Experiment set19S393 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu3544 -7.1 -9.8 arsenical pump membrane protein compare
Atu4614 -5.8 -8.0 glycosyltransferase compare
Atu2183 -5.6 -11.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2522 -5.2 -14.1 agrobacterium chromosomal virulence protein B compare
Atu3311 -5.0 -13.4 phosphomannose isomerase compare
Atu4618 -5.0 -14.0 dTDP-rhamnose-3,5-epimerase compare
Atu4166 -4.9 -3.0 UDP-glucose 4-epimerase compare
Atu4615 -4.9 -12.0 glucose-1-phosphate thymidylyltransferase compare
Atu4613 -4.8 -16.0 glycosyltransferase compare
Atu3353 -4.8 -12.7 mannose-1-phosphate guanylyltransferase compare
Atu0041 -4.3 -2.6 glutamine amidotransferase compare
Atu0978 -4.2 -5.0 two component response regulator compare
Atu4616 -4.2 -2.1 dTDP-4-dehydrorhamnose reductase compare
Atu3706 -4.1 -9.4 D-3-phosphoglycerate dehydrogenase compare
Atu2040 -4.0 -6.1 phosphoserine phosphatase compare
Atu4317 -4.0 -3.3 TetR family transcriptional regulator compare
Atu0039 -4.0 -2.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu4617 -4.0 -9.9 dTDP-D-glucose-4,6-dehydratase compare
Atu1030 -3.9 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2379 -3.8 -8.7 phosphomannomutase compare
Atu0030 -3.7 -2.0 phosphocarrier protein HPr compare
Atu6098 -3.5 -1.5 transcriptional regulator, HTH family compare
Atu1359 -3.4 -1.5 dnaK deletion suppressor protein compare
Atu4610 -3.4 -9.3 sugar nucleotide epimerase/dehydratase compare
Atu2289 -3.4 -17.6 anthranilate synthase component I and II compare
Atu3908 -3.4 -11.4 GntR family transcriptional regulator compare
Atu1468 -3.2 -10.0 hypothetical protein compare
Atu1750 -3.1 -5.3 phosphoribosyl c-AMP cyclohydrolase compare
Atu2073 -3.1 -4.2 membrane protein compare
Atu0050 -3.1 -2.1 two component response regulator compare
Atu1417 -2.8 -8.1 enoyl-CoA hydratase compare
Atu0537 -2.8 -8.6 histidinol dehydrogenase compare
Atu2521 -2.8 -15.1 Protein regulated by acid pH compare
Atu1644 -2.7 -2.2 hypothetical protein compare
Atu0051 -2.6 -1.8 two component sensor kinase compare
Atu1470 -2.6 -1.5 Camphor resistance protein compare
Atu0678 -2.6 -6.1 histidyl-tRNA synthetase compare
Atu4711 -2.6 -7.4 two component sensor kinase compare
Atu4609 -2.6 -10.9 glycosyltransferase compare
Atu3727 -2.5 -4.9 hypothetical protein compare
Atu1874 -2.5 -2.4 RecA protein compare
Atu0043 -2.5 -2.8 imidazoleglycerol-phosphate dehydratase compare
Atu8167 -2.4 -8.0 putative transmembrane protein compare
Atu0876 -2.4 -1.7 superoxide dismutase compare
Atu0692 -2.4 -8.9 glutathione-regulated potassium-efflux system protein compare
Atu1588 -2.4 -7.3 homoserine dehydrogenase compare
Atu0038 -2.4 -4.4 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3469 -2.3 -2.5 phosphoglyceromutase compare
Atu0331 -2.3 -2.5 sigma-54 modulation protein compare
Atu4608 -2.3 -10.4 hypothetical protein compare
Atu3598 -2.3 -1.4 thiol:disulfide interchange protein compare
Atu0086 -2.3 -1.4 ribosome-binding factor A compare
Atu0679 -2.3 -5.3 ATP phosphoribosyltransferase compare
Atu2464 -2.2 -3.9 formyltetrahydrofolate deformylase compare
Atu8095 -2.2 -6.0 hypothetical protein compare
Atu2718 -2.2 -6.3 homoserine O-succinyltransferase compare
Atu4323 -2.2 -5.4 ribitol 2-dehydrogenase compare
Atu0784 -2.1 -2.6 hypothetical protein compare
Atu1327 -2.1 -2.3 NADH-ubiquinone oxidoreductase compare
Atu2832 -2.1 -3.7 tRNA modification GTPase compare
Atu0486 -2.1 -4.8 dihydroorotate dehydrogenase compare
Atu2083 -2.1 -2.9 DNA repair protein RecN compare
Atu0977 -2.1 -3.7 serine protease DO-like protease compare
Atu2036 -2.1 -10.6 acetolactate synthase III, large subunit compare
Atu0979 -2.1 -6.7 two component sensor kinase compare
