Experiment set19S390 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu3544 -7.6 -5.3 arsenical pump membrane protein compare
Atu2522 -6.8 -13.0 agrobacterium chromosomal virulence protein B compare
Atu2183 -6.6 -10.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4614 -5.7 -8.7 glycosyltransferase compare
Atu1644 -5.7 -3.7 hypothetical protein compare
Atu4617 -5.1 -10.1 dTDP-D-glucose-4,6-dehydratase compare
Atu1359 -5.0 -1.7 dnaK deletion suppressor protein compare
Atu3353 -4.8 -12.4 mannose-1-phosphate guanylyltransferase compare
Atu4615 -4.5 -11.1 glucose-1-phosphate thymidylyltransferase compare
Atu4618 -4.4 -13.8 dTDP-rhamnose-3,5-epimerase compare
Atu3311 -4.2 -12.6 phosphomannose isomerase compare
Atu1030 -3.9 -2.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0978 -3.8 -5.2 two component response regulator compare
Atu4613 -3.5 -11.1 glycosyltransferase compare
Atu3908 -3.5 -13.4 GntR family transcriptional regulator compare
Atu0040 -3.3 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0050 -3.3 -2.3 two component response regulator compare
Atu0043 -3.3 -3.1 imidazoleglycerol-phosphate dehydratase compare
Atu2073 -3.2 -3.8 membrane protein compare
Atu4166 -3.1 -3.4 UDP-glucose 4-epimerase compare
Atu3706 -3.1 -9.2 D-3-phosphoglycerate dehydrogenase compare
Atu4711 -3.1 -6.4 two component sensor kinase compare
Atu0041 -3.1 -2.4 glutamine amidotransferase compare
Atu0486 -3.0 -3.5 dihydroorotate dehydrogenase compare
Atu2521 -2.9 -15.6 Protein regulated by acid pH compare
Atu1354 -2.9 -1.3 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu4610 -2.8 -9.1 sugar nucleotide epimerase/dehydratase compare
Atu2379 -2.8 -10.4 phosphomannomutase compare
Atu0030 -2.8 -2.1 phosphocarrier protein HPr compare
Atu2067 -2.8 -1.3 hypothetical protein compare
Atu1417 -2.7 -8.2 enoyl-CoA hydratase compare
Atu8095 -2.6 -7.9 hypothetical protein compare
Atu1470 -2.6 -1.6 Camphor resistance protein compare
Atu3707 -2.6 -2.1 phosphoserine aminotransferase compare
Atu0679 -2.5 -8.0 ATP phosphoribosyltransferase compare
Atu0537 -2.5 -8.3 histidinol dehydrogenase compare
Atu0912 -2.5 -1.6 Na+/H+ antiporter compare
Atu0894 -2.5 -2.4 ABC transporter, membrane spanning protein compare
Atu1750 -2.5 -5.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu0051 -2.5 -2.4 two component sensor kinase compare
Atu0678 -2.5 -5.3 histidyl-tRNA synthetase compare
Atu4317 -2.5 -2.4 TetR family transcriptional regulator compare
Atu3727 -2.4 -5.2 hypothetical protein compare
Atu2684 -2.4 -2.6 hypothetical protein compare
Atu1364 -2.3 -4.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1705 -2.3 -6.1 SEC-independent protein translocase protein compare
Atu2832 -2.3 -3.8 tRNA modification GTPase compare
Atu3598 -2.3 -1.4 thiol:disulfide interchange protein compare
Atu1468 -2.2 -9.3 hypothetical protein compare
Atu1588 -2.1 -6.4 homoserine dehydrogenase compare
Atu0692 -2.1 -7.9 glutathione-regulated potassium-efflux system protein compare
Atu2270 -2.1 -2.1 ATP-dependent Clp protease, proteolytic subunit compare
Atu2036 -2.1 -12.1 acetolactate synthase III, large subunit compare
Atu4609 -2.0 -9.1 glycosyltransferase compare
Atu4608 -2.0 -9.6 hypothetical protein compare
Atu8167 -2.0 -8.1 putative transmembrane protein compare
Atu1688 -2.0 -4.5 indole-3-glycerol-phosphate synthase compare
Atu0141 -2.0 -1.1 cytochrome O ubiquinol oxidase subunit I compare
Atu2289 -2.0 -11.3 anthranilate synthase component I and II compare
Atu4616 -2.0 -1.5 dTDP-4-dehydrorhamnose reductase compare
Atu1327 -2.0 -2.8 NADH-ubiquinone oxidoreductase compare
Atu0769 -2.0 -1.3 protoheme IX farnesyltransferase compare
Atu0979 -1.9 -5.4 two component sensor kinase compare
Atu0399 -1.9 -4.9 dihydroorotase compare
