Experiment set19IT095 for Pseudomonas putida KT2440

Compare to:

Urea nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_2341 -6.7 -3.3 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
PP_0293 -6.4 -3.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5185 -6.0 -4.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1986 -5.9 -3.6 3-isopropylmalate dehydratase small subunit compare
PP_0290 -5.9 -7.0 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -5.8 -4.0 tryptophan synthase alpha chain compare
PP_1079 -5.8 -6.6 Ornithine carbamoyltransferase compare
PP_3505 -5.7 -2.8 conserved protein of unknown function compare
PP_0422 -5.6 -4.9 Indole-3-glycerol phosphate synthase compare
PP_2371 -5.5 -6.6 Sulphite reductase hemoprotein, beta subunit compare
PP_3365 -5.2 -1.5 Acetolactate synthase compare
PP_0289 -5.1 -10.3 Imidazoleglycerol-phosphate dehydratase compare
PP_5289 -5.1 -4.9 Acetylglutamate kinase compare
PP_2168 -4.9 -10.9 Transaldolase compare
PP_5014 -4.8 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0164 -4.7 -3.3 conserved protein of unknown function compare
PP_4696 -4.7 -3.3 Nitrogen regulation protein NR(I) compare
PP_0967 -4.6 -8.8 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1988 -4.6 -7.4 3-isopropylmalate dehydrogenase compare
PP_5347 -4.6 -13.2 pyruvate carboxylase subunit A compare
PP_0966 -4.5 -9.1 Histidinol dehydrogenase compare
PP_0083 -4.1 -7.5 tryptophan synthase beta chain compare
PP_4902 -4.1 -2.8 Oligoribonuclease compare
PP_5346 -4.0 -8.7 pyruvate carboxylase subunit B compare
PP_5075 -4.0 -10.0 glutamate synthase (NADPH) beta subunit compare
PP_1912 -4.0 -6.1 Phosphate acyltransferase compare
PP_5008 -4.0 -1.6 Poly granule-associated protein compare
PP_0417 -4.0 -13.4 Anthranilate synthase component 1 compare
PP_2402 -4.0 -2.7 putative Sensor histidine kinase compare
PP_5303 -3.9 -5.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1088 -3.8 -10.0 Argininosuccinate synthase compare
PP_4680 -3.8 -11.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4122 -3.8 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1826 -3.8 -3.5 Hydrolase, isochorismatase family compare
PP_4678 -3.8 -9.6 Ketol-acid reductoisomerase compare
PP_0420 -3.8 -7.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_3511 -3.8 -5.4 Branched-chain-amino-acid aminotransferase compare
PP_0184 -3.7 -6.0 Argininosuccinate lyase compare
PP_0965 -3.7 -6.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5097 -3.7 -9.6 homoserine O-acetyltransferase compare
PP_1985 -3.7 -3.6 3-isopropylmalate dehydratase large subunit compare
PP_5348 -3.7 -6.6 Transcriptional regulator, LysR family compare
PP_5076 -3.7 -11.7 L-glutamate synthase(NADPH) alpha subunit compare
PP_2378 -3.7 -2.5 Fe/S biogenesis protein NfuA compare
PP_5098 -3.6 -5.5 methionine biosynthesis protein MetW compare
PP_1025 -3.6 -9.8 2-isopropylmalate synthase compare
PP_2328 -3.6 -6.9 Phosphoadenosine phosphosulfate reductase compare
PP_4890 -3.6 -4.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_2001 -3.5 -7.1 O-succinylhomoserine sulfhydrylase compare
PP_1994 -3.3 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_0291 -3.1 -3.7 conserved protein of unknown function compare
PP_4126 -3.1 -2.1 NADH-quinone oxidoreductase subunit I compare
PP_1099 -3.0 -3.2 Cold shock protein CapB compare
PP_0787 -2.9 -2.9 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1022 -2.9 -5.4 glucose 6-phosphate-1-dehydrogenase compare
PP_5048 -2.9 -4.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_1995 -2.9 -6.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_5028 -2.9 -4.3 proline iminopeptidase compare
PP_5015 -2.8 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3999 -2.7 -7.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0292 -2.7 -2.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2370 -2.7 -2.8 conserved protein of unknown function compare
PP_1664 -2.6 -1.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_4546 -2.6 -1.8 ATP-dependent helicase HrpA compare
PP_5128 -2.6 -5.6 Dihydroxy-acid dehydratase compare
PP_2253 -2.6 -1.9 Transcriptional regulator, GntR family compare
