Experiment set19S389 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu2183 -6.5 -10.8 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3353 -6.2 -8.5 mannose-1-phosphate guanylyltransferase compare
Atu3311 -6.1 -18.8 phosphomannose isomerase compare
Atu4617 -5.7 -10.9 dTDP-D-glucose-4,6-dehydratase compare
Atu3544 -5.3 -12.3 arsenical pump membrane protein compare
Atu1359 -5.2 -1.4 dnaK deletion suppressor protein compare
Atu0043 -4.9 -3.0 imidazoleglycerol-phosphate dehydratase compare
Atu4615 -4.8 -12.6 glucose-1-phosphate thymidylyltransferase compare
Atu0978 -4.8 -3.3 two component response regulator compare
Atu4614 -4.5 -8.5 glycosyltransferase compare
Atu4613 -4.4 -11.4 glycosyltransferase compare
Atu4618 -4.4 -13.8 dTDP-rhamnose-3,5-epimerase compare
Atu1468 -4.4 -12.1 hypothetical protein compare
Atu2073 -4.3 -3.0 membrane protein compare
Atu3008 -4.3 -1.2 hypothetical protein compare
Atu4616 -4.2 -2.0 dTDP-4-dehydrorhamnose reductase compare
Atu2522 -4.2 -13.2 agrobacterium chromosomal virulence protein B compare
Atu0039 -4.1 -2.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu4072 -3.7 -1.8 nodulation protein N compare
Atu1470 -3.7 -1.4 Camphor resistance protein compare
Atu0041 -3.6 -2.7 glutamine amidotransferase compare
Atu0040 -3.5 -1.4 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2464 -3.5 -4.1 formyltetrahydrofolate deformylase compare
Atu3598 -3.4 -1.6 thiol:disulfide interchange protein compare
Atu0876 -3.2 -1.7 superoxide dismutase compare
Atu0050 -3.2 -2.2 two component response regulator compare
Atu3706 -3.2 -9.8 D-3-phosphoglycerate dehydrogenase compare
Atu0979 -3.2 -6.7 two component sensor kinase compare
Atu8095 -3.2 -6.9 hypothetical protein compare
Atu3744 -3.1 -15.9 ABC transporter permease compare
Atu3469 -3.1 -2.4 phosphoglyceromutase compare
Atu0030 -3.0 -1.9 phosphocarrier protein HPr compare
Atu1354 -3.0 -1.2 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1513 -3.0 -3.5 ABC excinuclease subunit A compare
Atu4711 -3.0 -6.1 two component sensor kinase compare
Atu3732 -2.9 -9.1 hemolysin compare
Atu2379 -2.8 -7.0 phosphomannomutase compare
Atu1417 -2.8 -7.4 enoyl-CoA hydratase compare
Atu1163 -2.8 -1.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0051 -2.8 -1.9 two component sensor kinase compare
Atu1242 -2.8 -9.8 cytochrome oxidase assembly factor compare
Atu3908 -2.8 -8.4 GntR family transcriptional regulator compare
Atu4166 -2.7 -2.5 UDP-glucose 4-epimerase compare
Atu4317 -2.7 -2.7 TetR family transcriptional regulator compare
Atu0031 -2.6 -1.0 PTS system, IIA component compare
Atu0331 -2.4 -2.4 sigma-54 modulation protein compare
Atu0679 -2.4 -5.2 ATP phosphoribosyltransferase compare
Atu0784 -2.4 -2.3 hypothetical protein compare
Atu8087 -2.3 -1.3 putative peptidoglycan binding protein compare
Atu0138 -2.3 -9.3 surfeit 1 compare
Atu0537 -2.3 -8.2 histidinol dehydrogenase compare
Atu2521 -2.2 -12.5 Protein regulated by acid pH compare
Atu0977 -2.2 -3.8 serine protease DO-like protease compare
Atu1364 -2.2 -4.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2831 -2.2 -4.7 glucose inhibited division protein A compare
Atu0141 -2.2 -1.0 cytochrome O ubiquinol oxidase subunit I compare
Atu2040 -2.1 -4.4 phosphoserine phosphatase compare
Atu5125 -2.1 -4.7 GntR family transcriptional regulator compare
Atu1647 -2.1 -6.1 ABC transporter, membrane spanning protein compare
Atu0142 -2.1 -1.4 cytochrome o ubiquinol oxidase subunit II compare
Atu0361 -2.1 -1.5 transcriptional regulator compare
Atu0189 -2.1 -1.0 ABC transporter, membrane spanning protein (peptide) compare
Atu0769 -2.1 -1.1 protoheme IX farnesyltransferase compare
Atu0912 -2.1 -1.3 Na+/H+ antiporter compare