Atu1838 -1.9 -2.9 ABC transporter, substrate binding protein (amino acid) compare
Atu0999 -1.9 -1.3 magnesium transport protein compare
Atu1446 -1.9 -2.3 two component response regulator compare
Atu0368 -1.9 -5.3 tRNA pseudouridine synthase I compare
Atu2831 -1.9 -4.0 glucose inhibited division protein A compare
Atu3469 -1.9 -2.5 phosphoglyceromutase compare
Atu3732 -1.9 -8.0 hemolysin compare
Atu1646 -1.9 -3.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu2040 -1.9 -4.5 phosphoserine phosphatase compare
Atu0421 -1.8 -2.0 ABC transporter, membrane spanning protein compare
Atu0099 -1.8 -7.4 prephenate dehydratase compare
Atu1175 -1.8 -1.6 hypothetical protein compare
Atu1810 -1.8 -0.8 hypothetical protein compare
Atu0142 -1.8 -1.8 cytochrome o ubiquinol oxidase subunit II compare
Atu0972 -1.8 -2.0 lipA protein compare
Atu1163 -1.8 -1.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0601 -1.8 -6.6 oxidoreductase compare
Atu0038 -1.8 -3.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0977 -1.8 -3.3 serine protease DO-like protease compare
Atu1677 -1.7 -3.2 queuine tRNA-ribosyltransferase compare
Atu1645 -1.7 -5.4 ABC transporter, substrate binding protein compare
Atu4897 -1.7 -1.9 hypothetical protein compare
Atu0784 -1.7 -2.2 hypothetical protein compare
Atu0086 -1.7 -1.3 ribosome-binding factor A compare
Atu0269 -1.7 -3.9 exodeoxyribonuclease VII large subunit compare
Atu4072 -1.6 -1.2 nodulation protein N compare
Atu1110 -1.6 -2.0 cytosol aminopeptidase compare
Atu5125 -1.6 -4.2 GntR family transcriptional regulator compare
Atu1874 -1.6 -2.2 RecA protein compare
Atu0400 -1.6 -4.2 orotate phosphoribosyltransferase compare
Atu4773 -1.6 -1.0 two component response regulator compare
Atu2640 -1.6 -3.3 hypothetical protein compare
Atu2057 -1.6 -1.8 DNA helicase II compare
Atu2718 -1.5 -5.1 homoserine O-succinyltransferase compare
Atu2722 -1.5 -5.8 porin compare
Atu0039 -1.4 -1.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu1687 -1.4 -5.5 anthranilate phosphoribosyltransferase compare
Atu2264 -1.4 -6.2 2-isopropylmalate synthase compare
Atu1647 -1.4 -4.3 ABC transporter, membrane spanning protein compare
Atu2274 -1.4 -6.4 cation efflux system protein compare
Atu0876 -1.4 -1.2 superoxide dismutase compare
Atu3012 -1.4 -1.5 hypothetical protein compare
Atu1077 -1.3 -3.0 DNA repair protein compare
Atu8054 -1.3 -0.8 hypothetical protein compare
Atu0432 -1.3 -6.3 O-succinylhomoserine sulfhydrylase compare
Atu2824 -1.3 -2.7 hypothetical protein compare
Atu2464 -1.3 -2.8 formyltetrahydrofolate deformylase compare
Atu0017 -1.3 -2.4 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu8168 -1.3 -2.1 hypothetical protein compare
Atu0434 -1.3 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2709 -1.2 -8.3 3-isopropylmalate dehydratase, large subunit compare
Atu2207 -1.2 -2.0 two component sensor kinase compare
Atu2662 -1.2 -0.9 acetyltransferase compare
Atu0298 -1.2 -3.9 orotidine 5 compare
Atu2728 -1.2 -0.8 beta (1-->2) glucan export ATP-binding protein compare
Atu1739 -1.2 -2.1 permease compare
Atu0602 -1.2 -5.0 glutamine synthetase compare
Atu1131 -1.2 -4.0 outer membrane protein compare
Atu1513 -1.2 -3.3 ABC excinuclease subunit A compare
Atu2799 -1.2 -3.5 precorrin-6x reductase compare
Atu0153 -1.2 -3.4 transcriptional regulator, Fur family compare
Atu0331 -1.2 -1.5 sigma-54 modulation protein compare
Atu1803 -1.2 -2.6 cold shock protein compare
Atu6153 -1.1 -3.2 conserved hypothetical protein compare
Atu8088 -1.1 -2.0 hypothetical protein compare
Atu3739 -1.1 -2.8 phosphoglycerate kinase compare
Atu0319 -1.1 -1.1 ubiquinone biosynthesis protein compare
Atu0477 -1.1 -1.7 hypothetical protein compare
Atu4323 -1.1 -4.9 ribitol 2-dehydrogenase compare
