Experiment set19IT094 for Pseudomonas putida KT2440

Compare to:

Urea nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0422 -7.2 -5.0 Indole-3-glycerol phosphate synthase compare
PP_3511 -6.5 -7.7 Branched-chain-amino-acid aminotransferase compare
PP_4679 -6.4 -4.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -6.4 -2.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_2371 -6.0 -4.1 Sulphite reductase hemoprotein, beta subunit compare
PP_1986 -5.9 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_0082 -5.8 -4.0 tryptophan synthase alpha chain compare
PP_2370 -5.7 -3.5 conserved protein of unknown function compare
PP_0083 -5.7 -3.9 tryptophan synthase beta chain compare
PP_1568 -5.5 -1.4 conserved protein of unknown function compare
PP_5347 -5.2 -11.7 pyruvate carboxylase subunit A compare
PP_0566 -5.1 -1.3 translation-related factor compare
PP_5014 -4.8 -3.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_0292 -4.7 -3.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4696 -4.7 -3.2 Nitrogen regulation protein NR(I) compare
PP_0290 -4.6 -5.9 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2575 -4.5 -1.6 conserved exported protein of unknown function compare
PP_0420 -4.5 -9.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5098 -4.5 -7.6 methionine biosynthesis protein MetW compare
PP_1079 -4.5 -4.4 Ornithine carbamoyltransferase compare
PP_4561 -4.5 -1.1 stress response protein compare
PP_1528 -4.3 -1.5 conserved protein of unknown function compare
PP_5075 -4.2 -11.2 glutamate synthase (NADPH) beta subunit compare
PP_1898 -4.2 -3.8 MotA/TolQ/ExbB proton channel family protein compare
PP_0291 -4.1 -3.6 conserved protein of unknown function compare
PP_4680 -4.0 -10.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1988 -4.0 -5.9 3-isopropylmalate dehydrogenase compare
PP_5097 -4.0 -9.7 homoserine O-acetyltransferase compare
PP_2328 -3.9 -7.5 Phosphoadenosine phosphosulfate reductase compare
PP_2402 -3.9 -2.6 putative Sensor histidine kinase compare
PP_1088 -3.9 -9.9 Argininosuccinate synthase compare
PP_0966 -3.8 -7.0 Histidinol dehydrogenase compare
PP_0289 -3.8 -5.3 Imidazoleglycerol-phosphate dehydratase compare
PP_3378 -3.7 -2.2 putative 2-ketogluconokinase compare
PP_2168 -3.7 -7.5 Transaldolase compare
PP_5076 -3.7 -12.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_1673 -3.6 -5.4 cobyrinate a,c-diamide synthase compare
PP_1985 -3.6 -4.0 3-isopropylmalate dehydratase large subunit compare
PP_4678 -3.5 -9.4 Ketol-acid reductoisomerase compare
PP_3773 -3.5 -2.4 conserved protein of unknown function compare
PP_1231 -3.5 -4.8 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0417 -3.5 -10.9 Anthranilate synthase component 1 compare
PP_2217 -3.5 -2.4 enoyl-CoA hydratase compare
PP_1995 -3.4 -5.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1589 -3.4 -8.0 uridylyltransferase compare
PP_5093 -3.3 -1.1 twitching motility protein compare
PP_5128 -3.3 -5.6 Dihydroxy-acid dehydratase compare
PP_4994 -3.3 -3.4 conserved protein of unknown function compare
PP_1994 -3.2 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_0184 -3.2 -5.3 Argininosuccinate lyase compare
PP_1025 -3.2 -8.6 2-isopropylmalate synthase compare
PP_1237 -3.2 -1.3 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_2327 -3.1 -4.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4136 -3.0 -1.1 Transcriptional regulator, LuxR family compare
PP_0122 -3.0 -2.6 conserved exported protein of unknown function compare
PP_4701 -3.0 -1.1 glucose-6-phosphate isomerase compare
PP_4902 -3.0 -3.0 Oligoribonuclease compare
PP_4874 -3.0 -1.5 50S ribosomal protein L9 compare
PP_0965 -2.9 -5.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0967 -2.9 -5.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_4253 -2.9 -2.8 cytochrome c oxidase subunit, cbb3-type compare
PP_0848 -2.9 -2.5 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_0421 -2.9 -4.3 Anthranilate phosphoribosyltransferase compare
PP_0962 -2.9 -3.2 toluene-tolerance protein compare
PP_5015 -2.8 -2.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5303 -2.8 -2.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1764 -2.8 -3.8 Phosphoglycolate phosphatase 2 compare
