Experiment set19S399 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu4166 -5.7 -2.0 UDP-glucose 4-epimerase compare
Atu3353 -5.7 -10.2 mannose-1-phosphate guanylyltransferase compare
Atu2522 -4.6 -13.2 agrobacterium chromosomal virulence protein B compare
Atu4615 -4.5 -8.5 glucose-1-phosphate thymidylyltransferase compare
Atu2379 -4.5 -9.9 phosphomannomutase compare
Atu0978 -4.4 -3.1 two component response regulator compare
Atu4617 -4.3 -5.6 dTDP-D-glucose-4,6-dehydratase compare
Atu4618 -4.3 -8.3 dTDP-rhamnose-3,5-epimerase compare
Atu1646 -4.0 -3.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu4613 -4.0 -10.1 glycosyltransferase compare
Atu3311 -3.9 -10.1 phosphomannose isomerase compare
Atu4616 -3.8 -1.6 dTDP-4-dehydrorhamnose reductase compare
Atu1645 -3.8 -5.2 ABC transporter, substrate binding protein compare
Atu0030 -3.6 -1.6 phosphocarrier protein HPr compare
Atu1030 -3.6 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2183 -3.6 -4.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1028 -3.6 -1.3 hypothetical protein compare
Atu4614 -3.6 -6.3 glycosyltransferase compare
Atu3392 -3.4 -3.5 methyltransferase compare
Atu0040 -3.3 -1.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0041 -3.2 -1.9 glutamine amidotransferase compare
Atu0050 -3.2 -2.2 two component response regulator compare
Atu0319 -3.1 -1.3 ubiquinone biosynthesis protein compare
Atu2073 -3.0 -3.4 membrane protein compare
Atu3707 -3.0 -1.7 phosphoserine aminotransferase compare
Atu0038 -3.0 -3.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0331 -2.9 -2.5 sigma-54 modulation protein compare
Atu1446 -2.9 -2.0 two component response regulator compare
Atu0692 -2.8 -8.6 glutathione-regulated potassium-efflux system protein compare
Atu1644 -2.8 -2.6 hypothetical protein compare
Atu1354 -2.8 -1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu4317 -2.8 -2.3 TetR family transcriptional regulator compare
Atu3727 -2.7 -4.0 hypothetical protein compare
Atu0876 -2.7 -1.7 superoxide dismutase compare
Atu0679 -2.6 -7.1 ATP phosphoribosyltransferase compare
Atu2684 -2.6 -1.8 hypothetical protein compare
Atu0537 -2.5 -7.8 histidinol dehydrogenase compare
Atu1163 -2.5 -0.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0051 -2.5 -1.7 two component sensor kinase compare
Atu3732 -2.4 -8.8 hemolysin compare
Atu0601 -2.4 -10.6 oxidoreductase compare
Atu0043 -2.3 -2.7 imidazoleglycerol-phosphate dehydratase compare
Atu1468 -2.3 -10.1 hypothetical protein compare
Atu1327 -2.3 -1.1 NADH-ubiquinone oxidoreductase compare
Atu1750 -2.3 -4.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu1739 -2.3 -2.8 permease compare
Atu0678 -2.2 -7.3 histidyl-tRNA synthetase compare
Atu1588 -2.2 -6.0 homoserine dehydrogenase compare
Atu2521 -2.2 -11.6 Protein regulated by acid pH compare
Atu3908 -2.1 -7.6 GntR family transcriptional regulator compare
Atu3706 -2.1 -7.8 D-3-phosphoglycerate dehydrogenase compare
Atu2831 -2.1 -3.2 glucose inhibited division protein A compare
Atu2057 -2.0 -1.3 DNA helicase II compare
Atu1364 -2.0 -4.3 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0142 -2.0 -0.9 cytochrome o ubiquinol oxidase subunit II compare
Atu0977 -2.0 -2.9 serine protease DO-like protease compare
Atu3744 -2.0 -8.2 ABC transporter permease compare
Atu0029 -2.0 -5.4 S-adenosylhomocysteine hydrolase compare
Atu1566 -2.0 -1.0 hypothetical protein compare
Atu1019 -1.9 -2.6 hypothetical protein compare
Atu0979 -1.9 -5.7 two component sensor kinase compare
Atu3120 -1.9 -1.0 hypothetical protein compare
Atu4608 -1.9 -6.3 hypothetical protein compare
Atu4711 -1.9 -5.5 two component sensor kinase compare