PP_0547 -2.6 -4.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0735 -2.6 -1.9 molybdopterin-synthase adenylyltransferase compare
PP_4679 -2.6 -4.7 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2345 -2.4 -3.3 conserved exported protein of unknown function compare
PP_0087 -2.4 -2.0 conserved exported protein of unknown function compare
PP_4700 -2.4 -1.7 pantothenate synthetase compare
PP_0888 -2.3 -2.7 Photosynthetic apparatus regulatory protein RegA compare
PP_1097 -2.3 -1.3 Methionine--tRNA ligase compare
PP_5095 -2.3 -1.3 pyrroline-5-carboxylate reductase compare
PP_1468 -2.3 -1.9 Tyrosine recombinase XerD compare
PP_5331 -2.3 -3.3 Long-chain acyl-CoA thioester hydrolase compare
PP_1733 -2.3 -3.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_4532 -2.3 -1.9 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_4909 -2.2 -4.3 phosphoserine phosphatase compare
PP_3105 -2.2 -1.8 conserved membrane protein of unknown function compare
PP_1898 -2.2 -2.7 MotA/TolQ/ExbB proton channel family protein compare
PP_2327 -2.2 -4.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0421 -2.2 -4.2 Anthranilate phosphoribosyltransferase compare
PP_3508 -2.2 -1.7 Protein CobW compare
PP_0406 -2.1 -2.7 Nucleotidyltransferase family protein compare
PP_1679 -2.1 -1.5 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1589 -2.0 -6.1 uridylyltransferase compare
PP_5022 -2.0 -1.5 Glutamine transport ATP-binding protein GlnQ compare
PP_0363 -2.0 -6.7 8-amino-7-oxononanoate synthase compare
PP_0566 -1.9 -1.2 translation-related factor compare
PP_2568 -1.9 -1.3 Ring-cleaving dioxygenase compare
PP_4785 -1.9 -3.9 conserved exported protein of unknown function compare
PP_3040 -1.9 -1.8 Pyocin R2_PP, holin compare
PP_5217 -1.9 -5.6 Polyphosphate kinase compare
PP_0801 -1.9 -1.2 conserved exported protein of unknown function compare
PP_1672 -1.9 -2.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_4131 -1.9 -5.1 NADH-quinone oxidoreductase subunit N compare
PP_0949 -1.8 -4.5 putative ATP-binding protein UPF0042 compare
PP_4480 -1.8 -4.6 arginine N-succinyltransferase, subunit alpha compare
PP_0364 -1.8 -4.1 pimeloyl-[acp] methyl ester esterase compare
PP_2747 -1.8 -1.4 conserved protein of unknown function compare
PP_0365 -1.8 -4.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4120 -1.7 -3.3 NADH-quinone oxidoreductase subunit B compare
PP_5533 -1.7 -1.5 conserved protein of unknown function compare
PP_4977 -1.7 -5.0 5,10-methylenetetrahydrofolate reductase compare
PP_5203 -1.7 -3.4 5-formyltetrahydrofolate cyclo-ligase compare
PP_2681 -1.7 -1.4 coenzyme PQQ synthesis protein D compare
PP_0914 -1.7 -5.0 GGDEF domain protein compare
PP_1654 -1.7 -2.5 cysteine synthase B compare
PP_0957 -1.7 -1.4 D-arabinose 5-phosphate isomerase compare
PP_1493 -1.7 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_0393 -1.7 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1322 -1.7 -1.7 putative Lipoprotein compare
PP_4804 -1.6 -2.8 RlpA-like lipoprotein compare
PP_0366 -1.6 -4.3 dethiobiotin synthetase compare
PP_4828 -1.6 -1.4 Precorrin-8X methylmutase compare
PP_3241 -1.6 -1.3 conserved exported protein of unknown function compare
PP_0719 -1.6 -1.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1231 -1.6 -2.9 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1736 -1.6 -1.4 conserved protein of unknown function compare
PP_0434 -1.6 -2.6 Anhydro-N-acetylmuramic acid kinase compare
PP_1677 -1.6 -3.0 Adenosyl-cobyric acid synthase compare
PP_5640 -1.6 -2.0 conserved protein of unknown function compare
PP_3417 -1.6 -2.0 D-gluconate transporter compare
PP_2748 -1.6 -3.8 putative Branched-chain amino acid ABC transporter, ATP-binding protein compare
PP_0153 -1.6 -1.5 hypothetical protein compare
PP_t12 -1.6 -1.0 tRNA-Thr compare
PP_1344 -1.5 -1.1 conserved protein of unknown function compare
PP_2404 -1.5 -3.0 conserved exported protein of unknown function compare
PP_4874 -1.5 -1.3 50S ribosomal protein L9 compare
PP_1734 -1.5 -2.2 Probable septum site-determining protein MinC compare
PP_1362 -1.5 -2.4 pyruvate kinase II compare
PP_5227 -1.5 -4.5 diaminopimelate decarboxylase compare
PP_1217 -1.5 -2.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1783 -1.5 -1.7 dTDP-glucose pyrophosphorylase compare