Atu2685 -1.1 -8.1 aconitate hydratase compare
Atu1204 -1.1 -4.0 potassium uptake protein compare
Atu1447 -1.1 -1.1 two component sensor kinase compare
Atu0184 -1.1 -2.1 glucokinase compare
Atu2200 -1.1 -2.0 cold shock protein compare
Atu0031 -1.1 -0.7 PTS system, IIA component compare
Atu1902 -1.0 -3.0 transketolase compare
Atu4139 -1.0 -2.2 hypothetical protein compare
Atu1205 -1.0 -5.3 threonine dehydratase compare
Atu0533 -1.0 -2.0 putative inhibitor of septum formation compare
Atu1242 -1.0 -5.1 cytochrome oxidase assembly factor compare
Atu4502 -1.0 -3.8 cobalamin synthesis protein compare
Atu4232 -1.0 -4.1 GntR family transcriptional regulator compare
Atu4161 -1.0 -1.6 hypothetical protein compare
Atu0211 -1.0 -4.4 hypothetical protein compare
Atu0971 -1.0 -0.7 two component sensor kinase compare
Atu1075 -1.0 -4.1 amidophosphoribosyltransferase compare
Atu2249 -1.0 -0.9 hypothetical protein compare
Atu8118 -1.0 -4.6 putative universal stress protein compare
Atu3517 -1.0 -2.8 acetyltransferase compare
Atu3392 -1.0 -1.8 methyltransferase compare
Atu1793 -1.0 -3.7 phosphatidylcholine synthase compare
Atu1103 -1.0 -1.8 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2615 -1.0 -1.5 hypothetical protein compare
Atu2791 -0.9 -3.7 3-isopropylmalate dehydrogenase compare
Atu4205 -0.9 -3.7 TetR family transcriptional regulator compare
Atu0188 -0.9 -0.6 ABC transporter, membrane spanning protein (peptide) compare
Atu3219 -0.9 -5.0 dihydroxy-acid dehydratase compare
Atu2797 -0.9 -1.8 cobalamin biosynthesis protein compare
Atu2730 -0.9 -6.1 beta (1-->2) glucan biosynthesis protein compare
Atu0029 -0.9 -3.6 S-adenosylhomocysteine hydrolase compare
Atu2682 -0.9 -1.5 hypothetical protein compare
Atu2616 -0.9 -1.9 hypothetical protein compare
Atu2209 -0.9 -2.3 pyrroline-5-carboxylate reductase compare
Atu1039 -0.9 -2.3 DNA repair protein RecO compare
Atu1774 -0.9 -1.2 ABC transporter, substrate binding protein (peptide) compare
Atu4890 -0.9 -1.5 IS426 transposase compare
Atu3634 -0.9 -1.9 penicillin-binding protein dacf precursor compare
Atu3963 -0.9 -3.4 GntR family transcriptional regulator compare
Atu3744 -0.9 -4.3 ABC transporter permease compare
Atu0723 -0.9 -0.5 FAD dependent oxidoreductase compare
Atu1844 -0.8 -1.2 Phosphoribosylformylglycinamidine synthetase compare
Atu0687 -0.8 -1.2 hypothetical protein compare
Atu8056 -0.8 -0.8 hypothetical protein compare
Atu1140 -0.8 -1.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0923 -0.8 -2.3 hypothetical protein compare
Atu8138 -0.8 -1.0 hypothetical protein compare
Atu6189 -0.8 -1.2 protein secretion chaperone compare
Atu1307 -0.8 -2.6 dihydroorotase compare
Atu0044 -0.8 -3.6 heat shock protein hslV compare
Atu1380 -0.8 -3.7 zinc metallopeptidase compare
Atu0499 -0.8 -3.5 hypothetical protein compare
Atu2155 -0.8 -5.7 methionine synthase compare
Atu0361 -0.8 -1.2 transcriptional regulator compare
Atu3885 -0.8 -3.7 inositol monophosphatase compare
Atu3884 -0.8 -3.3 hypothetical protein compare
Atu1970 -0.8 -1.6 hypothetical protein compare
Atu2237 -0.8 -2.6 cytochrome c1 compare
Atu1129 -0.8 -2.8 excinuclease ABC chain C compare
Atu1141 -0.8 -3.0 Phosphoribosylglycinamide synthetase compare
Atu2064 -0.8 -3.4 hypothetical protein compare
Atu1357 -0.8 -4.9 hypothetical protein compare
Atu1714 -0.8 -0.7 exonuclease III compare
Atu1971 -0.8 -1.5 hypothetical protein compare
Atu5114 -0.8 -2.5 hypothetical protein compare
Atu1678 -0.8 -2.2 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu0647 -0.8 -2.3 phosphoribosylamine--glycine ligase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in in planta experiments

For in planta Plant=Sorghum_NK_430; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct across organisms