Experiment set19IT089 for Pseudomonas putida KT2440

Compare to:

Ammonium chloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PP_4073 -7.2 -3.0 conserved exported protein of unknown function compare
PP_0293 -6.6 -2.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1986 -6.0 -3.2 3-isopropylmalate dehydratase small subunit compare
PP_0082 -5.9 -4.1 tryptophan synthase alpha chain compare
PP_2370 -5.8 -3.4 conserved protein of unknown function compare
PP_0083 -5.8 -4.0 tryptophan synthase beta chain compare
PP_0566 -5.2 -1.3 translation-related factor compare
PP_3098 -5.1 -1.2 conserved protein of unknown function compare
PP_4254 -5.1 -1.7 conserved protein of unknown function compare
PP_4199 -5.1 -1.2 putative Lipoprotein compare
PP_2442 -5.0 -1.7 conserved protein of unknown function, DUF480 family compare
PP_1733 -4.8 -4.6 membrane ATPase of the MinC-MinD-MinE system compare
PP_0593 -4.7 -1.1 putative ribosome-binding factor compare
PP_0422 -4.7 -5.2 Indole-3-glycerol phosphate synthase compare
PP_1079 -4.4 -7.8 Ornithine carbamoyltransferase compare
PP_3312 -4.3 -1.5 putative Heat shock protein compare
PP_0001 -4.3 -2.1 probable chromosome-partitioning protein compare
PP_0289 -4.2 -6.9 Imidazoleglycerol-phosphate dehydratase compare
PP_0888 -4.1 -2.4 Photosynthetic apparatus regulatory protein RegA compare
PP_0967 -4.1 -6.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_5347 -4.1 -9.8 pyruvate carboxylase subunit A compare
PP_0966 -4.0 -7.8 Histidinol dehydrogenase compare
PP_4680 -4.0 -9.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4678 -3.8 -9.3 Ketol-acid reductoisomerase compare
PP_2371 -3.6 -5.3 Sulphite reductase hemoprotein, beta subunit compare
PP_5346 -3.5 -6.3 pyruvate carboxylase subunit B compare
PP_2497 -3.5 -2.2 conserved protein of unknown function compare
PP_3511 -3.5 -5.8 Branched-chain-amino-acid aminotransferase compare
PP_1912 -3.3 -5.2 Phosphate acyltransferase compare
PP_5348 -3.3 -5.5 Transcriptional regulator, LysR family compare
PP_1672 -3.2 -3.7 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase compare
PP_1328 -3.2 -2.5 Protein MraZ compare
PP_4136 -3.1 -1.0 Transcriptional regulator, LuxR family compare
PP_0787 -3.1 -2.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4874 -3.1 -1.5 50S ribosomal protein L9 compare
PP_4696 -3.1 -4.9 Nitrogen regulation protein NR(I) compare
PP_1988 -3.1 -4.2 3-isopropylmalate dehydrogenase compare
PP_4679 -3.0 -4.5 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0366 -3.0 -3.7 dethiobiotin synthetase compare
PP_5217 -2.9 -7.5 Polyphosphate kinase compare
PP_5471 -2.9 -1.9 putative response regulator receiver protein compare
PP_0291 -2.9 -2.2 conserved protein of unknown function compare
PP_1679 -2.9 -2.0 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PP_4804 -2.7 -3.8 RlpA-like lipoprotein compare
PP_0362 -2.7 -6.5 Biotin synthase compare
PP_1025 -2.6 -7.8 2-isopropylmalate synthase compare
PP_3999 -2.6 -7.5 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2846 -2.6 -1.9 urease accessory protein compare
PP_4977 -2.5 -5.7 5,10-methylenetetrahydrofolate reductase compare
PP_5128 -2.5 -4.7 Dihydroxy-acid dehydratase compare
PP_4700 -2.5 -1.7 pantothenate synthetase compare
PP_5095 -2.5 -1.2 pyrroline-5-carboxylate reductase compare
PP_4561 -2.5 -1.0 stress response protein compare
PP_2328 -2.5 -4.2 Phosphoadenosine phosphosulfate reductase compare
PP_2168 -2.5 -5.6 Transaldolase compare
PP_5571 -2.5 -1.4 conserved protein of unknown function compare
PP_1654 -2.4 -3.4 cysteine synthase B compare
PP_2203 -2.4 -2.0 conserved protein of unknown function compare
PP_3117 -2.3 -1.9 putative protein involved in error-prone processing of DNA lesions compare
PP_5289 -2.3 -2.2 Acetylglutamate kinase compare
PP_1995 -2.3 -4.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4984 -2.3 -5.6 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_5155 -2.3 -3.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2327 -2.2 -4.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5008 -2.2 -1.4 Poly granule-associated protein compare
PP_4826 -2.2 -3.8 Precorrin-3B C17-methyltransferase compare
PP_0363 -2.2 -5.9 8-amino-7-oxononanoate synthase compare
PP_1353 -2.2 -3.1 conserved membrane protein of unknown function compare
