Experiment set1H47 for Kangiella aquimarina DSM 16071

Compare to:

marine broth with methylglyoxal 0.005 vol%

Group: stress
Media: marine_broth_2216 + methylglyoxal (0.005 vol%) + Dimethyl Sulfoxide
Culturing: Kang_ML4, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Jake on 9/24/2013
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 699 C1,C2

Specific Phenotypes

For 16 genes in this experiment

For stress methylglyoxal in Kangiella aquimarina DSM 16071

For stress methylglyoxal across organisms

SEED Subsystems

Subsystem #Specific
DNA-replication 2
DNA repair, bacterial 2
Glutathione: Non-redox reactions 2
Methylglyoxal Metabolism 2
Beta-lactamase 1
Cysteine Biosynthesis 1
DNA repair, UvrABC system 1
DNA repair, bacterial DinG and relatives 1
Glutathione-dependent pathway of formaldehyde detoxification 1
Glycerol and Glycerol-3-phosphate Uptake and Utilization 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
methylglyoxal degradation I 3 2 2
methylglyoxal degradation VIII 3 2 2
formaldehyde oxidation II (glutathione-dependent) 3 3 1
superpathway of methylglyoxal degradation 8 3 2
superpathway of C1 compounds oxidation to CO2 12 3 1