Experiment set19S385 for Agrobacterium fabrum C58

Compare to:

Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct

200 most important genes:

  gene name fitness t score description  
Atu2183 -4.8 -7.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2522 -4.8 -12.7 agrobacterium chromosomal virulence protein B compare
Atu3353 -4.3 -8.6 mannose-1-phosphate guanylyltransferase compare
Atu3311 -4.3 -11.9 phosphomannose isomerase compare
Atu3544 -3.9 -10.9 arsenical pump membrane protein compare
Atu0039 -3.8 -1.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu1030 -3.7 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0030 -3.6 -1.6 phosphocarrier protein HPr compare
Atu2073 -3.5 -3.4 membrane protein compare
Atu1359 -3.3 -1.2 dnaK deletion suppressor protein compare
Atu6098 -3.3 -1.2 transcriptional regulator, HTH family compare
Atu1364 -3.2 -4.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4615 -3.2 -7.2 glucose-1-phosphate thymidylyltransferase compare
Atu4317 -3.2 -2.6 TetR family transcriptional regulator compare
Atu3598 -3.1 -1.4 thiol:disulfide interchange protein compare
Atu4616 -3.1 -1.5 dTDP-4-dehydrorhamnose reductase compare
Atu0086 -3.1 -1.1 ribosome-binding factor A compare
Atu1327 -3.1 -2.4 NADH-ubiquinone oxidoreductase compare
Atu3732 -3.0 -12.7 hemolysin compare
Atu0978 -3.0 -5.4 two component response regulator compare
Atu4711 -3.0 -6.1 two component sensor kinase compare
Atu0050 -2.9 -2.0 two component response regulator compare
Atu1468 -2.8 -10.0 hypothetical protein compare
Atu2832 -2.8 -3.7 tRNA modification GTPase compare
Atu3744 -2.8 -11.3 ABC transporter permease compare
Atu0331 -2.8 -1.7 sigma-54 modulation protein compare
Atu2125 -2.7 -1.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu1439 -2.6 -1.6 hypothetical protein compare
Atu4618 -2.6 -5.7 dTDP-rhamnose-3,5-epimerase compare
Atu1163 -2.6 -0.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1644 -2.6 -2.1 hypothetical protein compare
Atu0041 -2.5 -2.0 glutamine amidotransferase compare
Atu3706 -2.5 -7.7 D-3-phosphoglycerate dehydrogenase compare
Atu0051 -2.4 -1.7 two component sensor kinase compare
Atu1470 -2.4 -1.2 Camphor resistance protein compare
Atu1242 -2.4 -7.8 cytochrome oxidase assembly factor compare
Atu2379 -2.4 -5.6 phosphomannomutase compare
Atu4610 -2.3 -8.5 sugar nucleotide epimerase/dehydratase compare
Atu0703 -2.3 -2.3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0977 -2.3 -3.3 serine protease DO-like protease compare
Atu2464 -2.3 -3.2 formyltetrahydrofolate deformylase compare
Atu1874 -2.3 -2.2 RecA protein compare
Atu0036 -2.3 -1.5 hypothetical protein compare
Atu0876 -2.2 -1.5 superoxide dismutase compare
Atu4613 -2.2 -5.6 glycosyltransferase compare
Atu0953 -2.2 -1.1 hypothetical protein compare
Atu4072 -2.2 -1.3 nodulation protein N compare
Atu1646 -2.2 -4.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu0692 -2.2 -5.9 glutathione-regulated potassium-efflux system protein compare
Atu2521 -2.2 -9.2 Protein regulated by acid pH compare
Atu8095 -2.1 -4.8 hypothetical protein compare
Atu0399 -2.1 -4.9 dihydroorotase compare
Atu4614 -2.1 -3.5 glycosyltransferase compare
Atu0038 -2.1 -3.6 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0138 -2.0 -7.9 surfeit 1 compare
Atu3727 -2.0 -3.9 hypothetical protein compare
Atu4166 -2.0 -1.8 UDP-glucose 4-epimerase compare
Atu4617 -2.0 -3.5 dTDP-D-glucose-4,6-dehydratase compare
Atu1714 -2.0 -1.0 exonuclease III compare
Atu0400 -2.0 -2.7 orotate phosphoribosyltransferase compare
Atu0784 -2.0 -2.1 hypothetical protein compare
Atu5164 -2.0 -1.0 type IV secretion protein AvhB3 compare
Atu0601 -1.9 -6.8 oxidoreductase compare
Atu0319 -1.9 -1.2 ubiquinone biosynthesis protein compare
Atu3712 -1.9 -1.2 hypothetical protein compare