PP_2253 -2.7 -2.5 Transcriptional regulator, GntR family compare
PP_5048 -2.7 -3.7 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2001 -2.6 -4.7 O-succinylhomoserine sulfhydrylase compare
PP_4890 -2.6 -2.2 ATP phosphoribosyltransferase regulatory subunit compare
PP_3239 -2.5 -2.0 putative cointegrate resolution protein T Tn4652 compare
PP_1664 -2.5 -2.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_0434 -2.4 -4.0 Anhydro-N-acetylmuramic acid kinase compare
PP_2433 -2.4 -2.3 conserved protein of unknown function compare
PP_4700 -2.4 -1.6 pantothenate synthetase compare
PP_5095 -2.4 -1.2 pyrroline-5-carboxylate reductase compare
PP_5348 -2.4 -3.9 Transcriptional regulator, LysR family compare
PP_5185 -2.4 -3.3 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3792 -2.3 -2.8 conserved protein of unknown function compare
PP_4797 -2.3 -2.1 conserved protein of unknown function compare
PP_5350 -2.3 -3.3 Transcriptional regulator, RpiR family compare
PP_1304 -2.3 -5.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_2336 -2.3 -4.5 aconitate hydratase 1 compare
PP_3449 -2.3 -1.8 conserved exported protein of unknown function compare
PP_0846 -2.3 -1.1 DnaK-like molecular chaperone specific for IscU compare
PP_0362 -2.2 -6.2 Biotin synthase compare
PP_t29 -2.2 -1.4 tRNA-Ala compare
PP_0254 -2.2 -1.5 conserved protein of unknown function compare
PP_5289 -2.2 -2.6 Acetylglutamate kinase compare
PP_2883 -2.1 -1.8 conserved protein of unknown function compare
PP_0065 -2.1 -3.4 NAD-binding component of TrK potassium transporter compare
PP_1022 -2.1 -3.9 glucose 6-phosphate-1-dehydrogenase compare
PP_5155 -2.1 -3.4 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5331 -2.1 -1.9 Long-chain acyl-CoA thioester hydrolase compare
PP_2145 -2.1 -2.7 beta-N-acetylglucosaminidase compare
PP_4785 -2.1 -4.5 conserved exported protein of unknown function compare
PP_0406 -2.1 -2.6 Nucleotidyltransferase family protein compare
PP_5508 -2.0 -1.2 conserved protein of unknown function compare
PP_4247 -2.0 -1.0 Exonuclease compare
PP_4909 -2.0 -3.9 phosphoserine phosphatase compare
PP_0787 -2.0 -1.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5346 -2.0 -3.6 pyruvate carboxylase subunit B compare
PP_3999 -2.0 -5.0 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_0365 -2.0 -4.3 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0855 -2.0 -2.3 conserved protein of unknown function compare
PP_3417 -2.0 -2.7 D-gluconate transporter compare
PP_0393 -1.9 -1.3 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1426 -1.9 -6.2 L-aspartate oxidase compare
PP_0914 -1.9 -5.3 GGDEF domain protein compare
PP_4988 -1.9 -6.3 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4695 -1.9 -6.5 Sensory box histidine kinase compare
PP_5279 -1.9 -1.9 conserved protein of unknown function compare
PP_4720 -1.8 -1.8 putative RNA binding protein compare
PP_2302 -1.8 -3.7 DNA-binding, ATP-dependent protease compare
PP_1011 -1.8 -3.6 glucokinase compare
PP_4977 -1.8 -4.6 5,10-methylenetetrahydrofolate reductase compare
PP_4273 -1.8 -1.4 Transcriptional regulator, MerR family compare
PP_1396 -1.8 -2.3 conserved protein of unknown function compare
PP_0274 -1.8 -1.0 putative transcriptional regulator containing HTH domain compare
PP_4225 -1.8 -4.5 two component system DNA-binding transcriptional activator QseB compare
PP_1176 -1.8 -1.7 conserved protein of unknown function compare
PP_2922 -1.8 -2.1 Urea amidolyase-related protein compare
PP_0794 -1.8 -3.5 1-phosphofructokinase monomer compare
PP_5058 -1.8 -3.0 Carboxy-terminal-processing protease compare
PP_5310 -1.8 -5.1 junction-specific ATP-dependent DNA helicase compare
PP_5217 -1.7 -4.6 Polyphosphate kinase compare
PP_0735 -1.7 -1.0 molybdopterin-synthase adenylyltransferase compare
PP_0363 -1.7 -5.4 8-amino-7-oxononanoate synthase compare
PP_0547 -1.7 -3.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4122 -1.6 -1.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4993 -1.6 -2.8 Glutathione synthetase compare
PP_t13 -1.6 -1.7 tRNA-Lys compare
PP_4296 -1.6 -1.2 conserved exported protein of unknown function compare
PP_4804 -1.6 -1.8 RlpA-like lipoprotein compare
