Experiment set19S396 for Agrobacterium fabrum C58

Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

Group: in planta
Media: + Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct
Culturing: Agro_ML11b
By: Mitchell Thompson on 6/16/23

Specific Phenotypes

For 6 genes in this experiment

For in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Sorghum_Btx_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct across organisms

SEED Subsystems

Subsystem	#Specific
Bacterial RNA-metabolizing Zn-dependent hydrolases	1
Biogenesis of cytochrome c oxidases	1
Conserved gene cluster associated with Met-tRNA formyltransferase	1
Ribitol, Xylitol, Arabitol, Mannitol and Sorbitol utilization	1
Terminal cytochrome d ubiquinol oxidases	1
Terminal cytochrome oxidases	1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway	#Steps	#Present	#Specific
succinate to cytochrome bd oxidase electron transfer	2	2	1
NADH to cytochrome bd oxidase electron transfer I	2	2	1
NADH to cytochrome bd oxidase electron transfer II	2	1	1
pyruvate to cytochrome bd oxidase electron transfer	2	1	1