PP_1002 -2.1 -5.1 arginine/ornithine antiporter compare
PP_3332 -2.1 -2.7 putative cytochrome c-type protein compare
PP_1985 -2.1 -2.9 3-isopropylmalate dehydratase large subunit compare
PP_0421 -2.1 -3.7 Anthranilate phosphoribosyltransferase compare
PP_4785 -2.1 -4.7 conserved exported protein of unknown function compare
PP_0292 -1.9 -1.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0065 -1.9 -2.8 NAD-binding component of TrK potassium transporter compare
PP_1303 -1.9 -3.8 Sulfate adenylyltransferase subunit 2 compare
PP_5097 -1.8 -6.0 homoserine O-acetyltransferase compare
PP_3392 -1.8 -1.3 conserved protein of unknown function compare
PP_2615 -1.8 -2.2 hemolysin-coregulated protein compare
PP_5007 -1.8 -1.8 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0965 -1.8 -4.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_2137 -1.8 -1.8 beta-ketoadipyl CoA thiolase, beta component compare
PP_4997 -1.7 -1.5 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_4832 -1.7 -2.1 Precorrin-6x reductase compare
PP_0365 -1.7 -4.0 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4890 -1.7 -2.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_1322 -1.7 -1.6 putative Lipoprotein compare
PP_3035 -1.7 -2.0 conserved protein of unknown function compare
PP_0417 -1.7 -6.8 Anthranilate synthase component 1 compare
PP_1088 -1.7 -4.6 Argininosuccinate synthase compare
PP_4271 -1.7 -0.9 conserved protein of unknown function compare
PP_0719 -1.7 -1.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1231 -1.7 -2.7 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_1362 -1.6 -2.4 pyruvate kinase II compare
PP_3411 -1.6 -1.3 conserved protein of unknown function compare
PP_0406 -1.6 -1.8 Nucleotidyltransferase family protein compare
PP_1096 -1.6 -1.7 putative electron transport complex protein compare
PP_1000 -1.6 -3.2 ornithine carbamoyltransferase, catabolic compare
PP_0547 -1.6 -2.9 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0126 -1.5 -1.5 Cytochrome c4 compare
PP_5609 -1.5 -2.1 conserved protein of unknown function compare
PP_2375 -1.5 -6.1 cobalamin-dependent methionine synthase compare
PP_4808 -1.5 -0.8 23S rRNA m3psi1915 methyltransferase compare
PP_3205 -1.5 -2.1 Fumarylacetoacetate hydrolase family protein compare
PP_0122 -1.5 -1.0 conserved exported protein of unknown function compare
PP_5475 -1.5 -0.9 conserved protein of unknown function compare
PP_5711 -1.5 -3.0 protein of unknown function compare
PP_0025 -1.5 -1.0 hypothetical protein compare
PP_2088 -1.5 -1.6 RNA polymerase sigma factor SigX compare
PP_4213 -1.5 -2.0 putative dipeptidase compare
PP_0364 -1.5 -3.6 pimeloyl-[acp] methyl ester esterase compare
PP_0653 -1.5 -1.1 conserved protein of unknown function compare
PP_3417 -1.4 -2.4 D-gluconate transporter compare
PP_4827 -1.4 -4.9 Precorrin-2 C(20)-methyltransferase compare
PP_5232 -1.4 -1.1 conserved protein of unknown function compare
PP_5448 -1.4 -2.2 conserved protein of unknown function compare
PP_2031 -1.4 -1.5 conserved protein of unknown function compare
PP_4480 -1.4 -3.5 arginine N-succinyltransferase, subunit alpha compare
PP_1681 -1.4 -3.9 cobalamin 5'-phosphate synthase / Cobalamin synthase compare
PP_5203 -1.4 -3.3 5-formyltetrahydrofolate cyclo-ligase compare
PP_4824 -1.4 -4.4 Sensor histidine kinase/response regulator compare
PP_0627 -1.4 -1.4 conserved protein of unknown function compare
PP_2878 -1.4 -1.9 conserved protein of unknown function compare
PP_2429 -1.4 -1.3 putative Membrane protein compare
PP_1822 -1.3 -2.9 conserved protein of unknown function compare
PP_4262 -1.3 -1.4 Cytochrome oxidase maturation protein, cbb3-type compare
PP_2336 -1.3 -2.4 aconitate hydratase 1 compare
PP_5647 -1.3 -2.7 conserved protein of unknown function compare
PP_1994 -1.3 -1.6 tRNA pseudouridine (38-40)synthase compare
PP_0290 -1.3 -2.2 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4706 -1.3 -2.6 conserved protein of unknown function compare
PP_4961 -1.3 -1.1 putative Lipoprotein compare
PP_1632 -1.3 -1.4 conserved protein of unknown function compare
PP_2302 -1.3 -2.6 DNA-binding, ATP-dependent protease compare
PP_4066 -1.3 -1.9 methylglutaconyl-CoA hydratase compare
PP_1656 -1.2 -4.1 ATP:GTP 3'-pyrophosphotransferase compare