Atu1131 -2.1 -5.9 outer membrane protein compare
Atu2207 -2.1 -2.9 two component sensor kinase compare
Atu2832 -2.0 -3.7 tRNA modification GTPase compare
Atu3750 -2.0 -3.4 thiamine-phosphate pyrophosphorylase compare
Atu2555 -2.0 -4.3 L-lysine 2,3-aminomutase compare
Atu1588 -2.0 -5.9 homoserine dehydrogenase compare
Atu0153 -2.0 -4.2 transcriptional regulator, Fur family compare
Atu0999 -2.0 -1.4 magnesium transport protein compare
Atu1645 -2.0 -6.3 ABC transporter, substrate binding protein compare
Atu0029 -2.0 -4.5 S-adenosylhomocysteine hydrolase compare
Atu0768 -1.9 -9.7 cytochrome-c oxidase chain I compare
Atu1846 -1.9 -1.5 hypothetical protein compare
Atu0062 -1.9 -8.9 transcriptional regulator, ROK family compare
Atu1810 -1.9 -0.7 hypothetical protein compare
Atu0692 -1.9 -6.1 glutathione-regulated potassium-efflux system protein compare
Atu0101 -1.9 -3.8 cytochrome c compare
Atu3730 -1.8 -1.2 hypothetical protein compare
Atu0601 -1.8 -6.8 oxidoreductase compare
Atu2289 -1.8 -9.3 anthranilate synthase component I and II compare
Atu0368 -1.8 -3.4 tRNA pseudouridine synthase I compare
Atu1030 -1.8 -0.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4610 -1.8 -6.9 sugar nucleotide epimerase/dehydratase compare
Atu1705 -1.8 -4.6 SEC-independent protein translocase protein compare
Atu3183 -1.7 -0.8 hypothetical protein compare
Atu0703 -1.7 -1.8 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu1874 -1.7 -2.3 RecA protein compare
Atu3707 -1.7 -1.6 phosphoserine aminotransferase compare
Atu0777 -1.7 -0.8 hypothetical protein compare
Atu3603 -1.7 -2.5 two component response regulator compare
Atu1291 -1.7 -1.8 hypothetical protein compare
Atu0767 -1.6 -4.9 cytochrome c oxidase subunit II compare
Atu0678 -1.6 -3.8 histidyl-tRNA synthetase compare
Atu4608 -1.6 -8.0 hypothetical protein compare
Atu2442 -1.6 -1.2 hypothetical protein compare
Atu1446 -1.6 -2.0 two component response regulator compare
Atu1327 -1.6 -2.1 NADH-ubiquinone oxidoreductase compare
Atu2722 -1.6 -4.9 porin compare
Atu4609 -1.6 -6.8 glycosyltransferase compare
Atu1219 -1.6 -1.2 hypothetical protein compare
Atu3663 -1.6 -1.3 hypothetical protein compare
Atu1750 -1.6 -4.0 phosphoribosyl c-AMP cyclohydrolase compare
Atu3031 -1.6 -1.1 hypothetical protein compare
Atu1634 -1.6 -1.6 hypothetical protein compare
Atu1644 -1.5 -1.6 hypothetical protein compare
Atu1683 -1.5 -1.5 hypothetical protein compare
Atu0149 -1.5 -3.1 enoyl-(acyl-carrier-protein) reductase compare
Atu0269 -1.5 -4.0 exodeoxyribonuclease VII large subunit compare
Atu8167 -1.5 -6.1 putative transmembrane protein compare
Atu0486 -1.5 -3.1 dihydroorotate dehydrogenase compare
Atu1077 -1.5 -3.1 DNA repair protein compare
Atu4205 -1.5 -4.9 TetR family transcriptional regulator compare
Atu1646 -1.5 -3.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu2057 -1.5 -1.7 DNA helicase II compare
Atu0842 -1.5 -1.3 hypothetical protein compare
Atu0434 -1.5 -1.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4232 -1.5 -5.2 GntR family transcriptional regulator compare
Atu2718 -1.5 -3.8 homoserine O-succinyltransferase compare
Atu3634 -1.4 -3.2 penicillin-binding protein dacf precursor compare
Atu1774 -1.4 -1.0 ABC transporter, substrate binding protein (peptide) compare
Atu8138 -1.4 -1.0 hypothetical protein compare
Atu0038 -1.4 -4.5 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3613 -1.4 -3.8 hypothetical protein compare
Atu0399 -1.4 -3.0 dihydroorotase compare
Atu1838 -1.4 -2.5 ABC transporter, substrate binding protein (amino acid) compare
Atu1767 -1.4 -6.9 transcriptional regulator, AraC family compare
Atu4502 -1.3 -3.8 cobalamin synthesis protein compare
