Experiment set19IT092 for Pseudomonas putida KT2440

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.5 -3.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0422 -5.8 -5.7 Indole-3-glycerol phosphate synthase compare
PP_2309 -5.7 -1.5 conserved protein of unknown function compare
PP_5075 -5.6 -15.6 glutamate synthase (NADPH) beta subunit compare
PP_1988 -5.4 -8.4 3-isopropylmalate dehydrogenase compare
PP_0082 -5.2 -7.2 tryptophan synthase alpha chain compare
PP_2088 -5.2 -3.4 RNA polymerase sigma factor SigX compare
PP_4680 -5.2 -14.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5289 -5.2 -5.0 Acetylglutamate kinase compare
PP_1269 -5.1 -1.4 Universal stress protein family compare
PP_2371 -5.1 -7.8 Sulphite reductase hemoprotein, beta subunit compare
PP_2122 -5.0 -4.4 molybdenum cofactor biosynthesis protein B compare
PP_5014 -4.9 -3.4 Phosphoribosyl-AMP cyclohydrolase compare
PP_5047 -4.9 -6.9 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_4696 -4.8 -3.3 Nitrogen regulation protein NR(I) compare
PP_2327 -4.7 -7.2 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1293 -4.7 -1.8 molybdopterin synthase small subunit compare
PP_5048 -4.7 -5.3 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_0083 -4.7 -8.9 tryptophan synthase beta chain compare
PP_1995 -4.7 -8.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0417 -4.5 -15.3 Anthranilate synthase component 1 compare
PP_0420 -4.5 -9.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0290 -4.5 -6.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1589 -4.5 -11.6 uridylyltransferase compare
PP_1088 -4.5 -12.0 Argininosuccinate synthase compare
PP_5346 -4.4 -8.8 pyruvate carboxylase subunit B compare
PP_5347 -4.4 -11.5 pyruvate carboxylase subunit A compare
PP_1079 -4.1 -4.3 Ornithine carbamoyltransferase compare
PP_4804 -4.1 -2.8 RlpA-like lipoprotein compare
PP_5076 -4.1 -14.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_0184 -4.1 -7.1 Argininosuccinate lyase compare
PP_2402 -4.1 -2.8 putative Sensor histidine kinase compare
PP_3999 -4.0 -7.7 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_1705 -4.0 -8.5 nitrite reductase [NAD(P)H] large subunit conserved
PP_2168 -4.0 -9.0 Transaldolase compare
PP_4828 -4.0 -1.5 Precorrin-8X methylmutase compare
PP_4122 -3.9 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0421 -3.9 -6.6 Anthranilate phosphoribosyltransferase compare
PP_0966 -3.9 -7.3 Histidinol dehydrogenase compare
PP_5097 -3.8 -8.8 homoserine O-acetyltransferase compare
PP_0289 -3.8 -6.7 Imidazoleglycerol-phosphate dehydratase compare
PP_5098 -3.8 -6.1 methionine biosynthesis protein MetW compare
PP_2370 -3.7 -3.8 conserved protein of unknown function compare
PP_0967 -3.7 -6.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1022 -3.7 -5.6 glucose 6-phosphate-1-dehydrogenase compare
PP_2001 -3.6 -6.5 O-succinylhomoserine sulfhydrylase compare
PP_3580 -3.6 -3.1 conserved protein of unknown function compare
PP_t29 -3.6 -2.3 tRNA-Ala compare
PP_5701 -3.5 -2.0 conserved protein of unknown function compare
PP_3511 -3.5 -6.0 Branched-chain-amino-acid aminotransferase compare
PP_4678 -3.5 -9.2 Ketol-acid reductoisomerase compare
PP_5155 -3.4 -3.6 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1994 -3.4 -2.3 tRNA pseudouridine (38-40)synthase compare
PP_1985 -3.3 -5.4 3-isopropylmalate dehydratase large subunit compare
PP_4679 -3.3 -5.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5093 -3.3 -1.2 twitching motility protein compare
PP_2093 -3.3 -6.6 NasT conserved
PP_5128 -3.3 -5.8 Dihydroxy-acid dehydratase compare
PP_1986 -3.1 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_0965 -3.0 -6.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1353 -3.0 -3.5 conserved membrane protein of unknown function compare
PP_0566 -3.0 -1.4 translation-related factor compare
PP_2328 -2.9 -5.9 Phosphoadenosine phosphosulfate reductase compare
PP_5350 -2.8 -4.1 Transcriptional regulator, RpiR family compare
PP_0292 -2.8 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1654 -2.8 -4.1 cysteine synthase B compare
PP_1468 -2.7 -2.2 Tyrosine recombinase XerD compare