PP_0962 -1.5 -1.8 toluene-tolerance protein compare
PP_3036 -1.5 -2.7 conserved protein of unknown function compare
PP_3034 -1.5 -1.9 putative Regulator protein compare
PP_1216 -1.5 -1.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_4560 -1.5 -1.0 putative Ribonuclease BN compare
PP_2499 -1.5 -1.2 conserved protein of unknown function compare
PP_4338 -1.4 -3.2 Chemotaxis histidine kinase CheA compare
PP_4660 -1.4 -1.3 Transcriptional regulator, LysR family compare
PP_5248 -1.4 -0.6 putative hydrolase compare
PP_2375 -1.4 -6.2 cobalamin-dependent methionine synthase compare
PP_4964 -1.4 -2.5 D-erythrose 4-phosphate dehydrogenase compare
PP_1211 -1.4 -2.0 conserved protein of unknown function compare
PP_1742 -1.4 -2.0 conserved inner membrane protein of unknown function compare
PP_4695 -1.4 -5.2 Sensory box histidine kinase compare
PP_2540 -1.4 -2.2 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_4642 -1.3 -1.0 Cyclic diguanosine monophosphate-binding protein compare
PP_0945 -1.3 -2.0 conserved protein of unknown function compare
PP_0362 -1.3 -4.6 Biotin synthase compare
PP_4477 -1.3 -3.7 N-succinylarginine dihydrolase compare
PP_1304 -1.3 -4.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2459 -1.3 -2.5 ribose pyranase compare
PP_5295 -1.3 -1.8 conserved protein of unknown function compare
PP_5007 -1.3 -1.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_5104 -1.3 -3.5 thiazole synthase compare
PP_4699 -1.3 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_3110 -1.3 -1.3 protein of unknown function compare
PP_0274 -1.3 -1.0 putative transcriptional regulator containing HTH domain compare
PP_0001 -1.3 -1.0 probable chromosome-partitioning protein compare
PP_4541 -1.3 -2.2 peptidyl-prolyl cis-trans isomerase A (rotamase A) compare
PP_1673 -1.2 -2.9 cobyrinate a,c-diamide synthase compare
PP_4340 -1.2 -1.8 response regulator for chemotactic signal transduction compare
PP_5310 -1.2 -2.9 junction-specific ATP-dependent DNA helicase compare
PP_1479 -1.2 -1.8 HicB protein compare
PP_5644 -1.2 -1.6 conserved membrane protein of unknown function compare
PP_0640 -1.2 -1.8 conserved protein of unknown function compare
PP_0963 -1.2 -1.6 putative BolA family protein compare
PP_0232 -1.2 -1.0 ATP-binding taurine transporter subunit compare
PP_1233 -1.2 -2.2 sulfurtransferase compare
PP_5639 -1.2 -4.7 conserved exported protein of unknown function compare
PP_1381 -1.2 -1.0 4-carboxymuconolactone decarboxylase compare
PP_4994 -1.2 -2.5 conserved protein of unknown function compare
PP_4406 -1.2 -1.7 conserved protein of unknown function compare
PP_2172 -1.2 -2.3 conserved exported protein of unknown function compare
PP_4966 -1.2 -0.7 transcriptional regulator of methionine metabolism compare
PP_4824 -1.2 -3.3 Sensor histidine kinase/response regulator compare
PP_4984 -1.2 -4.7 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1303 -1.2 -3.1 Sulfate adenylyltransferase subunit 2 compare
PP_1214 -1.1 -1.4 putative transcriptional regulatory protein compare
PP_2336 -1.1 -2.4 aconitate hydratase 1 compare
PP_1015 -1.1 -2.8 mannose/glucose ABC transporter, glucose-binding periplasmic protein compare
PP_0377 -1.1 -1.3 coenzyme PQQ synthesis protein D compare
PP_0065 -1.1 -1.8 NAD-binding component of TrK potassium transporter compare
PP_0258 -1.1 -1.9 regulator of murein cross-linking compare
PP_4379 -1.1 -2.2 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_0345 -1.1 -2.1 putative Heptose kinase WapP compare
PP_0755 -1.1 -2.9 conserved protein of unknown function compare
PP_5047 -1.1 -2.2 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_3487 -1.1 -2.2 conserved exported protein of unknown function compare
PP_4332 -1.1 -1.5 Chemotaxis protein CheW compare
PP_5610 -1.1 -1.5 protein of unknown function compare
PP_5327 -1.1 -2.4 putative phosphate ABC transporter, permease subunit compare
PP_1764 -1.1 -1.6 Phosphoglycolate phosphatase 2 compare
PP_2140 -1.1 -1.6 conserved protein of unknown function compare
PP_1731 -1.1 -1.8 23S rRNA (746) and tRNA (32) pseudouridine synthase compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source D-Glucose across organisms