Atu3544 -1.9 -8.0 arsenical pump membrane protein compare
Atu1513 -1.9 -4.0 ABC excinuclease subunit A compare
Atu8095 -1.9 -3.0 hypothetical protein compare
Atu0141 -1.8 -0.8 cytochrome O ubiquinol oxidase subunit I compare
Atu3017 -1.8 -1.1 phosphoglyceromutase compare
Atu1242 -1.8 -3.2 cytochrome oxidase assembly factor compare
Atu0189 -1.8 -0.8 ABC transporter, membrane spanning protein (peptide) compare
Atu2113 -1.8 -3.3 N-acetylmuramoyl-L-alanine amidase compare
Atu3613 -1.8 -4.5 hypothetical protein compare
Atu0769 -1.8 -0.9 protoheme IX farnesyltransferase compare
Atu2289 -1.7 -9.0 anthranilate synthase component I and II compare
Atu4882 -1.7 -2.1 hypothetical protein compare
Atu0143 -1.7 -8.1 MFS permease compare
Atu5125 -1.7 -3.7 GntR family transcriptional regulator compare
Atu2040 -1.7 -2.5 phosphoserine phosphatase compare
Atu1439 -1.7 -1.1 hypothetical protein compare
Atu1810 -1.7 -0.6 hypothetical protein compare
Atu5164 -1.7 -0.9 type IV secretion protein AvhB3 compare
Atu0486 -1.7 -3.1 dihydroorotate dehydrogenase compare
Atu0999 -1.7 -1.1 magnesium transport protein compare
Atu4610 -1.7 -3.0 sugar nucleotide epimerase/dehydratase compare
Atu0039 -1.6 -1.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu8138 -1.6 -1.1 hypothetical protein compare
Atu4514 -1.6 -4.0 RpiR family transcriptional regulator compare
Atu1417 -1.6 -4.0 enoyl-CoA hydratase compare
Atu0972 -1.6 -2.2 lipA protein compare
Atu0101 -1.6 -2.7 cytochrome c compare
Atu0368 -1.6 -3.7 tRNA pseudouridine synthase I compare
Atu3598 -1.6 -0.9 thiol:disulfide interchange protein compare
Atu3730 -1.5 -0.9 hypothetical protein compare
Atu1647 -1.5 -3.9 ABC transporter, membrane spanning protein compare
Atu2832 -1.5 -2.8 tRNA modification GTPase compare
Atu0036 -1.5 -1.0 hypothetical protein compare
Atu1683 -1.5 -1.3 hypothetical protein compare
Atu2335 -1.5 -1.3 hypothetical protein compare
Atu1503 -1.5 -0.9 hypothetical protein compare
Atu0767 -1.5 -4.3 cytochrome c oxidase subunit II compare
Atu2067 -1.5 -0.7 hypothetical protein compare
Atu2083 -1.4 -2.5 DNA repair protein RecN compare
Atu5430 -1.4 -1.1 hypothetical protein compare
Atu8168 -1.4 -1.6 hypothetical protein compare
Atu1103 -1.4 -1.3 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2274 -1.4 -6.3 cation efflux system protein compare
Atu1204 -1.4 -3.5 potassium uptake protein compare
Atu0434 -1.4 -1.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0768 -1.4 -5.8 cytochrome-c oxidase chain I compare
Atu4743 -1.4 -4.6 LacI family transcriptional regulator compare
Atu1359 -1.3 -0.8 dnaK deletion suppressor protein compare
Atu4609 -1.3 -3.8 glycosyltransferase compare
Atu4779 -1.3 -1.7 hypothetical protein compare
Atu0062 -1.3 -5.6 transcriptional regulator, ROK family compare
Atu1705 -1.3 -2.6 SEC-independent protein translocase protein compare
Atu0026 -1.3 -0.6 hypothetical protein compare
Atu0138 -1.3 -5.0 surfeit 1 compare
Atu3012 -1.3 -1.4 hypothetical protein compare
Atu2464 -1.3 -2.0 formyltetrahydrofolate deformylase compare
Atu1131 -1.3 -3.8 outer membrane protein compare
Atu3739 -1.3 -1.7 phosphoglycerate kinase compare
Atu1688 -1.3 -3.5 indole-3-glycerol-phosphate synthase compare
Atu5107 -1.3 -2.6 hypothetical protein compare
Atu0471 -1.3 -2.0 hypothetical protein compare
Atu2722 -1.3 -4.6 porin compare
Atu3780 -1.3 -3.0 hypothetical protein compare
Atu4092 -1.3 -6.1 cytochrome d oxidase subunit II compare
Atu0340 -1.2 -1.4 SAM dependent methyltransferase compare
Atu2620 -1.2 -1.0 hypothetical protein compare
Atu1902 -1.2 -5.1 transketolase compare
Atu2036 -1.2 -6.7 acetolactate synthase III, large subunit compare
