Experiment set19S399 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

Group: in planta
Media: + Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Culturing: Agro_ML11b
By: Mitchell Thompson on 6/16/23

Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct across organisms

SEED Subsystems

Subsystem #Specific
Bacterial RNA-metabolizing Zn-dependent hydrolases 1
Conserved gene cluster associated with Met-tRNA formyltransferase 1
Terminal cytochrome d ubiquinol oxidases 1
Terminal cytochrome oxidases 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
NADH to cytochrome bd oxidase electron transfer I 2 2 1
succinate to cytochrome bd oxidase electron transfer 2 2 1
pyruvate to cytochrome bd oxidase electron transfer 2 1 1
NADH to cytochrome bd oxidase electron transfer II 2 1 1