PP_5303 -1.2 -2.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2695 -1.2 -1.9 Transcriptional regulator, LysR family compare
PP_3408 -1.2 -1.4 cobalt transporter subunit A compare
PP_3715 -1.2 -1.4 Muconate cycloisomerase 1 compare
PP_1138 -1.2 -2.1 branched chain amino acid transporter - ATP binding subunit compare
PP_4964 -1.2 -1.8 D-erythrose 4-phosphate dehydrogenase compare
PP_4792 -1.2 -1.4 conserved exported protein of unknown function compare
PP_5317 -1.2 -1.8 Probable chorismate pyruvate-lyase compare
PP_4308 -1.2 -1.8 Transcriptional regulator, AsnC family compare
PP_4895 -1.2 -2.1 tRNA dimethylallyltransferase compare
PP_0828 -1.2 -2.1 conserved membrane protein of unknown function compare
PP_0893 -1.2 -2.6 ThiJ/PfpI family protein compare
PP_2001 -1.2 -3.3 O-succinylhomoserine sulfhydrylase compare
PP_4830 -1.2 -2.4 precorrin-6Y C(5,15)-methyltransferase compare
PP_4909 -1.2 -2.7 phosphoserine phosphatase compare
PP_3607 -1.2 -2.5 conserved membrane protein of unknown function compare
PP_5014 -1.2 -1.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_1692 -1.2 -1.5 conserved protein of unknown function compare
PP_4699 -1.2 -1.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1676 -1.1 -1.9 subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_4981 -1.1 -1.2 polyisoprene-binding protein, acidic stress response factor compare
PP_2756 -1.1 -1.6 conserved protein of unknown function compare
PP_1734 -1.1 -1.7 Probable septum site-determining protein MinC compare
PP_0738 -1.1 -2.0 conserved protein of unknown function compare
PP_5267 -1.1 -1.1 putative cytochrome c5 compare
PP_1304 -1.1 -3.9 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3509 -1.1 -1.7 Glyoxalase family protein compare
PP_5639 -1.1 -3.9 conserved exported protein of unknown function compare
PP_4387 -1.1 -1.2 conserved exported protein of unknown function compare
PP_0232 -1.1 -0.9 ATP-binding taurine transporter subunit compare
PP_5508 -1.1 -0.9 conserved protein of unknown function compare
PP_1089 -1.1 -2.1 conserved protein of unknown function compare
PP_5274 -1.1 -1.1 conserved protein of unknown function compare
PP_1788 -1.1 -1.2 conserved protein of unknown function compare
PP_4693 -1.1 -2.6 RNA polymerase-binding transcription factor DksA compare
PP_1454 -1.1 -2.0 conserved protein of unknown function compare
PP_0616 -1.1 -2.2 Branched-chain amino acid ABC transporter, ATP binding protein compare
PP_3891 -1.1 -0.7 conserved protein of unknown function compare
PP_2217 -1.1 -1.2 enoyl-CoA hydratase compare
PP_1675 -1.1 -2.9 Subunit of adenosylcobinamide-phosphate synthase beta component compare
PP_0398 -1.1 -1.7 Thiosulfate sulfurtransferase GlpE compare
PP_4782 -1.1 -2.2 Phosphomethylpyrimidine kinase compare
PP_1655 -1.1 -2.0 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_1575 -1.1 -0.8 conserved protein of unknown function compare
PP_5659 -1.1 -2.1 protein of unknown function compare
PP_3935 -1.0 -1.9 conserved protein of unknown function compare
PP_5227 -1.0 -3.4 diaminopimelate decarboxylase compare
PP_3480 -1.0 -1.3 conserved protein of unknown function compare
PP_0512 -1.0 -1.3 hypothetical protein compare
PP_4560 -1.0 -2.4 putative Ribonuclease BN compare
PP_3539 -1.0 -1.8 putative Transcriptional regulator compare
PP_2129 -1.0 -3.5 conserved protein of unknown function compare
PP_3792 -1.0 -1.0 conserved protein of unknown function compare
PP_0184 -1.0 -1.7 Argininosuccinate lyase compare
PP_4593 -1.0 -1.1 conserved protein of unknown function compare
PP_2136 -1.0 -2.1 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_5230 -1.0 -2.0 Tyrosine recombinase XerC compare
PP_2820 -1.0 -1.5 HTH-type transcriptional regulator nfxB compare
PP_2724 -1.0 -2.2 conserved protein of unknown function compare
PP_1739 -1.0 -1.4 conserved membrane protein of unknown function compare
PP_1748 -1.0 -2.2 conserved protein of unknown function compare
PP_1346 -1.0 -2.4 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_1508 -1.0 -2.0 conserved protein of unknown function compare
PP_2750 -1.0 -1.8 putative Branched-chain amino acid ABC transporter, permease protein compare


Specific Phenotypes

For 1 genes in this experiment

For nitrogen source D-Glucose in Pseudomonas putida KT2440

For nitrogen source D-Glucose across organisms