417_13790 -0.9 -3.5 UDP phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
PS417_08130 -0.9 -1.9 aspartate aminotransferase compare
PS417_09200 -0.9 -3.7 ABC transporter compare
PS417_09205 -0.9 -5.2 membrane protein compare
PS417_12670 -0.9 -2.5 hypothetical protein compare
PS417_26260 -0.9 -1.7 hypothetical protein compare
PS417_16055 -0.9 -2.2 biopolymer transporter TolR compare
PS417_02510 -0.9 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_24935 -0.8 -0.7 hypothetical protein compare
PS417_04585 -0.8 -1.2 hypothetical protein compare
PS417_27465 -0.8 -5.9 cystathionine gamma-synthase compare
PS417_13145 -0.8 -1.9 50S ribosomal protein L21 compare
PS417_01855 -0.8 -2.0 phosphoribosyl-AMP cyclohydrolase compare
PS417_24630 -0.8 -1.6 ATP-binding protein compare
PS417_04420 -0.8 -4.8 histidinol dehydrogenase compare
PS417_10675 -0.8 -1.0 TetR family transcriptional regulator compare
PS417_06680 -0.8 -5.2 nuclease PIN compare
PS417_02555 -0.8 -6.3 exoribonuclease R compare
PS417_07615 -0.8 -3.8 TetR family transcriptional regulator compare
PS417_06100 -0.7 -1.6 SAM-dependent methyltransferase compare
PS417_10480 -0.7 -1.8 glutathione S-transferase compare
PS417_08155 -0.7 -1.5 integration host factor subunit beta compare
PS417_05500 -0.7 -2.9 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_22300 -0.7 -1.4 LTXXQ domain protein compare
PS417_05100 -0.7 -1.7 RNA polymerase sigma factor compare
PS417_25175 -0.7 -1.9 hypothetical protein compare
PS417_27040 -0.7 -2.9 3-phosphoglycerate dehydrogenase compare
PS417_13010 -0.7 -1.5 alpha/beta hydrolase compare
PS417_04270 -0.7 -4.2 ribonuclease G compare
PS417_18105 -0.7 -1.1 iron-dicitrate transporter substrate-binding subunit compare
PS417_18445 -0.7 -2.0 glycerol-3-phosphatase compare
PS417_06350 -0.7 -4.6 stationary phase survival protein SurE compare
PS417_27315 -0.7 -1.2 hypothetical protein compare
PS417_20665 -0.7 -2.8 hypothetical protein compare
PS417_00080 -0.7 -4.3 potassium transporter peripheral membrane component compare
PS417_11965 -0.7 -1.0 GCN5 family acetyltransferase compare
PS417_02415 -0.7 -3.6 phosphoserine phosphatase compare
PS417_09325 -0.7 -3.5 peptidase S41 compare
PS417_04375 -0.7 -1.9 ABC transporter ATP-binding protein compare
PS417_08090 -0.7 -1.2 3-oxoacyl-ACP reductase compare
PS417_01290 -0.7 -1.5 ADP-ribose diphosphatase compare
PS417_21065 -0.7 -2.1 3-methylitaconate isomerase compare
PS417_10040 -0.6 -0.8 MFS transporter compare
PS417_00190 -0.6 -2.5 LysR family transcriptional regulator compare
PS417_26995 -0.6 -3.9 phosphoserine phosphatase compare
PS417_12820 -0.6 -2.0 hypothetical protein compare
PS417_10810 -0.6 -1.4 hypothetical protein compare
PS417_22620 -0.6 -1.8 pyruvate kinase compare
PS417_16195 -0.6 -0.8 AraC family transcriptional regulator compare
PS417_21955 -0.6 -2.5 dehydrogenase compare
PS417_27155 -0.6 -1.1 aliphatic sulfonates transport ATP-binding subunit compare
PS417_08620 -0.6 -0.9 hypothetical protein compare
PS417_21515 -0.6 -4.6 transcriptional regulator compare
PS417_23360 -0.6 -0.9 hypothetical protein compare
PS417_12585 -0.6 -3.9 acriflavine resistance protein B compare