PP_5390 -1.6 -2.0 conserved hypothetical protein compare
PP_2976 -1.6 -1.3 putative transposase compare
PP_1012 -1.6 -3.2 DNA-binding response regulator compare
PP_2334 -1.6 -3.4 2-methylisocitrate lyase compare
PP_4199 -1.6 -0.9 putative Lipoprotein compare
PP_0719 -1.6 -0.9 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_2375 -1.6 -5.4 cobalamin-dependent methionine synthase compare
PP_3002 -1.5 -1.8 shikimate dehydrogenase-related enzyme compare
PP_1575 -1.5 -1.1 conserved protein of unknown function compare
PP_4151 -1.5 -2.1 Excisionase domain protein compare
PP_2820 -1.5 -2.2 HTH-type transcriptional regulator nfxB compare
PP_3833 -1.5 -2.0 Response regulator compare
PP_5028 -1.5 -2.9 proline iminopeptidase compare
PP_4480 -1.5 -3.8 arginine N-succinyltransferase, subunit alpha compare
PP_4131 -1.5 -3.9 NADH-quinone oxidoreductase subunit N compare
PP_0164 -1.5 -2.8 conserved protein of unknown function compare
PP_2087 -1.5 -1.1 CmpX protein compare
PP_4984 -1.5 -4.0 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_3906 -1.4 -1.8 conserved protein of unknown function compare
PP_5609 -1.4 -2.2 conserved protein of unknown function compare
PP_4546 -1.4 -2.8 ATP-dependent helicase HrpA compare
PP_4129 -1.4 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0127 -1.4 -2.0 Thiol:disulfide interchange protein compare
PP_2414 -1.4 -1.4 conserved exported protein of unknown function compare
PP_2313 -1.4 -1.7 conserved membrane protein of unknown function compare
PP_5658 -1.4 -0.9 protein of unknown function compare
PP_3874 -1.4 -1.4 conserved protein of unknown function compare
PP_5295 -1.3 -1.1 conserved protein of unknown function compare
PP_1935 -1.3 -0.9 Transcriptional regulator, Cro/CI family compare
PP_3164 -1.3 -1.6 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
PP_1493 -1.3 -1.8 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2227 -1.3 -2.9 putative Multicomponent potassium-proton antiporter, subunit E compare
PP_4320 -1.3 -2.5 cytochrome c-type biogenesis protein compare
PP_4045 -1.3 -2.2 conserved protein of unknown function compare
PP_0999 -1.3 -1.4 carbamate kinase compare
PP_0086 -1.3 -1.6 conserved protein of unknown function compare
PP_5430 -1.3 -2.2 protein of unknown function compare
PP_1523 -1.3 -2.0 conserved protein of unknown function compare
PP_5035 -1.3 -2.8 Histidine utilization repressor compare
PP_0364 -1.3 -3.5 pimeloyl-[acp] methyl ester esterase compare
PP_4964 -1.3 -1.7 D-erythrose 4-phosphate dehydrogenase compare
PP_2280 -1.3 -1.2 conserved protein of unknown function compare
PP_1553 -1.3 -1.2 conserved protein of unknown function compare
PP_2215 -1.3 -2.6 acetyl-CoA acetyltransferase compare
PP_4529 -1.3 -1.3 conserved protein of unknown function compare
PP_4824 -1.3 -3.7 Sensor histidine kinase/response regulator compare
PP_2309 -1.3 -1.0 conserved protein of unknown function compare
PP_3020 -1.3 -1.7 putative Serine/threonine protein phosphatase compare
PP_5017 -1.2 -0.8 Sec-independent protein translocase protein TatB compare
PP_1317 -1.2 -1.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2878 -1.2 -1.8 conserved protein of unknown function compare
PP_0405 -1.2 -3.1 conserved protein of unknown function compare
PP_1208 -1.2 -1.5 conserved protein of unknown function, SlyX family compare
PP_3105 -1.2 -0.9 conserved membrane protein of unknown function compare
PP_4846 -1.2 -1.5 L-amino acid N-acyltransferase compare
PP_2880 -1.2 -1.3 Transcriptional regulator, TetR family compare
PP_4008 -1.2 -2.5 ATP-dependent serine protease compare
PP_3819 -1.2 -3.4 glutathione reductase (NADPH) compare
PP_4488 -1.2 -2.4 conserved exported protein of unknown function compare
PP_4880 -1.2 -4.2 exoribonuclease R compare
PP_1678 -1.2 -2.8 bifunctional cobinamide-P guanylyltransferase - adenosylcobinamide kinase compare
PP_2274 -1.1 -2.5 conserved protein of unknown function compare
PP_4827 -1.1 -3.6 Precorrin-2 C(20)-methyltransferase compare
PP_1926 -1.1 -2.4 putative phosphotyrosine-protein phosphatase compare
PP_3013 -1.1 -2.3 conserved protein of unknown function compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in nitrogen source experiments

For nitrogen source D-Glucose across organisms