Experiment set19IT093 for Pseudomonas putida KT2440

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_5048 -7.2 -5.0 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0293 -6.4 -2.5 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1985 -6.4 -4.4 3-isopropylmalate dehydratase large subunit compare
PP_0292 -6.4 -3.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5098 -6.3 -7.4 methionine biosynthesis protein MetW compare
PP_5128 -6.1 -10.9 Dihydroxy-acid dehydratase compare
PP_2168 -6.0 -11.5 Transaldolase compare
PP_0082 -5.8 -4.0 tryptophan synthase alpha chain compare
PP_5015 -5.5 -3.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2327 -5.4 -3.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2371 -5.3 -7.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0420 -5.3 -9.0 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0422 -5.3 -5.6 Indole-3-glycerol phosphate synthase compare
PP_3365 -5.2 -1.2 Acetolactate synthase compare
PP_1706 -5.2 -5.7 Nitrite reductase compare
PP_2088 -5.1 -2.8 RNA polymerase sigma factor SigX compare
PP_1589 -5.1 -9.1 uridylyltransferase compare
PP_0417 -5.0 -16.4 Anthranilate synthase component 1 compare
PP_1988 -5.0 -7.5 3-isopropylmalate dehydrogenase compare
PP_4679 -5.0 -8.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0421 -4.7 -7.9 Anthranilate phosphoribosyltransferase compare
PP_1142 -4.7 -1.1 conserved protein of unknown function compare
PP_5047 -4.7 -6.5 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_5075 -4.6 -11.5 glutamate synthase (NADPH) beta subunit compare
PP_1293 -4.6 -1.5 molybdopterin synthase small subunit compare
PP_4680 -4.6 -11.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0967 -4.6 -7.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -4.5 -8.3 Histidinol dehydrogenase compare
PP_0735 -4.5 -1.4 molybdopterin-synthase adenylyltransferase compare
PP_1995 -4.5 -6.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4909 -4.5 -6.8 phosphoserine phosphatase compare
PP_0290 -4.3 -7.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4890 -4.3 -3.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_0184 -4.2 -7.6 Argininosuccinate lyase compare
PP_4952 -4.1 -1.3 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5303 -4.1 -4.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4902 -4.1 -2.6 Oligoribonuclease compare
PP_4804 -4.0 -2.8 RlpA-like lipoprotein compare
PP_2328 -4.0 -7.4 Phosphoadenosine phosphosulfate reductase compare
PP_4696 -3.8 -6.4 Nitrogen regulation protein NR(I) compare
PP_1088 -3.8 -9.6 Argininosuccinate synthase compare
PP_4122 -3.8 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3999 -3.8 -9.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1366 -3.8 -1.2 Transcriptional regulator MvaT, P16 subunit compare
PP_5076 -3.8 -11.5 L-glutamate synthase(NADPH) alpha subunit compare
PP_5347 -3.7 -8.4 pyruvate carboxylase subunit A compare
PP_4678 -3.7 -9.0 Ketol-acid reductoisomerase compare
PP_2001 -3.7 -7.1 O-succinylhomoserine sulfhydrylase compare
PP_1493 -3.7 -4.5 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2378 -3.6 -2.5 Fe/S biogenesis protein NfuA compare
PP_5097 -3.6 -8.2 homoserine O-acetyltransferase compare
PP_3511 -3.6 -4.5 Branched-chain-amino-acid aminotransferase compare
PP_4098 -3.6 -1.8 UvrABC system protein C compare
PP_4808 -3.6 -2.1 23S rRNA m3psi1915 methyltransferase compare
PP_2093 -3.5 -5.8 NasT conserved
PP_1231 -3.5 -4.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_2370 -3.4 -3.2 conserved protein of unknown function compare
PP_0289 -3.4 -5.2 Imidazoleglycerol-phosphate dehydratase compare
PP_1025 -3.4 -7.5 2-isopropylmalate synthase compare
PP_1362 -3.3 -4.5 pyruvate kinase II compare
PP_0083 -3.3 -5.1 tryptophan synthase beta chain compare
PP_1079 -3.3 -4.3 Ornithine carbamoyltransferase compare
PP_4785 -3.3 -4.5 conserved exported protein of unknown function compare
PP_0965 -3.3 -5.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_0152 -3.2 -2.1 conserved exported protein of unknown function compare
PP_5346 -3.2 -5.7 pyruvate carboxylase subunit B compare
PP_5217 -3.2 -7.3 Polyphosphate kinase compare
PP_1041 -3.1 -1.9 twin arginine protein export complex subunit compare
PP_4480 -3.1 -6.9 arginine N-succinyltransferase, subunit alpha compare