PS417_13800 -0.6 -2.1 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_22210 -0.6 -1.3 AraC family transcriptional regulator compare
PS417_08380 -0.6 -2.8 ABC transporter ATP-binding protein compare
PS417_20030 -0.6 -1.3 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_23995 -0.6 -0.7 preprotein translocase subunit SecG compare
PS417_13490 -0.6 -0.9 hypothetical protein compare
PS417_27765 -0.6 -2.7 peptide ABC transporter substrate-binding protein compare
PS417_19225 -0.6 -2.5 FAD-dependent cmnm(5)s(2)U34 oxidoreductase compare
PS417_13240 -0.6 -2.3 siderophore biosynthesis protein compare
PS417_27595 -0.6 -1.7 recombinase XerC compare
PS417_16825 -0.6 -2.2 membrane protein compare
PS417_24785 -0.6 -1.1 nucleoside-diphosphate sugar epimerase compare
PS417_05965 -0.6 -0.9 chemotaxis protein CheW compare
PS417_06600 -0.6 -0.8 leucine/isoleucine/valine transporter ATP-binding subunit compare
PS417_14825 -0.6 -1.5 hypothetical protein compare
PS417_08730 -0.6 -1.5 cytochrome C compare
PS417_23250 -0.6 -3.3 S-adenosylmethionine tRNA ribosyltransferase compare
PS417_01620 -0.6 -2.3 preprotein translocase subunit SecB compare
PS417_10995 -0.6 -1.8 GntR family transcriptional regulator compare
PS417_22205 -0.6 -4.2 potassium transporter TrkH compare
PS417_00195 -0.6 -1.2 hypothetical protein compare
PS417_07695 -0.6 -2.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PS417_01995 -0.6 -1.3 hypothetical protein compare
PS417_13165 -0.6 -1.2 peroxidase compare
PS417_19620 -0.6 -1.5 hypothetical protein compare
PS417_22445 -0.6 -1.9 ATP-dependent DNA helicase RuvB compare
PS417_16510 -0.6 -1.6 Clp protease ClpX compare
PS417_04390 -0.6 -2.9 toluene tolerance protein compare
PS417_04415 -0.5 -4.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_19065 -0.5 -0.7 monooxygenase compare
PS417_18140 -0.5 -1.6 hypothetical protein compare
PS417_20915 -0.5 -1.3 hypothetical protein compare
PS417_24125 -0.5 -1.8 hypothetical protein compare
PS417_09210 -0.5 -1.1 TetR family transcriptional regulator compare
PS417_14950 -0.5 -1.8 structural protein MipA compare
PS417_22570 -0.5 -0.6 H-NS histone compare
PS417_10220 -0.5 -1.7 hypothetical protein compare
PS417_05095 -0.5 -1.9 membrane protein compare
PS417_13805 -0.5 -3.7 4-amino-4-deoxy-L-arabinose transferase compare
PS417_09605 -0.5 -1.4 glycosyl transferase compare
PS417_25860 -0.5 -1.7 glycerol-3-phosphate acyltransferase compare
PS417_21355 -0.5 -1.1 hypothetical protein compare
PS417_18450 -0.5 -2.1 hydrolase compare
PS417_03300 -0.5 -1.8 alanine acetyltransferase compare
PS417_26755 -0.5 -0.7 nucleoside-triphosphate diphosphatase compare
PS417_04800 -0.5 -1.2 alginate O-acetyltransferase compare
PS417_02880 -0.5 -1.7 copper chaperone compare
PS417_13795 -0.5 -2.5 UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
PS417_13510 -0.5 -0.8 polyketide cyclase compare
PS417_06770 -0.5 -2.9 multidrug transporter compare
PS417_25975 -0.5 -3.0 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) compare
PS417_16555 -0.5 -0.7 cupin compare
PS417_24320 -0.5 -2.7 large-conductance mechanosensitive channel compare
PS417_02385 -0.5 -1.1 esterase compare
PS417_12090 -0.5 -1.3 hypothetical protein compare
PS417_19520 -0.5 -1.4 transcriptional regulator compare