Atu2798 -1.2 -3.0 precorrin-6y methyltransferase compare
Atu2207 -1.2 -2.3 two component sensor kinase compare
Atu0272 -1.2 -3.7 transcriptional regulator, MarR family compare
Atu4446 -1.2 -6.5 hypothetical protein compare
Atu4148 -1.2 -3.7 UDP-glucuronic acid epimerase compare
Atu2439 -1.2 -0.4 hypothetical protein compare
Atu3609 -1.2 -3.0 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu1031 -1.2 -1.7 hypothetical protein compare
Atu2791 -1.2 -3.6 3-isopropylmalate dehydrogenase compare
Atu2615 -1.1 -1.1 hypothetical protein compare
Atu1694 -1.1 -1.4 hypothetical protein compare
Atu0298 -1.1 -3.5 orotidine 5 compare
Atu0824 -1.1 -0.8 hypothetical protein compare
Atu0479 -1.1 -3.8 ABC transporter, substrate binding protein (amino acid) compare
Atu3466 -1.1 -1.6 ArsR family transcriptional regulator compare
Atu0895 -1.1 -1.3 ABC transporter, substrate binding protein compare
Atu1904 -1.1 -1.9 transcriptional regulator compare
Atu1466 -1.1 -0.9 hypothetical protein compare
Atu1258 -1.1 -1.6 ATP-dependent Clp protease, proteolytic subunit compare
Atu2555 -1.1 -2.6 L-lysine 2,3-aminomutase compare
Atu4205 -1.1 -3.9 TetR family transcriptional regulator compare
Atu4897 -1.1 -1.1 hypothetical protein compare
Atu0361 -1.1 -1.1 transcriptional regulator compare
Atu3122 -1.1 -2.3 cold shock protein compare
Atu8036 -1.1 -2.2 protein YBGT-like protein compare
Atu2367 -1.1 -1.8 hypothetical protein compare
Atu2616 -1.1 -1.0 hypothetical protein compare
Atu0296 -1.1 -3.4 NADH-ubiquinone oxidoreductase compare
Atu1129 -1.1 -3.7 excinuclease ABC chain C compare
Atu0031 -1.1 -0.5 PTS system, IIA component compare
Atu1678 -1.1 -2.1 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu4323 -1.0 -2.9 ribitol 2-dehydrogenase compare
Atu2286 -1.0 -1.0 hypothetical protein compare
Atu1889 -1.0 -1.4 diacylglycerol kinase compare
Atu6159 -1.0 -3.0 hypothetical protein compare
Atu1189 -1.0 -2.0 hypothetical protein compare
Atu0153 -1.0 -3.3 transcriptional regulator, Fur family compare
Atu1175 -1.0 -0.8 hypothetical protein compare
Atu1307 -1.0 -3.1 dihydroorotase compare
Atu4117 -1.0 -3.9 dipeptide ABC transporter ATPase compare
Atu2052 -1.0 -2.1 hypothetical protein compare
Atu0099 -1.0 -4.0 prephenate dehydratase compare
Atu1308 -1.0 -2.8 aspartate carbamoyl transferase catalytic subunit compare
Atu8029 -1.0 -0.9 hypothetical protein compare
Atu0017 -1.0 -1.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1634 -1.0 -0.6 hypothetical protein compare
Atu0149 -1.0 -1.3 enoyl-(acyl-carrier-protein) reductase compare
Atu0640 -1.0 -1.8 hypothetical protein compare
Atu4362 -1.0 -2.9 hypothetical protein compare
Atu1467 -1.0 -2.0 hypothetical protein compare
Atu0795 -1.0 -1.2 hypothetical protein compare
Atu2017 -1.0 -0.7 hypothetical protein compare
Atu0690 -0.9 -1.1 hypothetical protein compare
Atu2249 -0.9 -0.7 hypothetical protein compare
Atu1205 -0.9 -5.4 threonine dehydratase compare
Atu2163 -0.9 -0.8 hypothetical protein compare
Atu1039 -0.9 -1.7 DNA repair protein RecO compare
Atu4452 -0.9 -1.7 hypothetical protein compare
Atu3334 -0.9 -2.0 hypothetical protein compare
Atu2585 -0.9 -3.2 hypothetical protein compare
Atu1687 -0.9 -4.6 anthranilate phosphoribosyltransferase compare
Atu4760 -0.9 -4.7 GntR family transcriptional regulator compare
Atu2267 -0.9 -3.9 hypothetical protein compare
Atu8035 -0.9 -1.0 hypothetical protein compare
Atu2075 -0.9 -3.4 chemotaxis protein compare
Atu2381 -0.9 -2.1 hypothetical protein compare
Atu8118 -0.9 -2.5 putative universal stress protein compare
Atu8162 -0.9 -0.7 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct across organisms