Atu0141 -2.0 -1.0 cytochrome O ubiquinol oxidase subunit I compare
Atu0769 -2.0 -1.2 protoheme IX farnesyltransferase compare
Atu3732 -2.0 -9.5 hemolysin compare
Atu0533 -2.0 -2.3 putative inhibitor of septum formation compare
Atu0142 -2.0 -1.5 cytochrome o ubiquinol oxidase subunit II compare
Atu0153 -2.0 -4.4 transcriptional regulator, Fur family compare
Atu0999 -1.9 -1.3 magnesium transport protein compare
Atu0099 -1.9 -8.5 prephenate dehydratase compare
Atu1364 -1.9 -4.1 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1810 -1.8 -0.8 hypothetical protein compare
Atu2264 -1.8 -8.1 2-isopropylmalate synthase compare
Atu2554 -1.8 -2.9 lysyl-tRNA synthetase compare
Atu8025 -1.8 -1.8 hypothetical protein compare
Atu1838 -1.8 -3.1 ABC transporter, substrate binding protein (amino acid) compare
Atu2274 -1.8 -7.6 cation efflux system protein compare
Atu2684 -1.8 -2.4 hypothetical protein compare
Atu0895 -1.7 -1.6 ABC transporter, substrate binding protein compare
Atu0040 -1.7 -1.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2155 -1.7 -10.7 methionine synthase compare
Atu1705 -1.7 -4.4 SEC-independent protein translocase protein compare
Atu0269 -1.7 -3.3 exodeoxyribonuclease VII large subunit compare
Atu2052 -1.7 -2.8 hypothetical protein compare
Atu0368 -1.7 -2.8 tRNA pseudouridine synthase I compare
Atu1688 -1.7 -4.8 indole-3-glycerol-phosphate synthase compare
Atu0031 -1.6 -0.8 PTS system, IIA component compare
Atu3009 -1.6 -1.1 exopolysaccharide production protein compare
Atu2710 -1.6 -1.6 hypothetical protein compare
Atu3468 -1.6 -0.8 hypothetical protein compare
Atu0601 -1.6 -6.9 oxidoreductase compare
Atu0017 -1.6 -3.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1646 -1.6 -2.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu0399 -1.5 -4.6 dihydroorotase compare
Atu1647 -1.5 -4.5 ABC transporter, membrane spanning protein compare
Atu2555 -1.5 -3.0 L-lysine 2,3-aminomutase compare
Atu1077 -1.5 -2.6 DNA repair protein compare
Atu0421 -1.5 -1.7 ABC transporter, membrane spanning protein compare
Atu5430 -1.5 -1.5 hypothetical protein compare
Atu0432 -1.5 -5.8 O-succinylhomoserine sulfhydrylase compare
Atu3739 -1.5 -3.1 phosphoglycerate kinase compare
Atu0422 -1.5 -2.1 ABC transporter, membrane spanning protein compare
Atu1354 -1.5 -1.0 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0029 -1.5 -3.8 S-adenosylhomocysteine hydrolase compare
Atu1131 -1.4 -5.1 outer membrane protein compare
Atu0925 -1.4 -3.1 hypothetical protein compare
Atu0401 -1.4 -5.8 fructokinase compare
Atu1205 -1.4 -9.0 threonine dehydratase compare
Atu0893 -1.4 -3.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu1687 -1.4 -7.8 anthranilate phosphoribosyltransferase compare
Atu0101 -1.4 -4.8 cytochrome c compare
Atu2709 -1.4 -8.7 3-isopropylmalate dehydratase, large subunit compare
Atu0361 -1.4 -1.5 transcriptional regulator compare
Atu3707 -1.4 -1.5 phosphoserine aminotransferase compare
Atu1028 -1.4 -1.6 hypothetical protein compare
Atu1902 -1.4 -4.3 transketolase compare
Atu2722 -1.3 -4.7 porin compare
Atu0912 -1.3 -1.0 Na+/H+ antiporter compare
Atu1677 -1.3 -2.0 queuine tRNA-ribosyltransferase compare
Atu3744 -1.3 -6.3 ABC transporter permease compare
Atu3014 -1.3 -2.1 hypothetical protein compare
Atu1163 -1.3 -0.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0400 -1.3 -2.1 orotate phosphoribosyltransferase compare
Atu2439 -1.3 -0.5 hypothetical protein compare
Atu3609 -1.3 -4.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu2113 -1.2 -2.0 N-acetylmuramoyl-L-alanine amidase compare
Atu2200 -1.2 -2.4 cold shock protein compare
Atu1242 -1.2 -5.1 cytochrome oxidase assembly factor compare
Atu2790 -1.2 -2.0 3-isopropylmalate dehydratase, small subunit compare
Atu2640 -1.2 -2.7 hypothetical protein compare