PP_1237 -3.1 -1.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5007 -3.1 -3.0 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2092 -3.0 -4.5 Nitrate transporter conserved
PP_0787 -3.0 -2.8 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_5348 -3.0 -4.3 Transcriptional regulator, LysR family compare
PP_1303 -2.9 -5.4 Sulfate adenylyltransferase subunit 2 compare
PP_5202 -2.9 -2.2 putative cell division protein compare
PP_5589 -2.9 -2.7 protein of unknown function containing Rhs repeat-associated core domain compare
PP_4504 -2.8 -1.6 conserved exported protein of unknown function compare
PP_2121 -2.8 -2.2 putative Lipoprotein compare
PP_1294 -2.7 -2.2 molybdopterin synthase large subunit compare
PP_5014 -2.7 -2.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_1733 -2.7 -3.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_1705 -2.5 -5.1 nitrite reductase [NAD(P)H] large subunit conserved
PP_5393 -2.5 -1.4 putative metal-binding chaperone compare
PP_5185 -2.5 -3.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_5248 -2.5 -1.4 putative hydrolase compare
PP_1428 -2.5 -1.4 Sigma factor AlgU negative regulatory protein compare
PP_1629 -2.4 -5.7 Protein RecA compare
PP_4693 -2.4 -3.7 RNA polymerase-binding transcription factor DksA compare
PP_4700 -2.4 -1.6 pantothenate synthetase compare
PP_1233 -2.4 -2.6 sulfurtransferase compare
PP_2900 -2.4 -2.1 conserved protein of unknown function compare
PP_1012 -2.4 -3.0 DNA-binding response regulator compare
PP_3241 -2.4 -1.3 conserved exported protein of unknown function compare
PP_0001 -2.3 -1.3 probable chromosome-partitioning protein compare
PP_2402 -2.3 -2.0 putative Sensor histidine kinase compare
PP_4829 -2.2 -2.4 putative precorrin-3B synthase compare
PP_0246 -2.2 -2.3 two-component system DNA-binding response transcriptional dual regulator compare
PP_2160 -2.2 -3.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
PP_1935 -2.2 -1.6 Transcriptional regulator, Cro/CI family compare
PP_2123 -2.2 -5.3 molybdenum::molybdopterin ligase compare
PP_t29 -2.2 -1.4 tRNA-Ala compare
PP_5289 -2.2 -1.9 Acetylglutamate kinase compare
PP_4120 -2.2 -3.4 NADH-quinone oxidoreductase subunit B compare
PP_1702 -2.1 -3.2 Recombination-associated protein RdgC compare
PP_1001 -2.1 -3.0 arginine deiminase compare
PP_1164 -2.1 -1.9 Transcriptional regulator, LysR family compare
PP_4977 -2.1 -5.6 5,10-methylenetetrahydrofolate reductase compare
PP_0914 -2.1 -4.8 GGDEF domain protein compare
PP_1304 -2.0 -4.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5681 -2.0 -2.9 conserved protein of unknown function compare
PP_1269 -2.0 -1.0 Universal stress protein family compare
PP_1508 -2.0 -1.4 conserved protein of unknown function compare
PP_1654 -2.0 -2.4 cysteine synthase B compare
PP_4263 -2.0 -2.2 putative membrane-bounded cytochrome biogenesis cycZ-like domain, copper tolerance protein compare
PP_1679 -1.9 -1.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_1703 -1.9 -5.8 assimilatory nitrate reductase/sulfite reductase conserved
PP_0164 -1.9 -3.6 conserved protein of unknown function compare
PP_1783 -1.9 -1.3 dTDP-glucose pyrophosphorylase compare
PP_4701 -1.9 -0.9 glucose-6-phosphate isomerase compare
PP_1322 -1.9 -1.5 putative Lipoprotein compare
PP_4994 -1.9 -2.3 conserved protein of unknown function compare
PP_2291 -1.9 -2.1 conserved protein of unknown function compare
PP_1986 -1.9 -1.8 3-isopropylmalate dehydratase small subunit compare
PP_4129 -1.9 -3.4 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0653 -1.9 -1.1 conserved protein of unknown function compare
PP_1841 -1.9 -3.1 Cytochrome c family protein compare
PP_5533 -1.9 -1.3 conserved protein of unknown function compare
PP_1912 -1.9 -2.4 Phosphate acyltransferase compare
PP_5350 -1.8 -2.8 Transcriptional regulator, RpiR family compare
PP_4204 -1.8 -4.7 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_3105 -1.8 -1.0 conserved membrane protein of unknown function compare
PP_0406 -1.8 -1.8 Nucleotidyltransferase family protein compare
PP_0122 -1.8 -1.4 conserved exported protein of unknown function compare
PP_4364 -1.8 -1.8 putative Anti-sigma F factor antagonist compare
PP_1018 -1.8 -2.9 mannose/glucose ABC transporter - ATP binding subunit compare