Atu0400 -1.3 -2.6 orotate phosphoribosyltransferase compare
Atu2399 -1.3 -4.6 hypothetical protein compare
Atu0893 -1.3 -3.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu2217 -1.3 -4.2 hypothetical protein compare
Atu3727 -1.3 -3.1 hypothetical protein compare
Atu0017 -1.3 -1.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1688 -1.3 -3.2 indole-3-glycerol-phosphate synthase compare
Atu1803 -1.3 -2.4 cold shock protein compare
Atu2264 -1.3 -6.1 2-isopropylmalate synthase compare
Atu2616 -1.3 -1.7 hypothetical protein compare
Atu0143 -1.3 -6.5 MFS permease compare
Atu8118 -1.3 -5.2 putative universal stress protein compare
Atu0184 -1.3 -3.0 glucokinase compare
Atu1110 -1.2 -1.9 cytosol aminopeptidase compare
Atu3739 -1.2 -2.4 phosphoglycerate kinase compare
Atu2113 -1.2 -2.5 N-acetylmuramoyl-L-alanine amidase compare
Atu2640 -1.2 -2.8 hypothetical protein compare
Atu6098 -1.2 -0.9 transcriptional regulator, HTH family compare
Atu4773 -1.2 -0.7 two component response regulator compare
Atu4685 -1.2 -4.1 LacI family transcriptional regulator compare
Atu4530 -1.2 -2.5 TetR family transcriptional regulator compare
Atu2163 -1.1 -1.0 hypothetical protein compare
Atu2193 -1.1 -0.7 hypothetical protein compare
Atu2791 -1.1 -4.3 3-isopropylmalate dehydrogenase compare
Atu1062 -1.1 -1.2 phosphatidylserine synthase compare
Atu6114 -1.1 -1.5 hypothetical protein compare
Atu4323 -1.1 -3.6 ribitol 2-dehydrogenase compare
Atu4446 -1.1 -5.2 hypothetical protein compare
Atu2274 -1.1 -4.5 cation efflux system protein compare
Atu0488 -1.1 -1.5 hypothetical protein compare
Atu0044 -1.1 -3.7 heat shock protein hslV compare
Atu3182 -1.1 -2.1 hypothetical protein compare
Atu0923 -1.1 -2.6 hypothetical protein compare
Atu2155 -1.1 -7.2 methionine synthase compare
Atu0045 -1.1 -4.8 heat shock chaperone compare
Atu2052 -1.1 -2.4 hypothetical protein compare
Atu3219 -1.0 -6.6 dihydroxy-acid dehydratase compare
Atu2036 -1.0 -6.1 acetolactate synthase III, large subunit compare
Atu0953 -1.0 -0.8 hypothetical protein compare
Atu3018 -1.0 -3.6 hypothetical protein compare
Atu1793 -1.0 -3.9 phosphatidylcholine synthase compare
Atu8036 -1.0 -2.7 protein YBGT-like protein compare
Atu1189 -1.0 -1.5 hypothetical protein compare
Atu0099 -1.0 -3.3 prephenate dehydratase compare
Atu2577 -1.0 -7.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu3427 -1.0 -1.6 hypothetical protein compare
Atu2368 -1.0 -1.0 hypothetical protein compare
Atu0837 -1.0 -4.3 transcriptional regulator, MarR family compare
Atu2590 -1.0 -5.4 hypothetical protein compare
Atu2344 -1.0 -1.8 lactoylglutathione lyase compare
Atu2685 -1.0 -7.0 aconitate hydratase compare
Atu2787 -1.0 -0.5 hypothetical protein compare
Atu1204 -1.0 -3.2 potassium uptake protein compare
Atu1687 -1.0 -5.1 anthranilate phosphoribosyltransferase compare
Atu2406 -1.0 -2.0 hypothetical protein compare
Atu0188 -1.0 -0.5 ABC transporter, membrane spanning protein (peptide) compare
Atu4541 -1.0 -2.9 carboxymuconolactone decarboxylase compare
Atu0477 -1.0 -1.2 hypothetical protein compare
Atu5115 -1.0 -1.4 hypothetical protein compare
Atu2583 -1.0 -5.6 glycosyltransferase compare
Atu4753 -1.0 -2.1 amino acid ABC transporter permease compare
Atu0432 -1.0 -2.8 O-succinylhomoserine sulfhydrylase compare
Atu3885 -1.0 -3.3 inositol monophosphatase compare
Atu1447 -0.9 -1.4 two component sensor kinase compare
Atu0602 -0.9 -3.2 glutamine synthetase compare
Atu2615 -0.9 -2.0 hypothetical protein compare
Atu0354 -0.9 -1.0 ferric uptake regulator compare
Atu1205 -0.9 -6.0 threonine dehydratase compare
Atu1967 -0.9 -3.0 hypothetical protein compare
Atu0687 -0.9 -1.3 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct across organisms