Atu0354 -1.2 -1.6 ferric uptake regulator compare
Atu2800 -1.2 -1.5 precorrin-3B C17-methyltransferase compare
Atu2728 -1.2 -0.8 beta (1-->2) glucan export ATP-binding protein compare
Atu2616 -1.2 -1.4 hypothetical protein compare
Atu1503 -1.2 -1.0 hypothetical protein compare
Atu0677 -1.2 -2.2 hypothetical protein compare
Atu4502 -1.2 -3.6 cobalamin synthesis protein compare
Atu0690 -1.2 -1.5 hypothetical protein compare
Atu4055 -1.1 -3.8 endo-1,3-1,4-beta-glycanase compare
Atu0602 -1.1 -4.0 glutamine synthetase compare
Atu1204 -1.1 -3.9 potassium uptake protein compare
Atu3295 -1.1 -2.9 hypothetical protein compare
Atu2791 -1.1 -4.2 3-isopropylmalate dehydrogenase compare
Atu0572 -1.1 -1.7 hypothetical protein compare
Atu8118 -1.1 -3.7 putative universal stress protein compare
Atu1739 -1.1 -1.6 permease compare
Atu1308 -1.1 -4.2 aspartate carbamoyl transferase catalytic subunit compare
Atu2685 -1.1 -7.0 aconitate hydratase compare
Atu4773 -1.1 -0.7 two component response regulator compare
Atu3634 -1.1 -3.1 penicillin-binding protein dacf precursor compare
Atu0138 -1.1 -4.5 surfeit 1 compare
Atu1683 -1.1 -1.2 hypothetical protein compare
Atu5115 -1.0 -1.6 hypothetical protein compare
Atu2399 -1.0 -4.0 hypothetical protein compare
Atu2730 -1.0 -7.7 beta (1-->2) glucan biosynthesis protein compare
Atu1446 -1.0 -1.3 two component response regulator compare
Atu3219 -1.0 -5.6 dihydroxy-acid dehydratase compare
Atu3280 -1.0 -2.8 GntR family transcriptional regulator compare
Atu1645 -1.0 -3.2 ABC transporter, substrate binding protein compare
Atu1803 -1.0 -2.1 cold shock protein compare
Atu1062 -1.0 -1.2 phosphatidylserine synthase compare
Atu0971 -1.0 -0.7 two component sensor kinase compare
Atu1175 -1.0 -1.0 hypothetical protein compare
Atu0846 -1.0 -2.1 transcriptional regulator, MarR family compare
Atu0340 -1.0 -1.3 SAM dependent methyltransferase compare
Atu0036 -1.0 -1.1 hypothetical protein compare
Atu2799 -1.0 -3.2 precorrin-6x reductase compare
Atu5125 -1.0 -2.8 GntR family transcriptional regulator compare
Atu1513 -0.9 -2.7 ABC excinuclease subunit A compare
Atu4514 -0.9 -2.4 RpiR family transcriptional regulator compare
Atu0319 -0.9 -0.9 ubiquinone biosynthesis protein compare
Atu2787 -0.9 -0.7 hypothetical protein compare
Atu0062 -0.9 -4.5 transcriptional regulator, ROK family compare
Atu2831 -0.9 -1.8 glucose inhibited division protein A compare
Atu2824 -0.9 -2.0 hypothetical protein compare
Atu1619 -0.9 -1.0 protein-export membrane protein SECG compare
Atu1850 -0.9 -2.6 phosphoribosylformylglycinamidine synthetase II compare
Atu8096 -0.9 -1.0 hypothetical protein compare
Atu0044 -0.9 -3.9 heat shock protein hslV compare
Atu3517 -0.9 -2.8 acetyltransferase compare
Atu5142 -0.9 -0.9 hypothetical protein compare
Atu2376 -0.9 -1.0 hypothetical protein compare
Atu8018 -0.9 -0.7 hypothetical protein compare
Atu4077 -0.9 -4.1 glycogen branching protein compare
Atu2692 -0.9 -2.2 intracellular septation protein compare
Atu1254 -0.9 -1.2 transcriptional regulator, ArsR family compare
Atu1904 -0.9 -2.4 transcriptional regulator compare
Atu5540 -0.9 -0.7 hypothetical protein compare
Atu1629 -0.9 -0.9 transcriptional regulator, ArsR family compare
Atu2184 -0.9 -3.3 transcriptional regulator, AsnC family compare
Atu0689 -0.8 -4.9 ribosomal large subunit pseudouridine synthase B compare
Atu3604 -0.8 -1.8 hypoxanthine phosphoribosyltransferase compare
Atu1307 -0.8 -3.4 dihydroorotase compare
Atu0837 -0.8 -3.7 transcriptional regulator, MarR family compare
Atu0812 -0.8 -0.9 hypothetical protein compare
Atu0703 -0.8 -1.5 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu2615 -0.8 -1.7 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct across organisms