PP_0291 -1.8 -1.7 conserved protein of unknown function compare
PP_4699 -1.7 -2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_4695 -1.7 -5.2 Sensory box histidine kinase compare
PP_1979 -1.7 -1.7 putative Hydrolase compare
PP_1756 -1.7 -2.6 conserved exported protein of unknown function compare
PP_2032 -1.7 -3.6 putative ATPase compare
PP_4131 -1.7 -4.4 NADH-quinone oxidoreductase subunit N compare
PP_4830 -1.7 -3.6 precorrin-6Y C(5,15)-methyltransferase compare
PP_0725 -1.7 -2.8 conserved hypothetical TPR repeat protein compare
PP_3037 -1.7 -1.2 C4-type zinc finger protein, DksA/TraR family compare
PP_2302 -1.7 -3.9 DNA-binding, ATP-dependent protease compare
PP_4811 -1.7 -2.4 Gamma-glutamyl phosphate reductase compare
PP_2094 -1.7 -3.3 putative Nitrate-binding protein NasS conserved
PP_4984 -1.7 -4.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_1825 -1.7 -2.0 conserved exported protein of unknown function compare
PP_4004 -1.6 -2.4 DNA translocase FtsK compare
PP_0630 -1.6 -0.9 DNA gyrase inhibitor YacG compare
PP_5155 -1.6 -2.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4253 -1.6 -1.8 cytochrome c oxidase subunit, cbb3-type compare
PP_4891 -1.6 -2.5 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3880 -1.6 -1.2 conserved exported protein of unknown function compare
PP_4988 -1.6 -5.1 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_2136 -1.6 -2.1 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_3824 -1.6 -1.7 conserved exported protein of unknown function compare
PP_1348 -1.6 -2.1 putative MutT/nudix family protein/thiamine-phosphate pyrophosphorylase compare
PP_1292 -1.6 -3.6 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_3892 -1.6 -1.0 conserved protein of unknown function compare
PP_5241 -1.5 -1.3 DNA-binding response regulator, LuxR family compare
PP_0989 -1.5 -1.6 glycine cleavage system H protein 1 compare
PP_1731 -1.5 -2.6 23S rRNA (746) and tRNA (32) pseudouridine synthase compare
PP_2147 -1.5 -1.0 conserved exported protein of unknown function compare
PP_0916 -1.5 -1.5 Amino acid transporter LysE compare
PP_5295 -1.5 -1.0 conserved protein of unknown function compare
PP_4961 -1.5 -1.1 putative Lipoprotein compare
PP_0236 -1.5 -1.1 NAD(P)H-dependent FMN reductase subunit compare
PP_4797 -1.5 -1.5 conserved protein of unknown function compare
PP_4058 -1.5 -4.5 1,4-alpha-glucan branching enzyme compare
PP_4818 -1.5 -2.0 ribosomal protein L11 methyltransferase compare
PP_5159 -1.5 -2.0 conserved protein of unknown function compare
PP_0888 -1.4 -1.4 Photosynthetic apparatus regulatory protein RegA compare
PP_1417 -1.4 -2.1 putative Tricarboxylate transport protein TctB compare
PP_3384 -1.4 -2.0 gluconate 2-dehydrogenase gamma subunit compare
PP_3876 -1.4 -1.2 conserved protein of unknown function compare
PP_1697 -1.4 -1.2 transcriptional regulator, GntR family compare
PP_3318 -1.4 -1.3 conserved protein of unknown function compare
PP_1317 -1.4 -1.6 Ubiquinol-cytochrome c reductase iron-sulfur subunit compare
PP_2243 -1.4 -2.6 conserved protein of unknown function compare
PP_0513 -1.4 -1.5 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0048 -1.4 -0.9 conserved protein of unknown function compare
PP_5227 -1.4 -3.8 diaminopimelate decarboxylase compare
PP_4532 -1.4 -1.0 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_5203 -1.4 -3.1 5-formyltetrahydrofolate cyclo-ligase compare
PP_1553 -1.4 -1.1 conserved protein of unknown function compare
PP_0516 -1.4 -2.0 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II compare
PP_0393 -1.3 -1.8 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3551 -1.3 -0.8 DNA-binding response regulator, LuxR family compare
PP_2646 -1.3 -1.3 conserved protein of unknown function compare
PP_1808 -1.3 -1.3 glucose-6-phosphate isomerase compare
PP_1552 -1.3 -2.5 putative Phage replication protein compare
PP_0872 -1.3 -2.9 Peptide chain release factor 3 compare
PP_5610 -1.3 -1.1 protein of unknown function compare
PP_3417 -1.3 -1.8 D-gluconate transporter compare
PP_3075 -1.3 -1.2 putative transcriptional regulator compare
PP_3814 -1.3 -1.6 Polyamine ABC transporter, periplasmic polyamine-binding protein compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas putida KT2440

For nitrogen source D-Glucose across organisms