Atu1739 -1.9 -2.8 permease compare
Atu0141 -1.8 -0.8 cytochrome O ubiquinol oxidase subunit I compare
Atu0142 -1.8 -1.2 cytochrome o ubiquinol oxidase subunit II compare
Atu0101 -1.8 -4.6 cytochrome c compare
Atu0769 -1.8 -0.9 protoheme IX farnesyltransferase compare
Atu1647 -1.8 -5.5 ABC transporter, membrane spanning protein compare
Atu3908 -1.8 -8.3 GntR family transcriptional regulator compare
Atu0678 -1.8 -4.5 histidyl-tRNA synthetase compare
Atu0189 -1.8 -0.8 ABC transporter, membrane spanning protein (peptide) compare
Atu2684 -1.8 -1.9 hypothetical protein compare
Atu8167 -1.8 -8.4 putative transmembrane protein compare
Atu4609 -1.8 -8.0 glycosyltransferase compare
Atu1705 -1.8 -4.7 SEC-independent protein translocase protein compare
Atu0999 -1.7 -1.2 magnesium transport protein compare
Atu1810 -1.7 -0.6 hypothetical protein compare
Atu2017 -1.7 -1.0 hypothetical protein compare
Atu2052 -1.7 -2.3 hypothetical protein compare
Atu3750 -1.7 -2.9 thiamine-phosphate pyrophosphorylase compare
Atu2040 -1.6 -3.5 phosphoserine phosphatase compare
Atu0537 -1.6 -6.6 histidinol dehydrogenase compare
Atu0486 -1.6 -3.3 dihydroorotate dehydrogenase compare
Atu0679 -1.6 -3.8 ATP phosphoribosyltransferase compare
Atu1588 -1.6 -6.6 homoserine dehydrogenase compare
Atu1446 -1.6 -1.8 two component response regulator compare
Atu2554 -1.6 -2.2 lysyl-tRNA synthetase compare
Atu0768 -1.6 -7.9 cytochrome-c oxidase chain I compare
Atu1645 -1.6 -5.3 ABC transporter, substrate binding protein compare
Atu0269 -1.6 -3.5 exodeoxyribonuclease VII large subunit compare
Atu0296 -1.5 -5.6 NADH-ubiquinone oxidoreductase compare
Atu1417 -1.5 -3.6 enoyl-CoA hydratase compare
Atu4205 -1.5 -6.8 TetR family transcriptional regulator compare
Atu1103 -1.5 -1.9 rRNA-adenine N6,N6-dimethyltransferase compare
Atu1750 -1.5 -3.4 phosphoribosyl c-AMP cyclohydrolase compare
Atu0690 -1.5 -1.6 hypothetical protein compare
Atu3730 -1.5 -0.9 hypothetical protein compare
Atu1204 -1.5 -4.6 potassium uptake protein compare
Atu0777 -1.5 -0.6 hypothetical protein compare
Atu1850 -1.4 -1.8 phosphoribosylformylglycinamidine synthetase II compare
Atu1175 -1.4 -1.1 hypothetical protein compare
Atu0272 -1.4 -4.1 transcriptional regulator, MarR family compare
Atu0043 -1.4 -1.4 imidazoleglycerol-phosphate dehydratase compare
Atu1182 -1.4 -1.2 hypothetical protein compare
Atu1380 -1.4 -6.4 zinc metallopeptidase compare
Atu1219 -1.4 -0.9 hypothetical protein compare
Atu3739 -1.4 -2.2 phosphoglycerate kinase compare
Atu4608 -1.4 -6.1 hypothetical protein compare
Atu0979 -1.4 -2.8 two component sensor kinase compare
Atu2289 -1.4 -7.7 anthranilate synthase component I and II compare
Atu0361 -1.4 -1.5 transcriptional regulator compare
Atu2692 -1.4 -2.4 intracellular septation protein compare
Atu0093 -1.3 -3.4 Recombination protein compare
Atu5125 -1.3 -2.8 GntR family transcriptional regulator compare
Atu4232 -1.3 -5.2 GntR family transcriptional regulator compare
Atu3613 -1.3 -3.7 hypothetical protein compare
Atu2193 -1.3 -0.6 hypothetical protein compare
Atu1677 -1.3 -2.1 queuine tRNA-ribosyltransferase compare
Atu3469 -1.3 -1.6 phosphoglyceromutase compare
Atu0153 -1.3 -3.3 transcriptional regulator, Fur family compare
Atu0044 -1.3 -3.9 heat shock protein hslV compare
Atu2831 -1.3 -3.8 glucose inhibited division protein A compare
Atu0421 -1.3 -1.3 ABC transporter, membrane spanning protein compare
Atu4148 -1.3 -5.1 UDP-glucuronic acid epimerase compare
Atu0062 -1.3 -5.7 transcriptional regulator, ROK family compare
Atu8036 -1.3 -2.4 protein YBGT-like protein compare
Atu1028 -1.2 -1.2 hypothetical protein compare
Atu1131 -1.2 -5.0 outer membrane protein compare
Atu2270 -1.2 -1.2 ATP-dependent Clp protease, proteolytic subunit compare
Atu2722 -1.2 -2.9 porin compare
