Experiment set1H16 for Kangiella aquimarina DSM 16071

marine broth with Sodium Chlorite 2.5 mM

Group: stress
Media: marine_broth_2216 + Sodium Chlorite (2.5 mM)
Culturing: Kang_ML4, 48 well microplate; Tecan Infinite F200, Aerobic, at 30 (C), shaken=orbital
By: Jake on 9/17/2013
Media components: 5 g/L Bacto Peptone, 1 g/L Yeast Extract, 0.1 g/L Ferric citrate, 19.45 g/L Sodium Chloride, 5.9 g/L Magnesium chloride hexahydrate, 3.24 g/L Magnesium sulfate, 1.8 g/L Calcium chloride, 0.55 g/L Potassium Chloride, 0.16 g/L Sodium bicarbonate, 0.08 g/L Potassium bromide, 34 mg/L Strontium chloride, 22 mg/L Boric Acid, 4 mg/L Sodium metasilicate, 2.4 mg/L sodium fluoride, 8 mg/L Disodium phosphate
Growth plate: 692 D3,D4

Specific Phenotypes

For 17 genes in this experiment

For stress Sodium Chlorite in Kangiella aquimarina DSM 16071

For stress Sodium Chlorite across organisms

SEED Subsystems

Subsystem	#Specific
Queuosine-Archaeosine Biosynthesis	4
Thioredoxin-disulfide reductase	2
DNA-binding regulatory proteins, strays	1
Glutathione: Redox cycle	1
Oxidative stress	1
Stringent Response, (p)ppGpp metabolism	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

• Purine metabolism
• Glutathione metabolism
• Carotenoid biosynthesis - General
• Pentose and glucuronate interconversions
• Biosynthesis of steroids
• Ubiquinone and menaquinone biosynthesis
• Histidine metabolism
• Tyrosine metabolism
• Tryptophan metabolism
• Benzoxazinone biosynthesis
• Lipopolysaccharide biosynthesis
• Naphthalene and anthracene degradation
• Porphyrin and chlorophyll metabolism
• Phenylpropanoid biosynthesis
• Flavonoid biosynthesis
• Anthocyanin biosynthesis
• Alkaloid biosynthesis I
• Insect hormone biosynthesis
• Biosynthesis of alkaloids derived from shikimate pathway
• Biosynthesis of alkaloids derived from histidine and purine
• Biosynthesis of plant hormones

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
queuosine biosynthesis I (de novo)	4	4	3
ppGpp metabolism	6	6	4
queuosine biosynthesis III (queuosine salvage)	5	3	2
5-(methoxycarbonylmethoxy)uridine biosynthesis	3	2	1
glutathione-peroxide redox reactions	3	2	1