PS417_02210 -0.5 -2.8 diguanylate cyclase compare
PS417_21090 -0.5 -1.8 hypothetical protein compare
PS417_06205 -0.5 -3.2 methionine aminopeptidase compare
PS417_06125 -0.5 -1.6 hypothetical protein compare
PS417_23330 -0.5 -1.4 hypothetical protein compare
PS417_06830 -0.5 -0.9 hypothetical protein compare
PS417_15075 -0.5 -3.5 NAD-glutamate dehydrogenase compare
PS417_04385 -0.5 -2.4 organic solvent ABC transporter substrate-binding protein compare
PS417_20705 -0.5 -2.8 cbb3-type cytochrome c oxidase subunit II compare
PS417_27435 -0.5 -2.4 polyphosphate kinase compare
PS417_27870 -0.5 -1.7 ATP-dependent DNA helicase RecG compare
PS417_05695 -0.5 -1.9 transcriptional regulator compare
PS417_00845 -0.5 -1.1 transcriptional regulator compare
PS417_10320 -0.5 -1.7 hypothetical protein compare
PS417_01380 -0.5 -2.1 nucleotide cyclase compare
PS417_19705 -0.5 -1.3 flagellar biosynthesis regulator FlhF compare
PS417_00180 -0.5 -1.2 tryptophan synthase subunit alpha compare
PS417_06165 -0.5 -2.1 thiamine biosynthesis protein ThiF compare
PS417_21360 -0.5 -0.7 termination factor Rho compare
PS417_10275 -0.5 -0.8 histidine kinase compare
PS417_19305 -0.5 -2.2 acireductone dioxygenase compare
PS417_17240 -0.5 -1.8 trigger factor compare
PS417_09615 -0.5 -1.7 glycosyl transferase family 1 compare
PS417_19675 -0.4 -2.6 chemotaxis protein CheY compare
PS417_06895 -0.4 -1.4 DNA-binding protein compare
PS417_08465 -0.4 -2.1 elongation factor GreAB compare
PS417_11400 -0.4 -0.9 phosphoglycerate mutase compare
PS417_00375 -0.4 -2.1 membrane protein compare
PS417_08430 -0.4 -2.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_03550 -0.4 -1.0 hypothetical protein compare
PS417_05840 -0.4 -1.3 LuxR family transcriptional regulator compare
PS417_13055 -0.4 -1.3 aminotransferase compare
PS417_02255 -0.4 -1.0 lipopolysaccharide kinase compare
PS417_05905 -0.4 -1.0 hypothetical protein compare
PS417_11485 -0.4 -1.0 AraC family transcriptional regulator compare
PS417_23035 -0.4 -2.8 D-trehalose PTS system, I, HPr, and IIA components (from data) compare
PS417_14850 -0.4 -1.6 hypothetical protein compare
PS417_00465 -0.4 -1.4 hypothetical protein compare
PS417_04380 -0.4 -0.8 ABC transporter permease compare
PS417_27785 -0.4 -2.2 phosphoglucomutase compare
PS417_23045 -0.4 -1.5 Alpha,alpha-phosphotrehalase (EC 3.2.1.93) (from data) compare
PS417_11720 -0.4 -1.4 class V aminotransferase compare
PS417_27750 -0.4 -2.8 transcriptional regulator compare
PS417_09740 -0.4 -1.0 RNA polymerase subunit sigma-24 compare
PS417_17455 -0.4 -2.1 cytochrome C compare
PS417_06445 -0.4 -1.1 iron-siderophore ABC transporter permease compare
PS417_06825 -0.4 -1.3 hypothetical protein compare
PS417_20700 -0.4 -3.2 cbb3-type cytochrome c oxidase subunit I compare
PS417_22825 -0.4 -2.2 hypothetical protein compare
PS417_01560 -0.4 -1.3 imidazoleglycerol-phosphate dehydratase compare
PS417_25825 -0.4 -1.0 sulfurtransferase compare
PS417_06175 -0.4 -1.8 cysteine sulfinate desulfinase compare


Specific Phenotypes

For 1 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Pseudomonas simiae WCS417

For stress Nickel (II) chloride hexahydrate across organisms