Atu2083 -1.2 -1.2 DNA repair protein RecN compare
Atu4323 -1.2 -4.2 ribitol 2-dehydrogenase compare
Atu4446 -1.2 -4.5 hypothetical protein compare
Atu2439 -1.2 -0.4 hypothetical protein compare
Atu3698 -1.2 -2.2 thioredoxin compare
Atu0143 -1.2 -6.8 MFS permease compare
Atu1793 -1.2 -5.9 phosphatidylcholine synthase compare
Atu2237 -1.2 -3.2 cytochrome c1 compare
Atu0340 -1.1 -1.3 SAM dependent methyltransferase compare
Atu4053 -1.1 -1.1 succinoglycan biosynthesis protein compare
Atu3707 -1.1 -1.2 phosphoserine aminotransferase compare
Atu2432 -1.1 -1.7 hypothetical protein compare
Atu0040 -1.1 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu2239 -1.1 -2.6 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0893 -1.1 -2.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu2790 -1.1 -1.5 3-isopropylmalate dehydratase, small subunit compare
Atu1449 -1.1 -3.8 potassium uptake protein compare
Atu0886 -1.1 -0.8 hypothetical protein compare
Atu4346 -1.1 -3.2 hypothetical protein compare
Atu3663 -1.1 -1.2 hypothetical protein compare
Atu3392 -1.1 -1.8 methyltransferase compare
Atu2155 -1.1 -6.6 methionine synthase compare
Atu2207 -1.1 -2.2 two component sensor kinase compare
Atu2184 -1.1 -4.4 transcriptional regulator, AsnC family compare
Atu4027 -1.1 -3.5 cytochrome c2 compare
Atu0236 -1.1 -1.5 hypothetical protein compare
Atu0031 -1.0 -0.5 PTS system, IIA component compare
Atu3120 -1.0 -0.7 hypothetical protein compare
Atu4040 -1.0 -2.1 hypothetical protein compare
Atu5045 -1.0 -1.7 hypothetical protein compare
Atu0767 -1.0 -2.8 cytochrome c oxidase subunit II compare
Atu2590 -1.0 -3.8 hypothetical protein compare
Atu1467 -1.0 -1.8 hypothetical protein compare
Atu4139 -1.0 -1.3 hypothetical protein compare
Atu8018 -1.0 -0.6 hypothetical protein compare
Atu0368 -1.0 -2.6 tRNA pseudouridine synthase I compare
Atu2036 -1.0 -6.3 acetolactate synthase III, large subunit compare
Atu2274 -1.0 -2.6 cation efflux system protein compare
Atu2791 -1.0 -5.0 3-isopropylmalate dehydrogenase compare
Atu0602 -1.0 -4.7 glutamine synthetase compare
Atu0419 -1.0 -1.6 two component sensor kinase compare
Atu0045 -1.0 -5.3 heat shock chaperone compare
Atu0479 -1.0 -3.7 ABC transporter, substrate binding protein (amino acid) compare
Atu2264 -1.0 -5.9 2-isopropylmalate synthase compare
Atu2577 -1.0 -6.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu2650 -1.0 -4.5 glycerol-3-phosphate dehydrogenase compare
Atu1967 -1.0 -2.9 hypothetical protein compare
Atu0029 -1.0 -2.9 S-adenosylhomocysteine hydrolase compare
Atu4502 -0.9 -3.5 cobalamin synthesis protein compare
Atu0535 -0.9 -2.9 hypothetical protein compare
Atu2685 -0.9 -4.8 aconitate hydratase compare
Atu8118 -0.9 -3.4 putative universal stress protein compare
Atu3807 -0.9 -3.1 AsnC family transcriptional regulator compare
Atu2591 -0.9 -4.0 glucosyltransferase compare
Atu3249 -0.9 -2.0 septum formation inhibitor compare
Atu1688 -0.9 -2.9 indole-3-glycerol-phosphate synthase compare
Atu3609 -0.9 -2.4 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu4092 -0.9 -5.7 cytochrome d oxidase subunit II compare
Atu1255 -0.9 -3.5 oxidoreductase compare
Atu0544 -0.9 -0.9 hypothetical protein compare
Atu1536 -0.9 -3.8 cytochrome C oxidase, FixO chain compare
Atu8177 -0.9 -2.1 hypothetical protein compare
Atu1902 -0.9 -3.2 transketolase compare
Atu0640 -0.9 -1.7 hypothetical protein compare
Atu1546 -0.9 -3.0 transcriptional regulator, MerR family compare
Atu2368 -0.9 -0.9 hypothetical protein compare
Atu4890 -0.9 -1.2 IS426 transposase compare


Specific Phenotypes

For 4 genes in this experiment

For in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct in Agrobacterium fabrum C58

For in planta Plant=Sorghum_NK_300; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct across organisms