PP_4785 -2.7 -5.0 conserved exported protein of unknown function compare
PP_1231 -2.7 -4.6 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0787 -2.7 -3.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_1025 -2.7 -7.3 2-isopropylmalate synthase compare
PP_1233 -2.6 -3.2 sulfurtransferase compare
PP_4890 -2.6 -4.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_5185 -2.5 -4.1 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4782 -2.5 -4.0 Phosphomethylpyrimidine kinase compare
PP_5015 -2.5 -2.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_2107 -2.5 -2.2 conserved protein of unknown function compare
PP_0653 -2.5 -1.5 conserved protein of unknown function compare
PP_4480 -2.5 -6.1 arginine N-succinyltransferase, subunit alpha compare
PP_1679 -2.5 -1.9 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_3417 -2.4 -3.6 D-gluconate transporter compare
PP_1706 -2.4 -3.6 Nitrite reductase compare
PP_4835 -2.4 -1.6 conserved exported protein of unknown function compare
PP_5027 -2.4 -1.7 D-tyrosyl-tRNA(Tyr) deacylase compare
PP_3519 -2.3 -1.2 putative Lipoprotein compare
PP_0914 -2.3 -5.8 GGDEF domain protein compare
PP_2307 -2.2 -1.4 conserved protein of unknown function compare
PP_4902 -2.2 -2.2 Oligoribonuclease compare
PP_4909 -2.2 -3.9 phosphoserine phosphatase compare
PP_1703 -2.1 -7.5 assimilatory nitrate reductase/sulfite reductase conserved
PP_1898 -2.1 -2.9 MotA/TolQ/ExbB proton channel family protein compare
PP_4824 -2.0 -6.1 Sensor histidine kinase/response regulator compare
PP_5348 -2.0 -4.4 Transcriptional regulator, LysR family compare
PP_4247 -2.0 -1.6 Exonuclease compare
PP_2145 -2.0 -3.0 beta-N-acetylglucosaminidase compare
PP_4199 -2.0 -1.2 putative Lipoprotein compare
PP_0001 -2.0 -1.9 probable chromosome-partitioning protein compare
PP_2123 -2.0 -5.0 molybdenum::molybdopterin ligase compare
PP_4994 -1.9 -2.9 conserved protein of unknown function compare
PP_4124 -1.9 -4.5 NADH-quinone oxidoreductase subunit G compare
PP_5017 -1.9 -1.1 Sec-independent protein translocase protein TatB compare
PP_1099 -1.9 -2.0 Cold shock protein CapB compare
PP_4993 -1.9 -3.9 Glutathione synthetase compare
PP_1292 -1.9 -4.4 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_0547 -1.9 -4.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0984 -1.8 -3.3 conserved membrane protein of unknown function compare
PP_4121 -1.8 -4.6 NADH-quinone oxidoreductase subunit C/D compare
PP_4058 -1.8 -5.8 1,4-alpha-glucan branching enzyme compare
PP_0888 -1.8 -2.3 Photosynthetic apparatus regulatory protein RegA compare
PP_1217 -1.8 -3.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2092 -1.7 -4.5 Nitrate transporter conserved
PP_5303 -1.7 -3.3 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1826 -1.7 -1.9 Hydrolase, isochorismatase family compare
PP_4895 -1.7 -2.0 tRNA dimethylallyltransferase compare
PP_5095 -1.7 -1.1 pyrroline-5-carboxylate reductase compare
PP_1362 -1.7 -2.9 pyruvate kinase II compare
PP_4693 -1.7 -3.8 RNA polymerase-binding transcription factor DksA compare
PP_0719 -1.6 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_5217 -1.6 -5.4 Polyphosphate kinase compare
PP_5313 -1.6 -2.1 DNA-binding protein HU-alpha compare
PP_2094 -1.6 -4.1 putative Nitrate-binding protein NasS conserved
PP_0366 -1.6 -3.7 dethiobiotin synthetase compare
PP_4364 -1.6 -1.7 putative Anti-sigma F factor antagonist compare
PP_1303 -1.6 -3.2 Sulfate adenylyltransferase subunit 2 compare
PP_3637 -1.5 -1.3 putative Sulfonate ABC transporter, ATP-binding protein compare
PP_1764 -1.5 -1.6 Phosphoglycolate phosphatase 2 compare
PP_0735 -1.5 -1.0 molybdopterin-synthase adenylyltransferase compare
PP_3332 -1.5 -3.2 putative cytochrome c-type protein compare
PP_1294 -1.5 -2.6 molybdopterin synthase large subunit compare
PP_1912 -1.5 -2.8 Phosphate acyltransferase compare
PP_1304 -1.5 -4.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0999 -1.5 -2.0 carbamate kinase compare
PP_1054 -1.4 -1.0 Type II secretion pathway protein XcpZ compare
PP_4786 -1.4 -3.0 conserved protein of unknown function compare
PP_5279 -1.4 -2.0 conserved protein of unknown function compare
PP_3505 -1.4 -1.1 conserved protein of unknown function compare
PP_1656 -1.4 -4.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_1733 -1.4 -1.8 membrane ATPase of the MinC-MinD-MinE system compare
PP_0852 -1.4 -2.9 Transcriptional regulator, Cro/CI family compare
PP_2880 -1.4 -1.2 Transcriptional regulator, TetR family compare
PP_3102 -1.4 -2.4 conserved protein of unknown function compare
PP_2302 -1.4 -3.1 DNA-binding, ATP-dependent protease compare
PP_0406 -1.4 -1.8 Nucleotidyltransferase family protein compare
PP_3738 -1.4 -2.4 putative Transcriptional regulator VanR compare
PP_5203 -1.3 -3.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_5310 -1.3 -3.7 junction-specific ATP-dependent DNA helicase compare
PP_4695 -1.3 -4.8 Sensory box histidine kinase compare
PP_1215 -1.3 -0.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_2337 -1.3 -1.9 aconitate isomerase compare
PP_2429 -1.3 -1.7 putative Membrane protein compare
PP_3715 -1.3 -2.9 Muconate cycloisomerase 1 compare
PP_0380 -1.3 -2.7 Coenzyme PQQ synthesis protein A compare
PP_0362 -1.3 -4.5 Biotin synthase compare
PP_4560 -1.3 -2.5 putative Ribonuclease BN compare
PP_0513 -1.3 -1.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_4131 -1.3 -3.7 NADH-quinone oxidoreductase subunit N compare
PP_0957 -1.2 -1.1 D-arabinose 5-phosphate isomerase compare
PP_5104 -1.2 -3.2 thiazole synthase compare
PP_5038 -1.2 -1.8 conserved lipoprotein of unknown function compare
PP_5639 -1.2 -5.4 conserved exported protein of unknown function compare
PP_3449 -1.2 -1.7 conserved exported protein of unknown function compare
PP_3037 -1.2 -1.2 C4-type zinc finger protein, DksA/TraR family compare
PP_2668 -1.2 -1.4 ABC efflux transporter, ATP-binding protein compare
PP_1142 -1.2 -0.8 conserved protein of unknown function compare
PP_0363 -1.2 -5.2 8-amino-7-oxononanoate synthase compare
PP_3808 -1.2 -1.0 Antibiotic synthesis protein MbtH compare
PP_2800 -1.2 -2.7 putative Diaminobutyrate-2-oxoglutarate transaminase compare
PP_4793 -1.2 -1.7 conserved protein of unknown function compare
PP_4880 -1.2 -4.5 exoribonuclease R compare
PP_0164 -1.2 -2.6 conserved protein of unknown function compare
PP_1493 -1.2 -1.4 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_2547 -1.1 -3.1 Transcriptional regulator, LysR family compare
PP_4892 -1.1 -3.1 integral membrane ATP-dependent zinc metallopeptidase / HflK-HflC complex compare
PP_3110 -1.1 -1.2 protein of unknown function compare
PP_t10 -1.1 -0.9 tRNA-Pro compare
PP_4981 -1.1 -1.9 polyisoprene-binding protein, acidic stress response factor compare
PP_1675 -1.1 -4.2 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_2509 -1.1 -2.7 conserved protein of unknown function compare
PP_0834 -1.1 -1.1 Sec translocation complex subunit YajC compare
PP_5143 -1.1 -1.3 conserved membrane protein of unknown function compare
PP_1026 -1.1 -1.9 Peptidase, M23/M37 family compare
PP_2171 -1.1 -3.0 Transporter, LysE family compare
PP_0827 -1.1 -1.4 putative phosphonate transport system permease protein PtxC compare
PP_4481 -1.1 -3.1 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5659 -1.1 -1.3 protein of unknown function compare
PP_4699 -1.1 -2.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2375 -1.1 -5.1 cobalamin-dependent methionine synthase compare
PP_2883 -1.1 -1.4 conserved protein of unknown function compare
PP_3075 -1.1 -1.6 putative transcriptional regulator compare
PP_0365 -1.1 -3.9 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_0832 -1.1 -2.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0393 -1.1 -1.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4249 -1.1 -2.5 conserved protein of unknown function compare
PP_1906 -1.1 -1.6 ribosomal large subunit pseudouridine synthase C compare
PP_3380 -1.1 -2.3 2-ketogluconate utilization repressor compare
PP_3506 -1.1 -2.0 Magnesium chelatase, subunit ChII compare
PP_2791 -1.1 -1.9 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_2675 -1.1 -1.3 Cytochrome c-type protein compare
PP_4340 -1.0 -2.2 response regulator for chemotactic signal transduction compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas putida KT2440

For nitrogen source D-Glucose across organisms